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Properties
| Property Name | Value |
|---|
| TranscriptId | 560977 |
| Track | FilteredModels2 |
| ProteinId | 560891 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_54 | supercontig | scaffold_54:2159..3941 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10330 ID=mRNA_10330|Name=jgi.p|Nanoce1779_2|560891|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
GGCGCGGTGTTGCTGGTGCCTTCGATGATGAGGATGCTACTTGCCTTGCG
CTTAAGATTCCGCCAGATACGCAGCTGACCTGTGGATATGATCGTTGGGT
AAAAAGGAGGTCGGTGAGCCAGCTGGGACGACCTAGGTGCTGCTGATGTG
TGTCCCTGCCGTCGGTCACTGTCAGACCTCAAAGGCAATCTTCGCTTGTT
CTCATTTCCCGATTACGAAGAATTAGAAATTGGGCGAGCGTTTTGACCTT
TGTCTCATCCGCCCACACCACATCCCACGACAGGTAGCCACGGGCTCATG
TCGGCGCAGGACGAGGAGCGACGTAAGGCCCTCAAGCCTGCCGTAAACAT
GGCCTCCGCAGTAGCAATTGCCAAGAAAGTTTGGGGTCTACGCATTGACG
ACGATGATGATGATCCACCCAAGCTGCTCGAATCCTATGATGATTGTAAT
TTCTACATTTCCGGCACCCTTCCCCCCTCCGCACTCGACCCCTCTCCGAC
AAAACAAAAGTACCTGCTCAAGGTTCAAAACGGCGTCGAATCCGCCACGC
CCCAAGTTCTTGCCTTTCAACATGCCATGATGTCTCGCCTCACCTCGGCA
GGCCTCCAATGCCAACGGCCAGTCCTCCTTCCTCCCTCCCTCCCTCCATC
CTCCGACAACGTTGAGCCCCACTTCATCCATTATCAAACCCTCCCTGTCC
TAGCAGGGCCTCCCACTCGTCTCGCCATCCGTCTGTTGCAATGGGTGGAA
GGCACCTCCTTAGTCAACATATCTCCGCCCGCTTTTTCTTCATCATCAGC
ACCAAATCTCCCTCCCTCCCCTCCTCCCCTCGCCCTCGCTCTCCTCTCGG
CTGGGAGGTACTTAGGGAAAATAGACCAGGCATTACTGAACTTCAACCAC
CCTGGAGCCCACCGTCAGCATATGTGGGATGTGCGGAGCCTGAGTCAGTT
AAGGGCATGGGTCCCATACGTCCCGGAGGAAGGGGAAAAGCGACGGCTGG
TGCTGTCGGTCATCGAGGCATTCGAGAAGGAGGTGGTACCCACAGCAGGC
TTCCGTCAAGGCGTGGTGATGGGGGATTGGAACGACGCCAACATCATCGT
GGACCCCCTTCGTCCCTCCCTCGTCCTGGGCGCCATCGACTTCGGCGATT
CCCTCTGGAGCTGGAGGATTAACGATGTGGCCATTGCCATGGCCTACGCT
GCCGTCTCTTCCTTTGGAAAGACCCACCCCGTTCATGCGGCGGCTTTGCT
GCTGCACGGGTTCGTGGCCACGGCATCCTCCATCCCGCCCTGGGAGGCCG
GGCACTTGCTCACCCTCGCCTGTGGGCGGTTGGCGATAAGTGTGACGTTA
GGGGCGTACTCTTTCGCGCAAAATCCCGAGAACGAGTATTTGTTGATCCA
TGCACAGCCGGCGTGGAGCGCGCTGAGGACGCTGTGGGGGAGGCAGAGGG
AGAGGGTGGTTGAGGTGTTTAGGCGGGCGGCCGAGGGAGGGAGGGAAGGA
GGGGAGGGGGATGAGGAGTTTTGGAAGGAGATAGCGGGGAAGAGGTTTGG
CTTGGTAGGGGAGGAGGACTGGGTTGGGTTGTGCAGGGAAGGGGAGGGTG
ACAAGGGGAATGAATGA back to topprotein sequence of jgi.p|Nanoce1779_2|560891 >mRNA_10330-protein ID=mRNA_10330-protein|Name=jgi.p|Nanoce1779_2|560891|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MSAQDEERRKALKPAVNMASAVAIAKKVWGLRIDDDDDDPPKLLESYDDC
NFYISGTLPPSALDPSPTKQKYLLKVQNGVESATPQVLAFQHAMMSRLTS
AGLQCQRPVLLPPSLPPSSDNVEPHFIHYQTLPVLAGPPTRLAIRLLQWV
EGTSLVNISPPAFSSSSAPNLPPSPPPLALALLSAGRYLGKIDQALLNFN
HPGAHRQHMWDVRSLSQLRAWVPYVPEEGEKRRLVLSVIEAFEKEVVPTA
GFRQGVVMGDWNDANIIVDPLRPSLVLGAIDFGDSLWSWRINDVAIAMAY
AAVSSFGKTHPVHAAALLLHGFVATASSIPPWEAGHLLTLACGRLAISVT
LGAYSFAQNPENEYLLIHAQPAWSALRTLWGRQRERVVEVFRRAAEGGRE
GGEGDEEFWKEIAGKRFGLVGEEDWVGLCREGEGDKGNE* back to topmRNA from alignment at scaffold_54:2159..3941- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10330 ID=mRNA_10330|Name=jgi.p|Nanoce1779_2|560891|organism=Nannochloropsis oceanica|type=mRNA|length=1783bp|location=Sequence derived from alignment at scaffold_54:2159..3941- (Nannochloropsis oceanica)
GGCGCGGTGTTGCTGGTGCCTTCGATGATGAGGATGCTACTTGCCTTGCG
CTTAAGATTCCGCCAGATACGCAGCTGACCTGTGGATATGATCGTTGGGT
AAAAAGGAGGTCGGTGAGCCAGCTGGGACGACCTAGGTGCTGCTGATGTG
TGTCCCTGCCGTCGGTCACTGTCAGACCTCAAAGGCAATCTTCGCTTGTT
CTCATTTCCCGATTACGAAGAATTAGAAATTGGGCGAGCGTTTTGACCTT
TGTCTCATCCGCCCACACCACATCCCACGACAGGTAGCCACGGGCTCATG
TCGGCGCAGGACGAGGAGCGACGTAAGGTAAGCTATGAATTGTCTCAACT
ACCAATAAGACACATTCCCCACTTCTACCTCCTCACTCCCTCCTCGATCC
TCCTCCCCACATTCTCCCACATCACAGGCCCTCAAGCCTGCCGTAAACAT
GGCCTCCGCAGTAGCAATTGCCAAGAAAGTTTGGGGTCTACGCATTGACG
ACGATGATGATGATCCACCCAAGCTGCTCGAATCCTATGATGATTGTAAT
TTCTACATTTCCGGCACCCTTCCCCCCTCCGCACTCGACCCCTCTCCGAC
AAAACAAAAGTACCTGCTCAAGGTTCAAAACGGCGTCGAATCCGCCACGC
CCCAAGTTCTTGCCTTTCAACATGCCATGATGTCTCGCCTCACCTCGGCA
GGCCTCCAATGCCAACGGCCAGTCCTCCTTCCTCCCTCCCTCCCTCCATC
CTCCGACAACGTTGAGCCCCACTTCATCCATTATCAAACCCTCCCTGTCC
TAGCAGGGCCTCCCACTCGTCTCGCCATCCGTCTGTTGCAATGGGTGGAA
GGCACCTCCTTAGTCAACATATCTCCGCCCGCTTTTTCTTCATCATCAGC
ACCAAATCTCCCTCCCTCCCCTCCTCCCCTCGCCCTCGCTCTCCTCTCGG
CTGGGAGGTACTTAGGGAAAATAGACCAGGCATTACTGAACTTCAACCAC
CCTGGAGCCCACCGTCAGCATATGTGGGATGTGCGGAGCCTGAGTCAGTT
AAGGGCATGGGTCCCATACGTCCCGGAGGAAGGGGAAAAGCGACGGCTGG
TGCTGTCGGTCATCGAGGCATTCGAGAAGGAGGTGGTACCCGTGGCGGAG
AAAGGCGAGCAAGAAACAGCGCAAGAGGAGGAAAACAGGAGAACTGAAGA
GGAAAAGACAGCAGGCTTCCGTCAAGGCGTGGTGATGGGGGATTGGAACG
ACGCCAACATCATCGTGGACCCCCTTCGTCCCTCCCTCGTCCTGGGCGCC
ATCGACTTCGGCGATTCCCTCTGGAGCTGGAGGATTAACGATGTGGCCAT
TGCCATGGCCTACGCTGCCGTCTCTTCCTTTGGAAAGACCCACCCCGTTC
ATGCGGCGGCTTTGCTGCTGCACGGGTTCGTGGCCACGGCATCCTCCATC
CCGCCCTGGGAGGCCGGGCACTTGCTCACCCTCGCCTGTGGGCGGTTGGC
GATAAGTGTGACGTTAGGGGCGTACTCTTTCGCGCAAAATCCCGAGAACG
AGTATTTGTTGATCCATGCACAGCCGGCGTGGAGCGCGCTGAGGACGCTG
TGGGGGAGGCAGAGGGAGAGGGTGGTTGAGGTGTTTAGGCGGGCGGCCGA
GGGAGGGAGGGAAGGAGGGGAGGGGGATGAGGAGTTTTGGAAGGAGATAG
CGGGGAAGAGGTTTGGCTTGGTAGGGGAGGAGGACTGGGTTGGGTTGTGC
AGGGAAGGGGAGGGTGACAAGGGGAATGAATGA back to topCoding sequence (CDS) from alignment at scaffold_54:2159..3941- >mRNA_10330 ID=mRNA_10330|Name=jgi.p|Nanoce1779_2|560891|organism=Nannochloropsis oceanica|type=CDS|length=3960bp|location=Sequence derived from alignment at scaffold_54:2159..3941- (Nannochloropsis oceanica)
ACAGCAGGCTTCCGTCAAGGCGTGGTGATGGGGGATTGGAACGACGCCAA
CATCATCGTGGACCCCCTTCGTCCCTCCCTCGTCCTGGGCGCCATCGACT
TCGGCGATTCCCTCTGGAGCTGGAGGATTAACGATGTGGCCATTGCCATG
GCCTACGCTGCCGTCTCTTCCTTTGGAAAGACCCACCCCGTTCATGCGGC
GGCTTTGCTGCTGCACGGGTTCGTGGCCACGGCATCCTCCATCCCGCCCT
GGGAGGCCGGGCACTTGCTCACCCTCGCCTGTGGGCGGTTGGCGATAAGT
GTGACGTTAGGGGCGTACTCTTTCGCGCAAAATCCCGAGAACGAGTATTT
GTTGATCCATGCACAGCCGGCGTGGAGCGCGCTGAGGACGCTGTGGGGGA
GGCAGAGGGAGAGGGTGGTTGAGGTGTTTAGGCGGGCGGCCGAGGGAGGG
AGGGAAGGAGGGGAGGGGGATGAGGAGTTTTGGAAGGAGATAGCGGGGAA
GAGGTTTGGCTTGGTAGGGGAGGAGGACTGGGTTGGGTTGTGCAGGGAAG
GGGAGGGTGACAAGGGGAATGAATGAGCCCTCAAGCCTGCCGTAAACATG
GCCTCCGCAGTAGCAATTGCCAAGAAAGTTTGGGGTCTACGCATTGACGA
CGATGATGATGATCCACCCAAGCTGCTCGAATCCTATGATGATTGTAATT
TCTACATTTCCGGCACCCTTCCCCCCTCCGCACTCGACCCCTCTCCGACA
AAACAAAAGTACCTGCTCAAGGTTCAAAACGGCGTCGAATCCGCCACGCC
CCAAGTTCTTGCCTTTCAACATGCCATGATGTCTCGCCTCACCTCGGCAG
GCCTCCAATGCCAACGGCCAGTCCTCCTTCCTCCCTCCCTCCCTCCATCC
TCCGACAACGTTGAGCCCCACTTCATCCATTATCAAACCCTCCCTGTCCT
AGCAGGGCCTCCCACTCGTCTCGCCATCCGTCTGTTGCAATGGGTGGAAG
GCACCTCCTTAGTCAACATATCTCCGCCCGCTTTTTCTTCATCATCAGCA
CCAAATCTCCCTCCCTCCCCTCCTCCCCTCGCCCTCGCTCTCCTCTCGGC
TGGGAGGTACTTAGGGAAAATAGACCAGGCATTACTGAACTTCAACCACC
CTGGAGCCCACCGTCAGCATATGTGGGATGTGCGGAGCCTGAGTCAGTTA
AGGGCATGGGTCCCATACGTCCCGGAGGAAGGGGAAAAGCGACGGCTGGT
GCTGTCGGTCATCGAGGCATTCGAGAAGGAGGTGGTACCCATGTCGGCGC
AGGACGAGGAGCGACGTAAGACAGCAGGCTTCCGTCAAGGCGTGGTGATG
GGGGATTGGAACGACGCCAACATCATCGTGGACCCCCTTCGTCCCTCCCT
CGTCCTGGGCGCCATCGACTTCGGCGATTCCCTCTGGAGCTGGAGGATTA
ACGATGTGGCCATTGCCATGGCCTACGCTGCCGTCTCTTCCTTTGGAAAG
ACCCACCCCGTTCATGCGGCGGCTTTGCTGCTGCACGGGTTCGTGGCCAC
GGCATCCTCCATCCCGCCCTGGGAGGCCGGGCACTTGCTCACCCTCGCCT
GTGGGCGGTTGGCGATAAGTGTGACGTTAGGGGCGTACTCTTTCGCGCAA
AATCCCGAGAACGAGTATTTGTTGATCCATGCACAGCCGGCGTGGAGCGC
GCTGAGGACGCTGTGGGGGAGGCAGAGGGAGAGGGTGGTTGAGGTGTTTA
GGCGGGCGGCCGAGGGAGGGAGGGAAGGAGGGGAGGGGGATGAGGAGTTT
TGGAAGGAGATAGCGGGGAAGAGGTTTGGCTTGGTAGGGGAGGAGGACTG
GGTTGGGTTGTGCAGGGAAGGGGAGGGTGACAAGGGGAATGAATGAGCCC
TCAAGCCTGCCGTAAACATGGCCTCCGCAGTAGCAATTGCCAAGAAAGTT
TGGGGTCTACGCATTGACGACGATGATGATGATCCACCCAAGCTGCTCGA
ATCCTATGATGATTGTAATTTCTACATTTCCGGCACCCTTCCCCCCTCCG
CACTCGACCCCTCTCCGACAAAACAAAAGTACCTGCTCAAGGTTCAAAAC
GGCGTCGAATCCGCCACGCCCCAAGTTCTTGCCTTTCAACATGCCATGAT
GTCTCGCCTCACCTCGGCAGGCCTCCAATGCCAACGGCCAGTCCTCCTTC
CTCCCTCCCTCCCTCCATCCTCCGACAACGTTGAGCCCCACTTCATCCAT
TATCAAACCCTCCCTGTCCTAGCAGGGCCTCCCACTCGTCTCGCCATCCG
TCTGTTGCAATGGGTGGAAGGCACCTCCTTAGTCAACATATCTCCGCCCG
CTTTTTCTTCATCATCAGCACCAAATCTCCCTCCCTCCCCTCCTCCCCTC
GCCCTCGCTCTCCTCTCGGCTGGGAGGTACTTAGGGAAAATAGACCAGGC
ATTACTGAACTTCAACCACCCTGGAGCCCACCGTCAGCATATGTGGGATG
TGCGGAGCCTGAGTCAGTTAAGGGCATGGGTCCCATACGTCCCGGAGGAA
GGGGAAAAGCGACGGCTGGTGCTGTCGGTCATCGAGGCATTCGAGAAGGA
GGTGGTACCCATGTCGGCGCAGGACGAGGAGCGACGTAAGACAGCAGGCT
TCCGTCAAGGCGTGGTGATGGGGGATTGGAACGACGCCAACATCATCGTG
GACCCCCTTCGTCCCTCCCTCGTCCTGGGCGCCATCGACTTCGGCGATTC
CCTCTGGAGCTGGAGGATTAACGATGTGGCCATTGCCATGGCCTACGCTG
CCGTCTCTTCCTTTGGAAAGACCCACCCCGTTCATGCGGCGGCTTTGCTG
CTGCACGGGTTCGTGGCCACGGCATCCTCCATCCCGCCCTGGGAGGCCGG
GCACTTGCTCACCCTCGCCTGTGGGCGGTTGGCGATAAGTGTGACGTTAG
GGGCGTACTCTTTCGCGCAAAATCCCGAGAACGAGTATTTGTTGATCCAT
GCACAGCCGGCGTGGAGCGCGCTGAGGACGCTGTGGGGGAGGCAGAGGGA
GAGGGTGGTTGAGGTGTTTAGGCGGGCGGCCGAGGGAGGGAGGGAAGGAG
GGGAGGGGGATGAGGAGTTTTGGAAGGAGATAGCGGGGAAGAGGTTTGGC
TTGGTAGGGGAGGAGGACTGGGTTGGGTTGTGCAGGGAAGGGGAGGGTGA
CAAGGGGAATGAATGAGCCCTCAAGCCTGCCGTAAACATGGCCTCCGCAG
TAGCAATTGCCAAGAAAGTTTGGGGTCTACGCATTGACGACGATGATGAT
GATCCACCCAAGCTGCTCGAATCCTATGATGATTGTAATTTCTACATTTC
CGGCACCCTTCCCCCCTCCGCACTCGACCCCTCTCCGACAAAACAAAAGT
ACCTGCTCAAGGTTCAAAACGGCGTCGAATCCGCCACGCCCCAAGTTCTT
GCCTTTCAACATGCCATGATGTCTCGCCTCACCTCGGCAGGCCTCCAATG
CCAACGGCCAGTCCTCCTTCCTCCCTCCCTCCCTCCATCCTCCGACAACG
TTGAGCCCCACTTCATCCATTATCAAACCCTCCCTGTCCTAGCAGGGCCT
CCCACTCGTCTCGCCATCCGTCTGTTGCAATGGGTGGAAGGCACCTCCTT
AGTCAACATATCTCCGCCCGCTTTTTCTTCATCATCAGCACCAAATCTCC
CTCCCTCCCCTCCTCCCCTCGCCCTCGCTCTCCTCTCGGCTGGGAGGTAC
TTAGGGAAAATAGACCAGGCATTACTGAACTTCAACCACCCTGGAGCCCA
CCGTCAGCATATGTGGGATGTGCGGAGCCTGAGTCAGTTAAGGGCATGGG
TCCCATACGTCCCGGAGGAAGGGGAAAAGCGACGGCTGGTGCTGTCGGTC
ATCGAGGCATTCGAGAAGGAGGTGGTACCCATGTCGGCGCAGGACGAGGA
GCGACGTAAG back to top
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