jgi.p|Nanoce1779_2|674746, mRNA_10329 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|674746
Unique Name	mRNA_10329
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1701
Alignment location	scaffold_54:14..2054 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	674832
Track	FilteredModels2
ProteinId	674746

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_54	supercontig	scaffold_54:14..2054 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674746	gene_10329	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|674746	mRNA_10329-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10329	CDS_10329	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_54:14..2054+
coding sequence from alignment at scaffold_54:14..2054+

mRNA sequence

>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Nanoce1779_2|674746|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp
ATGAAAGCTGCTTTTGGCACCCCTGTGCAACTGCTGACCATCTTCCTTGT
CTTCTCCATCTGCTTCCTCACCCCTGTCGCCTACCTCATACTCCTTCGCG
GCCTCCTGACACCCCTCGTCGAGGCCTATATCACGCACGGCCAGCCCTTG
TCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTTCCTCAC
CCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCACTAGCCATCTTCT
CAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGCTCCTAC
CAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCCCTCCCT
CCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCGTCGCCT
CATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCCGAGTTGCGTTTC
CCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCACTATGGGCAGTAC
CTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGGCCTACGCCGTCT
GCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGAGGGGAG
GAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCCTTCGAATGACCC
CTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCTTCTGTT
TCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATCCGACTGGTAGGG
GTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGAGGGAGG
GCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGGGGGGCG
TGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGGGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGCAGGAGG
AGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCATCAAGGCCGCAG
CCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGGCAAGCA
GAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTCTCTCCT
CCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCCAAGTCG
ACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTTGCGTGCTTTGCC
GTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTGTCCACG
GCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTGTGGTGGGGATGG
TCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGACCTGTTGGAGGTC
TAAGGGAGCCAGCTGCTCCCTCCCTCCCTTCCTCCCTTCCTCCATCTCTT
CCTAGGGTCGTGGTGAAAGGCTCTGAAGAGCGAGGAGAAGAGTGTGTATA
GAATGGGAGGATGGAGAGACGGGACGGGGGAAGGGAGGGATGGAATCGAA
AAGGAAAATTATACAGAGGAGACAGGGAGAGAGGAAGGGAAGGAGAAAAG
GAGGGAGGAGAGGGAGGGAGTTAGATGACTCGTGTTGTTGATGACCAAAT
CGAGCCATGTTCATAAGGCACATGACAAAAAAGAGAATGAAAGTGAGACT
GATGCACATAGAAAGAAAGAAGAAAAAGAAGGAGAAACATGGCAAGAAAA
A

protein sequence of jgi.p|Nanoce1779_2|674746

>mRNA_10329-protein ID=mRNA_10329-protein|Name=jgi.p|Nanoce1779_2|674746|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MKAAFGTPVQLLTIFLVFSICFLTPVAYLILLRGLLTPLVEAYITHGQPL
SFLAKQLLICGLALFLTPLTLTSVGTIGALAIFSMAAIVILALVLGLRSY
QCLYTNGLPSPSLLPSLPPSLPSLLSALPVFVASFLCHFNLLPVYSELRF
PTRDRAHSLIHFTMGSTFILYTFVGLLGWAYAVCRDNEASEGGKEGEGGE
EGEVPDNLLLSFPSNDPLVNVARAALVVVLSFCFPLLLIPCRDALIRLVG
VVMVEWKGGRAGGREGGRGEGRGAKTPLLGGGGVEEGEEGERGREFQREG
GGGGGGGGRREGGGAGGGERPDDDAHGRSIKAAASAASLPPPPPLNPGQA
EQADQEQGRPRWLPSLLLTYLLVLFILSVAVQVDSVATIWAVLGSFACFA
VSFILPPLAYLKVGCPRQKIKRLWAWVICVVGMVMMAACTVQTIGDLLEV
*

mRNA from alignment at scaffold_54:14..2054+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Nanoce1779_2|674746|organism=Nannochloropsis oceanica|type=mRNA|length=2041bp|location=Sequence derived from alignment at scaffold_54:14..2054+ (Nannochloropsis oceanica)
ATGAAAGCTGGTGCGTAAGGGGGGATGGAAGGGAATAAAGAAATGGGGTA
ACGGTCAGCCATTGTTCTTATTTCTCATTCTCCCTCCATCCCTTCATCCC
TTCCTCCCTCCTTTCTTCCCTCCCTCCTCTCCCAAGCTTTTGGCACCCCT
GTGCAACTGCTGACCATCTTCCTTGTCTTCTCCATCTGCTTCCTCACCCC
TGTCGCCTACCTCATACTCCTTCGCGGCCTCCTGACACCCCTCGTCGAGG
CCTATATCACGCACGGCCAGGTACGTCCCTTCCCTTCCTTCCTCCCTCCC
TTTGCCTTTTCCTTTTCCGCACCAGCCTTCCTTCCTCCCGCCCTACTTTC
CCCCCCTCTTAGTTTCTCATACCTCCGTCACCACCATCCCTCCATCCCTC
CCTGCCTTCCTCCCCCACCACCATCCCTCCCTCCTTCCCTCACTCTCTCA
CTCCTTCCCTCCCTGCCTCCCTCCCTTCCTCCAGCCCTTGTCCTTCCTGG
CGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTTCCTCACCCCCCTGACC
CTCACCAGCGTCGGCACTATCGGGGCACTAGCCATCTTCTCAATGGCCGC
CATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGCTCCTACCAATGCCTCT
ACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCCCTCCCTCCCCCCCTCC
CTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCGTCGCCTCATTCCTCTG
TCACTTTAACCTCCTCCCGGTCTATTCCGAGTTGCGTTTCCCGACCCGAG
ACCGAGCTCATTCCCTCATCCATTTCACTATGGGCAGTACCTTCATACTG
TACACCTTCGTGGGCCTCCTCGGTTGGGCCTACGCCGTCTGCCGCGACAA
CGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGAGGGGAGGAGGGGGAGG
TACCGGATAATCTTCTCCTGTCATTCCCTTCGAATGACCCCTTAGTGAAC
GTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCTTCTGTTTCCCCCTCTT
GTTGATCCCCTGCAGGGATGCATTAATCCGACTGGTAGGGGTGGTGATGG
TGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGAGGGAGGGCGGGGAGAA
GGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGGGGGGCGTGGAGGAGGG
GGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGGGAAGGAGGAGGAGGAG
GAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGCAGGAGGAGGTGAGAGG
CCGGATGATGATGCCCATGGAAGAAGCATCAAGGCCGCAGCCTCCGCCGC
CTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGGCAAGCAGAACAAGCAG
ACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTCTCTCCTCCTCACCTAC
CTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCCAAGTCGACTCAGTGGC
AACCATATGGGCCGTACTCGGCTCGTTTGCGTGCTTTGCCGTCTCCTTCA
TCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTGTCCACGGCAGAAGATT
AAGCGGCTCTGGGCATGGGTGATATGTGTGGTGGGGATGGTCATGATGGC
TGCCTGCACGGTTCAGACGATTGGAGACCTGTTGGAGGTCTAAGGGAGCC
AGCTGCTCCCTCCCTCCCTTCCTCCCTTCCTCCATCTCTTCCTAGGGTCG
TGGTGAAAGGCTCTGAAGAGCGAGGAGAAGAGTGTGTATAGAATGGGAGG
ATGGAGAGACGGGACGGGGGAAGGGAGGGATGGAATCGAAAAGGAAAATT
ATACAGAGGAGACAGGGAGAGAGGAAGGGAAGGAGAAAAGGAGGGAGGAG
AGGGAGGGAGTTAGATGACTCGTGTTGTTGATGACCAAATCGAGCCATGT
TCATAAGGCACATGACAAAAAAGAGAATGAAAGTGAGACTGATGCACATA
GAAAGAAAGAAGAAAAAGAAGGAGAAACATGGCAAGAAAAA

Coding sequence (CDS) from alignment at scaffold_54:14..2054+

>mRNA_10329 ID=mRNA_10329|Name=jgi.p|Nanoce1779_2|674746|organism=Nannochloropsis oceanica|type=CDS|length=4059bp|location=Sequence derived from alignment at scaffold_54:14..2054+ (Nannochloropsis oceanica)
ATGAAAGCTGCTTTTGGCACCCCTGTGCAACTGCTGACCATCTTCCTTGT
CTTCTCCATCTGCTTCCTCACCCCTGTCGCCTACCTCATACTCCTTCGCG
GCCTCCTGACACCCCTCGTCGAGGCCTATATCACGCACGGCCAGCCCTTG
TCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTTCCTCAC
CCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCACTAGCCATCTTCT
CAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGCTCCTAC
CAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCCCTCCCT
CCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCGTCGCCT
CATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCCGAGTTGCGTTTC
CCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCACTATGGGCAGTAC
CTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGGCCTACGCCGTCT
GCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGAGGGGAG
GAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCCTTCGAATGACCC
CTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCTTCTGTT
TCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATCCGACTGGTAGGG
GTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGAGGGAGG
GCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGGGGGGCG
TGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGGGAAGGA
GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGCAGGAGG
AGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCATCAAGGCCGCAG
CCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGGCAAGCA
GAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTCTCTCCT
CCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCCAAGTCG
ACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTTGCGTGCTTTGCC
GTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTGTCCACG
GCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTGTGGTGGGGATGG
TCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGACCTGTTGGAGGTC
TAAATGAAAGCTGCTTTTGGCACCCCTGTGCAACTGCTGACCATCTTCCT
TGTCTTCTCCATCTGCTTCCTCACCCCTGTCGCCTACCTCATACTCCTTC
GCGGCCTCCTGACACCCCTCGTCGAGGCCTATATCACGCACGGCCAGCCC
TTGTCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTTCCT
CACCCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCACTAGCCATCT
TCTCAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGCTCC
TACCAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCCCTC
CCTCCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCGTCG
CCTCATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCCGAGTTGCGT
TTCCCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCACTATGGGCAG
TACCTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGGCCTACGCCG
TCTGCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGAGGG
GAGGAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCCTTCGAATGA
CCCCTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCTTCT
GTTTCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATCCGACTGGTA
GGGGTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGAGGG
AGGGCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGGGGG
GCGTGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGGGAA
GGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGCAGG
AGGAGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCATCAAGGCCG
CAGCCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGGCAA
GCAGAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTCTCT
CCTCCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCCAAG
TCGACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTTGCGTGCTTT
GCCGTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTGTCC
ACGGCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTGTGGTGGGGA
TGGTCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGACCTGTTGGAG
GTCTAAATGAAAGCTGCTTTTGGCACCCCTGTGCAACTGCTGACCATCTT
CCTTGTCTTCTCCATCTGCTTCCTCACCCCTGTCGCCTACCTCATACTCC
TTCGCGGCCTCCTGACACCCCTCGTCGAGGCCTATATCACGCACGGCCAG
CCCTTGTCCTTCCTGGCGAAGCAACTCCTCATCTGCGGCCTCGCCCTCTT
CCTCACCCCCCTGACCCTCACCAGCGTCGGCACTATCGGGGCACTAGCCA
TCTTCTCAATGGCCGCCATCGTCATCCTCGCCCTCGTCCTCGGTCTCCGC
TCCTACCAATGCCTCTACACCAACGGTCTTCCCTCCCCCTCCCTCCTCCC
CTCCCTCCCCCCCTCCCTCCCCTCCCTCCTCTCCGCCCTGCCCGTCTTCG
TCGCCTCATTCCTCTGTCACTTTAACCTCCTCCCGGTCTATTCCGAGTTG
CGTTTCCCGACCCGAGACCGAGCTCATTCCCTCATCCATTTCACTATGGG
CAGTACCTTCATACTGTACACCTTCGTGGGCCTCCTCGGTTGGGCCTACG
CCGTCTGCCGCGACAACGAAGCGAGTGAGGGAGGAAAGGAGGGCGAGGGA
GGGGAGGAGGGGGAGGTACCGGATAATCTTCTCCTGTCATTCCCTTCGAA
TGACCCCTTAGTGAACGTGGCCCGGGCGGCGTTGGTTGTCGTACTGTCCT
TCTGTTTCCCCCTCTTGTTGATCCCCTGCAGGGATGCATTAATCCGACTG
GTAGGGGTGGTGATGGTGGAGTGGAAGGGCGGGCGGGCGGGAGGGAGGGA
GGGAGGGCGGGGAGAAGGAAGGGGGGCCAAGACCCCGTTATTGGGCGGGG
GGGGCGTGGAGGAGGGGGAGGAGGGGGAGCGAGGAAGGGAATTCCAACGG
GAAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAGAAGGAGGAGGAGC
AGGAGGAGGTGAGAGGCCGGATGATGATGCCCATGGAAGAAGCATCAAGG
CCGCAGCCTCCGCCGCCTCCCTCCCTCCTCCTCCCCCCCTCAACCCCGGG
CAAGCAGAACAAGCAGACCAAGAACAAGGAAGGCCCCGCTGGCTTCCTTC
TCTCCTCCTCACCTACCTCCTCGTCCTCTTCATCCTGTCCGTCGCCGTCC
AAGTCGACTCAGTGGCAACCATATGGGCCGTACTCGGCTCGTTTGCGTGC
TTTGCCGTCTCCTTCATCCTCCCTCCTCTGGCCTACTTAAAGGTAGGTTG
TCCACGGCAGAAGATTAAGCGGCTCTGGGCATGGGTGATATGTGTGGTGG
GGATGGTCATGATGGCTGCCTGCACGGTTCAGACGATTGGAGACCTGTTG
GAGGTCTAA

Synonyms

Publications