jgi.p|Nanoce1779_2|674752, mRNA_10335 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674752
Unique Name	mRNA_10335
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1688
Alignment location	scaffold_54:15993..18132 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674838
Track	FilteredModels2
ProteinId	674752

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:15993..18132 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674752	gene_10335	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674752	mRNA_10335-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10335	CDS_10335	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:15993..18132+
coding sequence from alignment at scaffold_54:15993..18132+

mRNA sequence

>mRNA_10335 ID=mRNA_10335|Name=jgi.p|Nanoce1779_2|674752|organism=Nannochloropsis oceanica|type=mRNA|length=1688bp
ATGGTCAAGGTGCGTACCACTAAAACCACCACCAGTCGCTCCGCCGCGAG
CACGATCAGCGGCACGCGGACCCGTCCTCGTCGCCGCGACCTGAAGGTCG
ACTCACCCGTGCCCGAGGTGCCCAACGATGACGAACAAGACGGGGATGGA
GGAAGTGGAGGAGGGAAGAAGTGGGTGCGTATCTACCCGTTGGGACTCGG
GAAATATGGCGACGAGACGGCAGTCTTCTTGGGGCGGAGGAAAGAGGTGC
GGAATCTGGAAGGGGGAAGATTAGAAGCCTTGCCAGTGCCTGTCTTTGCG
TCCGGCGACCTGGAGATGCTGGTGGCGGCCTTCCGAGGGCGGGAGGGAGA
AAAAGATGGAGACCAAAATAGCAATAAATTTAAGCAGTCAGTACTATGGG
CGGGGCGGCACCTGGCGACAAAGGACGACGGGTTATTGGACAATGCTCCT
TGGGAATGGGTAGACAAAGGCAGGGAAGGAGGAGGAGCAGAAGGAGGAAA
AGGAGGAGGAGGAGAAGGAGCAGCAGCAGCAGCAGCAGCAGTGGCGAGGG
CAGCCACAGCCGCTGCAGAGGCGAAGAAGGAAGCGTACAACACTTTTGTA
TTCGGGAAAAATTTGGACCCTTCCAAGTTCTCCTCTCCCTACGCATTGAT
GCTGCATGTTGTGCGGGAAATGGTCGGAGCGGTGGTGCTGGAGCTGCTAA
TTGATGAGGAAGATAGTCCGCGAGGACCGGGTATTACGTTTGGGCCGGTC
GTTTTGCTGCAAGAAGATCCACCTTCTTCTTCTTATCCTGAAAGTGCCCC
TCGGAGAAAGCTCGTAGACTGCCTTTTGGATGAGGTTATCGGCCTGTCCC
TCGCCCAAGATCGTCCCATCAAGATGCCTCTGGACCTGTATGACGCCACT
GTCCGTATCGCACGCGTGGTAGGAAGGGGTAAAGACGGCATCCTGCAGCT
GGAAGCTGCTGAAGAGGAGGGAGGGAGGGAGGGAAGGAGGAGGGACGTGG
TAGCGGTGATGGAGAACGTGAAACCGGCGTGGGAGATTGCGTCGGCTGAA
GTATTCCGAAATATGGACACCCAAGAGAAACGGCTCTGCTTGATCAAAAG
TGGGGCGGAGGGAATACCAAAGAGAAGGGAGGGGCCGCAGGAGCTCGATC
TTGCCCTTCTTCCGTTCTTGGATGAAACGGTGCGGAGAGAGGCGAGAATC
ATCCTGGCGATGGAGAGAGGGGACTGGAAAGCAGTCGCAGTTCTGGAGGA
GGGAAAGAGTGCGAGGGGTCGAGTGAAGGATCGGTTGAGGAAAGCCGTGC
AGGAGGGGGAAGACGCAGGTGTGCTTGCCATGTTGGAGGAGGAGTTCATA
CGGCTGACAGCTGCCAAGCTCGATCCGACGCAAGACGAAGGGAGTTATCA
GAGGGATCTGGATCAGGATGATTGGTATTTGAAAAATAGACGGACCTAGT
GTAGGAGGATGTCGTAATATAGAAGAAGTCGTGGTAGTAGTATCATCCCT
TTGGACGTAATGATAATGGTAAAGATGGGGAAGGTCGGCCATTGACTTCC
TCCTCTCTTCCAGGGGTGGAGGAGGATAAGGGGGGATAGAGGTAGGGTCT
GTGTTATTATTGGGATTTGTACAGTCGAAAGGAGAAGACACAATGCAAAA
TGGTATGGGAGCCCCGAAAAAAATGCATAGTTTTTTTC

protein sequence of jgi.p|Nanoce1779_2|674752

>mRNA_10335-protein ID=mRNA_10335-protein|Name=jgi.p|Nanoce1779_2|674752|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MVKVRTTKTTTSRSAASTISGTRTRPRRRDLKVDSPVPEVPNDDEQDGDG
GSGGGKKWVRIYPLGLGKYGDETAVFLGRRKEVRNLEGGRLEALPVPVFA
SGDLEMLVAAFRGREGEKDGDQNSNKFKQSVLWAGRHLATKDDGLLDNAP
WEWVDKGREGGGAEGGKGGGGEGAAAAAAAVARAATAAAEAKKEAYNTFV
FGKNLDPSKFSSPYALMLHVVREMVGAVVLELLIDEEDSPRGPGITFGPV
VLLQEDPPSSSYPESAPRRKLVDCLLDEVIGLSLAQDRPIKMPLDLYDAT
VRIARVVGRGKDGILQLEAAEEEGGREGRRRDVVAVMENVKPAWEIASAE
VFRNMDTQEKRLCLIKSGAEGIPKRREGPQELDLALLPFLDETVRREARI
ILAMERGDWKAVAVLEEGKSARGRVKDRLRKAVQEGEDAGVLAMLEEEFI
RLTAAKLDPTQDEGSYQRDLDQDDWYLKNRRT*

mRNA from alignment at scaffold_54:15993..18132+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10335 ID=mRNA_10335|Name=jgi.p|Nanoce1779_2|674752|organism=Nannochloropsis oceanica|type=mRNA|length=2140bp|location=Sequence derived from alignment at scaffold_54:15993..18132+ (Nannochloropsis oceanica)
ATGGTCAAGGTGTACGTCTCCCTCTCAGTCTGGCAACAGAGCTTCAACGA
CTCCTCGAGCCGTCGCTCAAGAACACCTTGGAAAGAAAAGTCAGACGAAC
CATCCCCACAAACACACAGACTGCAGGACTAACTCATCGATAAACATGCC
TGCCGCCTTGTCTCTATCGCGATGCCGACCGCATGGTCAAATCATCGAGG
TGCCAAGCCGTGTTCTGCTCCTGCATTTTTTCCTTCTCCTCCTCCTCCAC
CTGGTCAGCCTCTGCTACTCTCGACCATGTGTGCCATCGTCTTGTCCATG
CTTTTTGCCCGTTGTCGTTACTTGCAGGCGTACCACTAAAACCACCACCA
GTCGCTCCGCCGCGAGCACGATCAGCGGCACGCGGACCCGTCCTCGTCGC
CGCGACCTGAAGGTCGACTCACCCGTGCCCGAGGTGCCCAACGATGACGA
ACAAGACGGGGATGGAGGAAGTGGAGGAGGGAAGAAGTGGGTGCGTATCT
ACCCGTTGGGACTCGGGAAATATGGCGACGAGACGGCAGTCTTCTTGGGG
CGGAGGAAAGAGGTGCGGAATCTGGAAGGGGGAAGATTAGAAGCCTTGCC
AGTGCCTGTCTTTGCGTCCGGCGACCTGGAGATGCTGGTGGCGGCCTTCC
GAGGGCGGGAGGGAGAAAAAGATGGAGACCAAAATAGCAATAAATTTAAG
CAGTCAGTACTATGGGCGGGGCGGCACCTGGCGACAAAGGACGACGGGTT
ATTGGACAATGCTCCTTGGGAATGGGTAGACAAAGGCAGGGAAGGAGGAG
GAGCAGAAGGAGGAAAAGGAGGAGGAGGAGAAGGAGCAGCAGCAGCAGCA
GCAGCAGTGGCGAGGGCAGCCACAGCCGCTGCAGAGGCGAAGAAGGAAGC
GTACAACACTTTTGTATTCGGGAAAAATTTGGACCCTTCCAAGTTCTCCT
CTCCCTACGCATTGATGCTGCATGTTGTGCGGGAAATGGTCGGAGCGGTG
GTGCTGGAGCTGCTAATTGATGAGGAAGATAGTCCGCGAGGACCGGGTAT
TACGTTTGGGCCGGTCGTTTTGCTGCAAGAAGATGTAAGTCCAGGGGAAA
GACCAAGCTGTCTTCAGGTGGTATGACTCTCCTCTCAATTCTACATCTTA
CTCTTTCCTGCCTCCCTCCTCTTCTCCCTTCCTCCCCTGCCTTCCCCCTC
CACTTCCTATCTACCAACAGCCACCTTCTTCTTCTTATCCTGAAAGTGCC
CCTCGGAGAAAGCTCGTAGACTGCCTTTTGGATGAGGTTATCGGCCTGTC
CCTCGCCCAAGATCGTCCCATCAAGATGCCTCTGGACCTGTATGACGCCA
CTGTCCGTATCGCACGCGTGGTAGGAAGGGGTAAAGACGGCATCCTGCAG
CTGGAAGCTGCTGAAGAGGAGGGAGGGAGGGAGGGAAGGAGGAGGGACGT
GGTAGCGGTGATGGAGAACGTGAAACCGGCGTGGGAGATTGCGTCGGCTG
AAGTATTCCGAAATATGGACACCCAAGAGAAACGGCTCTGCTTGATCAAA
AGTGGGGCGGAGGGAATACCAAAGAGAAGGGAGGGGCCGCAGGAGCTCGA
TCTTGCCCTTCTTCCGTTCTTGGATGAAACGGTGCGGAGAGAGGCGAGAA
TCATCCTGGCGATGGAGAGAGGGGACTGGAAAGCAGTCGCAGTTCTGGAG
GAGGGAAAGAGTGCGAGGGGTCGAGTGAAGGATCGGTTGAGGAAAGCCGT
GCAGGAGGGGGAAGACGCAGGTGTGCTTGCCATGTTGGAGGAGGAGTTCA
TACGGCTGACAGCTGCCAAGCTCGATCCGACGCAAGACGAAGGGAGTTAT
CAGAGGGATCTGGATCAGGATGATTGGTATTTGAAAAATAGACGGACCTA
GTGTAGGAGGATGTCGTAATATAGAAGAAGTCGTGGTAGTAGTATCATCC
CTTTGGACGTAATGATAATGGTAAAGATGGGGAAGGTCGGCCATTGACTT
CCTCCTCTCTTCCAGGGGTGGAGGAGGATAAGGGGGGATAGAGGTAGGGT
CTGTGTTATTATTGGGATTTGTACAGTCGAAAGGAGAAGACACAATGCAA
AATGGTATGGGAGCCCCGAAAAAAATGCATAGTTTTTTTC

Coding sequence (CDS) from alignment at scaffold_54:15993..18132+

>mRNA_10335 ID=mRNA_10335|Name=jgi.p|Nanoce1779_2|674752|organism=Nannochloropsis oceanica|type=CDS|length=4347bp|location=Sequence derived from alignment at scaffold_54:15993..18132+ (Nannochloropsis oceanica)
ATGGTCAAGGTGCGTACCACTAAAACCACCACCAGTCGCTCCGCCGCGAG
CACGATCAGCGGCACGCGGACCCGTCCTCGTCGCCGCGACCTGAAGGTCG
ACTCACCCGTGCCCGAGGTGCCCAACGATGACGAACAAGACGGGGATGGA
GGAAGTGGAGGAGGGAAGAAGTGGGTGCGTATCTACCCGTTGGGACTCGG
GAAATATGGCGACGAGACGGCAGTCTTCTTGGGGCGGAGGAAAGAGGTGC
GGAATCTGGAAGGGGGAAGATTAGAAGCCTTGCCAGTGCCTGTCTTTGCG
TCCGGCGACCTGGAGATGCTGGTGGCGGCCTTCCGAGGGCGGGAGGGAGA
AAAAGATGGAGACCAAAATAGCAATAAATTTAAGCAGTCAGTACTATGGG
CGGGGCGGCACCTGGCGACAAAGGACGACGGGTTATTGGACAATGCTCCT
TGGGAATGGGTAGACAAAGGCAGGGAAGGAGGAGGAGCAGAAGGAGGAAA
AGGAGGAGGAGGAGAAGGAGCAGCAGCAGCAGCAGCAGCAGTGGCGAGGG
CAGCCACAGCCGCTGCAGAGGCGAAGAAGGAAGCGTACAACACTTTTGTA
TTCGGGAAAAATTTGGACCCTTCCAAGTTCTCCTCTCCCTACGCATTGAT
GCTGCATGTTGTGCGGGAAATGGTCGGAGCGGTGGTGCTGGAGCTGCTAA
TTGATGAGGAAGATAGTCCGCGAGGACCGGGTATTACGTTTGGGCCGGTC
GTTTTGCTGCAAGAAGATCCACCTTCTTCTTCTTATCCTGAAAGTGCCCC
TCGGAGAAAGCTCGTAGACTGCCTTTTGGATGAGGTTATCGGCCTGTCCC
TCGCCCAAGATCGTCCCATCAAGATGCCTCTGGACCTGTATGACGCCACT
GTCCGTATCGCACGCGTGGTAGGAAGGGGTAAAGACGGCATCCTGCAGCT
GGAAGCTGCTGAAGAGGAGGGAGGGAGGGAGGGAAGGAGGAGGGACGTGG
TAGCGGTGATGGAGAACGTGAAACCGGCGTGGGAGATTGCGTCGGCTGAA
GTATTCCGAAATATGGACACCCAAGAGAAACGGCTCTGCTTGATCAAAAG
TGGGGCGGAGGGAATACCAAAGAGAAGGGAGGGGCCGCAGGAGCTCGATC
TTGCCCTTCTTCCGTTCTTGGATGAAACGGTGCGGAGAGAGGCGAGAATC
ATCCTGGCGATGGAGAGAGGGGACTGGAAAGCAGTCGCAGTTCTGGAGGA
GGGAAAGAGTGCGAGGGGTCGAGTGAAGGATCGGTTGAGGAAAGCCGTGC
AGGAGGGGGAAGACGCAGGTGTGCTTGCCATGTTGGAGGAGGAGTTCATA
CGGCTGACAGCTGCCAAGCTCGATCCGACGCAAGACGAAGGGAGTTATCA
GAGGGATCTGGATCAGGATGATTGGTATTTGAAAAATAGACGGACCTAGA
TGGTCAAGGTGCGTACCACTAAAACCACCACCAGTCGCTCCGCCGCGAGC
ACGATCAGCGGCACGCGGACCCGTCCTCGTCGCCGCGACCTGAAGGTCGA
CTCACCCGTGCCCGAGGTGCCCAACGATGACGAACAAGACGGGGATGGAG
GAAGTGGAGGAGGGAAGAAGTGGGTGCGTATCTACCCGTTGGGACTCGGG
AAATATGGCGACGAGACGGCAGTCTTCTTGGGGCGGAGGAAAGAGGTGCG
GAATCTGGAAGGGGGAAGATTAGAAGCCTTGCCAGTGCCTGTCTTTGCGT
CCGGCGACCTGGAGATGCTGGTGGCGGCCTTCCGAGGGCGGGAGGGAGAA
AAAGATGGAGACCAAAATAGCAATAAATTTAAGCAGTCAGTACTATGGGC
GGGGCGGCACCTGGCGACAAAGGACGACGGGTTATTGGACAATGCTCCTT
GGGAATGGGTAGACAAAGGCAGGGAAGGAGGAGGAGCAGAAGGAGGAAAA
GGAGGAGGAGGAGAAGGAGCAGCAGCAGCAGCAGCAGCAGTGGCGAGGGC
AGCCACAGCCGCTGCAGAGGCGAAGAAGGAAGCGTACAACACTTTTGTAT
TCGGGAAAAATTTGGACCCTTCCAAGTTCTCCTCTCCCTACGCATTGATG
CTGCATGTTGTGCGGGAAATGGTCGGAGCGGTGGTGCTGGAGCTGCTAAT
TGATGAGGAAGATAGTCCGCGAGGACCGGGTATTACGTTTGGGCCGGTCG
TTTTGCTGCAAGAAGATCCACCTTCTTCTTCTTATCCTGAAAGTGCCCCT
CGGAGAAAGCTCGTAGACTGCCTTTTGGATGAGGTTATCGGCCTGTCCCT
CGCCCAAGATCGTCCCATCAAGATGCCTCTGGACCTGTATGACGCCACTG
TCCGTATCGCACGCGTGGTAGGAAGGGGTAAAGACGGCATCCTGCAGCTG
GAAGCTGCTGAAGAGGAGGGAGGGAGGGAGGGAAGGAGGAGGGACGTGGT
AGCGGTGATGGAGAACGTGAAACCGGCGTGGGAGATTGCGTCGGCTGAAG
TATTCCGAAATATGGACACCCAAGAGAAACGGCTCTGCTTGATCAAAAGT
GGGGCGGAGGGAATACCAAAGAGAAGGGAGGGGCCGCAGGAGCTCGATCT
TGCCCTTCTTCCGTTCTTGGATGAAACGGTGCGGAGAGAGGCGAGAATCA
TCCTGGCGATGGAGAGAGGGGACTGGAAAGCAGTCGCAGTTCTGGAGGAG
GGAAAGAGTGCGAGGGGTCGAGTGAAGGATCGGTTGAGGAAAGCCGTGCA
GGAGGGGGAAGACGCAGGTGTGCTTGCCATGTTGGAGGAGGAGTTCATAC
GGCTGACAGCTGCCAAGCTCGATCCGACGCAAGACGAAGGGAGTTATCAG
AGGGATCTGGATCAGGATGATTGGTATTTGAAAAATAGACGGACCTAGAT
GGTCAAGGTGCGTACCACTAAAACCACCACCAGTCGCTCCGCCGCGAGCA
CGATCAGCGGCACGCGGACCCGTCCTCGTCGCCGCGACCTGAAGGTCGAC
TCACCCGTGCCCGAGGTGCCCAACGATGACGAACAAGACGGGGATGGAGG
AAGTGGAGGAGGGAAGAAGTGGGTGCGTATCTACCCGTTGGGACTCGGGA
AATATGGCGACGAGACGGCAGTCTTCTTGGGGCGGAGGAAAGAGGTGCGG
AATCTGGAAGGGGGAAGATTAGAAGCCTTGCCAGTGCCTGTCTTTGCGTC
CGGCGACCTGGAGATGCTGGTGGCGGCCTTCCGAGGGCGGGAGGGAGAAA
AAGATGGAGACCAAAATAGCAATAAATTTAAGCAGTCAGTACTATGGGCG
GGGCGGCACCTGGCGACAAAGGACGACGGGTTATTGGACAATGCTCCTTG
GGAATGGGTAGACAAAGGCAGGGAAGGAGGAGGAGCAGAAGGAGGAAAAG
GAGGAGGAGGAGAAGGAGCAGCAGCAGCAGCAGCAGCAGTGGCGAGGGCA
GCCACAGCCGCTGCAGAGGCGAAGAAGGAAGCGTACAACACTTTTGTATT
CGGGAAAAATTTGGACCCTTCCAAGTTCTCCTCTCCCTACGCATTGATGC
TGCATGTTGTGCGGGAAATGGTCGGAGCGGTGGTGCTGGAGCTGCTAATT
GATGAGGAAGATAGTCCGCGAGGACCGGGTATTACGTTTGGGCCGGTCGT
TTTGCTGCAAGAAGATCCACCTTCTTCTTCTTATCCTGAAAGTGCCCCTC
GGAGAAAGCTCGTAGACTGCCTTTTGGATGAGGTTATCGGCCTGTCCCTC
GCCCAAGATCGTCCCATCAAGATGCCTCTGGACCTGTATGACGCCACTGT
CCGTATCGCACGCGTGGTAGGAAGGGGTAAAGACGGCATCCTGCAGCTGG
AAGCTGCTGAAGAGGAGGGAGGGAGGGAGGGAAGGAGGAGGGACGTGGTA
GCGGTGATGGAGAACGTGAAACCGGCGTGGGAGATTGCGTCGGCTGAAGT
ATTCCGAAATATGGACACCCAAGAGAAACGGCTCTGCTTGATCAAAAGTG
GGGCGGAGGGAATACCAAAGAGAAGGGAGGGGCCGCAGGAGCTCGATCTT
GCCCTTCTTCCGTTCTTGGATGAAACGGTGCGGAGAGAGGCGAGAATCAT
CCTGGCGATGGAGAGAGGGGACTGGAAAGCAGTCGCAGTTCTGGAGGAGG
GAAAGAGTGCGAGGGGTCGAGTGAAGGATCGGTTGAGGAAAGCCGTGCAG
GAGGGGGAAGACGCAGGTGTGCTTGCCATGTTGGAGGAGGAGTTCATACG
GCTGACAGCTGCCAAGCTCGATCCGACGCAAGACGAAGGGAGTTATCAGA
GGGATCTGGATCAGGATGATTGGTATTTGAAAAATAGACGGACCTAG

Synonyms

Publications