jgi.p|Nanoce1779_2|611080, mRNA_10337 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|611080
Unique Name	mRNA_10337
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1286
Alignment location	scaffold_54:20977..22262 +

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Properties


Property Name	Value
TranscriptId	611166
Track	FilteredModels2
ProteinId	611080

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:20977..22262 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611080	gene_10337	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|611080	mRNA_10337-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10337	CDS_10337	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:20977..22262+
coding sequence from alignment at scaffold_54:20977..22262+

mRNA sequence

>mRNA_10337 ID=mRNA_10337|Name=jgi.p|Nanoce1779_2|611080|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp
CCAGCCTTCGTTCAGCAATGGCGACAGCCTCGCTTGAATCAGCTCTCGAA
CCACGTCGTCTGTGAGCAGGGCCGCCTTCTTCCCCTCCTCCTTCCCACCG
TCCTTCCCACCCTCCTTCCCACCCTCCTTGGCCGCCTTGATGGCCTGGAG
CGCAGCGAGGGTGGGAGGGAGGGCGTGTCGGACAGAGGGGTAGACCTGAG
CCATCCCCTCCAGCAGTGCCGTCAATGTCGTAAGAGCCTCATCAAACTTC
ATCCTCCCCTCCTTCTTCATCCACTCCATGCTCGACACCCATTCCTGGGC
CAAATTCGCAGCGTTGCTCGTCACATCGAGGTTCAACAAAGGTGAAAACG
CCTTGTAATTGGCTAGGATATGAAGTTTGGTGTACGTGTCTGTGGCCTCA
GGAGAGAAATTGATGGAGGACACGAGGGAGGCAGGGCCCAAGGGGGGAGC
ATAGAGCTTGCAGGCCTCCCAGGCGCCGTTGACGGGGTCTTTGAGTAACG
AGGTGTGGGTGTTGCTCCATGTCAGTAAAGGTGTGCTACTGCCAACGCTG
CTGCTGTTCTTACGATTATTACTGCTGCTGCTGCTGGCTGCTGTCGCGCC
ATTCGTCTTTCCTGTCAATACTTTCTTGCTGCTGCTGCTGCTGCTGTTCT
TGCTGCTGCCATAATTCCCAGCAGTATTAGCACCAACTGCCCCCGCCATA
CACCTATTCGTCGCGTGTTGCACCAACACGGACTTGAAGTCTTCGTCCTC
GCTTCCATGCACCTGCAAGAGGACCTGGCCATAGTAATCTTTTGACAGGT
CTGTGATGAATTTGTTGAGGACCGGGGATTTACCCACTGCTTGCAGCAAG
AGGCCCGTGTGCATCCAGTCGGCGACGGGGTCCGAGAAGGACTTGCGGCT
GGTAGTGTGAGAGGAAGTGGCCTTATTCTTATTCTTATTCTTGGTTGCGG
CGGCCAACGCTGTTGCTTCTTTCTTCGCAGGTGCTGCGGGCGCAGGAGGC
GCCCCGGCGGTGGCGAGAGGAGTAGGAGGCGGATGTGCCTTCGTCTCCCT
CACTCCACCGCCGCCATTGCTGTTTCTGCCGTTTGTTTTTTTGGCAGAAG
CAGGAGCAGCCGGAGGTGGGGGGGGAGGCAACGGGACTTTGCCGGGTGCT
GCTTTGTGCTTGCTGACTTGGTCTGCGCCGCCTGGTGCGCCTCCTTTCTT
GGGTGGCATGATGATGCTGGCCGTTGGGCACGCTTCGGGTGTGGTGGGAG
CGGCGCAGCTGACTGCGTTCGAAGCGTACAGTCCTG

protein sequence of jgi.p|Nanoce1779_2|611080

>mRNA_10337-protein ID=mRNA_10337-protein|Name=jgi.p|Nanoce1779_2|611080|organism=Nannochloropsis oceanica|type=polypeptide|length=84bp
MCLRLPHSTAAIAVSAVCFFGRSRSSRRWGGRQRDFAGCCFVLADLVCAA
WCASFLGWHDDAGRWARFGCGGSGAADCVRSVQS

mRNA from alignment at scaffold_54:20977..22262+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10337 ID=mRNA_10337|Name=jgi.p|Nanoce1779_2|611080|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp|location=Sequence derived from alignment at scaffold_54:20977..22262+ (Nannochloropsis oceanica)
CCAGCCTTCGTTCAGCAATGGCGACAGCCTCGCTTGAATCAGCTCTCGAA
CCACGTCGTCTGTGAGCAGGGCCGCCTTCTTCCCCTCCTCCTTCCCACCG
TCCTTCCCACCCTCCTTCCCACCCTCCTTGGCCGCCTTGATGGCCTGGAG
CGCAGCGAGGGTGGGAGGGAGGGCGTGTCGGACAGAGGGGTAGACCTGAG
CCATCCCCTCCAGCAGTGCCGTCAATGTCGTAAGAGCCTCATCAAACTTC
ATCCTCCCCTCCTTCTTCATCCACTCCATGCTCGACACCCATTCCTGGGC
CAAATTCGCAGCGTTGCTCGTCACATCGAGGTTCAACAAAGGTGAAAACG
CCTTGTAATTGGCTAGGATATGAAGTTTGGTGTACGTGTCTGTGGCCTCA
GGAGAGAAATTGATGGAGGACACGAGGGAGGCAGGGCCCAAGGGGGGAGC
ATAGAGCTTGCAGGCCTCCCAGGCGCCGTTGACGGGGTCTTTGAGTAACG
AGGTGTGGGTGTTGCTCCATGTCAGTAAAGGTGTGCTACTGCCAACGCTG
CTGCTGTTCTTACGATTATTACTGCTGCTGCTGCTGGCTGCTGTCGCGCC
ATTCGTCTTTCCTGTCAATACTTTCTTGCTGCTGCTGCTGCTGCTGTTCT
TGCTGCTGCCATAATTCCCAGCAGTATTAGCACCAACTGCCCCCGCCATA
CACCTATTCGTCGCGTGTTGCACCAACACGGACTTGAAGTCTTCGTCCTC
GCTTCCATGCACCTGCAAGAGGACCTGGCCATAGTAATCTTTTGACAGGT
CTGTGATGAATTTGTTGAGGACCGGGGATTTACCCACTGCTTGCAGCAAG
AGGCCCGTGTGCATCCAGTCGGCGACGGGGTCCGAGAAGGACTTGCGGCT
GGTAGTGTGAGAGGAAGTGGCCTTATTCTTATTCTTATTCTTGGTTGCGG
CGGCCAACGCTGTTGCTTCTTTCTTCGCAGGTGCTGCGGGCGCAGGAGGC
GCCCCGGCGGTGGCGAGAGGAGTAGGAGGCGGATGTGCCTTCGTCTCCCT
CACTCCACCGCCGCCATTGCTGTTTCTGCCGTTTGTTTTTTTGGCAGAAG
CAGGAGCAGCCGGAGGTGGGGGGGGAGGCAACGGGACTTTGCCGGGTGCT
GCTTTGTGCTTGCTGACTTGGTCTGCGCCGCCTGGTGCGCCTCCTTTCTT
GGGTGGCATGATGATGCTGGCCGTTGGGCACGCTTCGGGTGTGGTGGGAG
CGGCGCAGCTGACTGCGTTCGAAGCGTACAGTCCTG

Coding sequence (CDS) from alignment at scaffold_54:20977..22262+

>mRNA_10337 ID=mRNA_10337|Name=jgi.p|Nanoce1779_2|611080|organism=Nannochloropsis oceanica|type=CDS|length=254bp|location=Sequence derived from alignment at scaffold_54:20977..22262+ (Nannochloropsis oceanica)
ATGTGCCTTCGTCTCCCTCACTCCACCGCCGCCATTGCTGTTTCTGCCGT
TTGTTTTTTTGGCAGAAGCAGGAGCAGCCGGAGGTGGGGGGGGAGGCAAC
GGGACTTTGCCGGGTGCTGCTTTGTGCTTGCTGACTTGGTCTGCGCCGCC
TGGTGCGCCTCCTTTCTTGGGTGGCATGATGATGCTGGCCGTTGGGCACG
CTTCGGGTGTGGTGGGAGCGGCGCAGCTGACTGCGTTCGAAGCGTACAGT
CCTG

Synonyms

Publications