jgi.p|Nanoce1779_2|611908, mRNA_10306 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611908
Unique NamemRNA_10306
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1347
Alignment locationscaffold_60:35171..36517 +

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Properties
Property NameValue
TranscriptId611994
TrackFilteredModels2
ProteinId611908
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:35171..36517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611908gene_10306Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611908mRNA_10306-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10306CDS_10306Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10306 ID=mRNA_10306|Name=jgi.p|Nanoce1779_2|611908|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
GAATCGAGACGGCCGCGGCGGCGCGTTCGTCCATCATCAGCCCCAGCATC
ATCCCCGATCATCCCTCCTCTTTGCCCTCACAATAGGAACATCACATCAC
ACAGGCCCTATCACTCACCCTCGACACAAGCAATGCCACCCGAAGCAGTG
CCTTCGATCGAAAAAAGATCCCGTGGCCGTCCCAAGGGCTCTCATAACAA
GCCCAAGGACGAGTCAAGTACAACTGCCTCATCACCAGGCACCAGCAACC
AAGCCAAGCCCAGCAGTCGCTGCCGCAAGGAAGTCAGTTCCATAACACTC
AACGCCCTCTCGCCCTCTTCAGCTTATTCTCCTCCATTATCAGCCTCTTC
TACTCCCTTTCCTTCCTCGTCGTCGTCCTCCTCCTCCTCGCCCAGCACCA
GCCCTCCTCCCCCCCTCAGCACAGGCAACCACTCGCACACCGCCGACAGC
GCCGTGGCCCTAAGCGGCGGGCTTAAGTGGGCAATGGGTATCATTGTCCT
CATATTATCCCCGCGCGTGGTGGGTGGAGCAGTTCATCGACTTACCGGCG
GCCGGGGCGGTCACCATCCCCCGAGAGCATTCCATCAGAACACTGACAAG
AACCTCTGGGCCAACATTGGCCGTTTCCTGACGGGTATCGGAGGAAAAGC
AGCGCTTACTACTGCAGTGGCCTCGATAGCCGTCAGTGTTTCGATTGCGC
CACCAGGCACGTTTCAGCTTTACCACACGGTGGGAGAAATCCCGGCGCTG
GCGTTCAGGGAGCAACGCACCCTTGTTGGCCGAGTCGTGCGTGTCTCGGA
CGGGGACACCATTCGGGTGCGACACACGCCGCTTGTGCCCCTGATAGGCA
ACACCCCCGACACAGGCAGACTCACGGAGGAGACCCTCATCGTTCGCCTG
GCCGGGATCGATGCTCCCGAAACCGCCAAAGGGAGAGGCAAAGGCCAACC
TTTCGCGGAGGAATCCAAGCGTTTCGTCACCACCAACGTCCTCGACCAGA
GGGTGGAAGTCAAGCTCTTATCCCGTGACCAGTACGCACGTGCCGTCTGT
TCCGTTTCCTATGGCCCATTTTCCTCGATCCCTTTCCCCTTCCCCTCCTT
CATGAAAAAAGACTTATCTTCCGAACTGTTGAAGGAGGGACTGGCTGTCG
TGTACCGTCAGAGGGGGGCGCAATACGATGGCAAGTATCGGGAAATGGAG
ATGTGGGAGGCCCAGGCCAAGATGAAGAGGAAAGGCATCTGGAGCAAGGA
GGGGGAGGTAGAGCTACCGCATCAGTACAAGGCGAGGACGAAGATAGAGG
AGGCAGAGAGGACTCTGACCCCTCGAGGAGCGTGAGAGGGAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|611908

>mRNA_10306-protein ID=mRNA_10306-protein|Name=jgi.p|Nanoce1779_2|611908|organism=Nannochloropsis oceanica|type=polypeptide|length=401bp
MPPEAVPSIEKRSRGRPKGSHNKPKDESSTTASSPGTSNQAKPSSRCRKE
VSSITLNALSPSSAYSPPLSASSTPFPSSSSSSSSSPSTSPPPPLSTGNH
SHTADSAVALSGGLKWAMGIIVLILSPRVVGGAVHRLTGGRGGHHPPRAF
HQNTDKNLWANIGRFLTGIGGKAALTTAVASIAVSVSIAPPGTFQLYHTV
GEIPALAFREQRTLVGRVVRVSDGDTIRVRHTPLVPLIGNTPDTGRLTEE
TLIVRLAGIDAPETAKGRGKGQPFAEESKRFVTTNVLDQRVEVKLLSRDQ
YARAVCSVSYGPFSSIPFPFPSFMKKDLSSELLKEGLAVVYRQRGAQYDG
KYREMEMWEAQAKMKRKGIWSKEGEVELPHQYKARTKIEEAERTLTPRGA
*
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mRNA from alignment at scaffold_60:35171..36517+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10306 ID=mRNA_10306|Name=jgi.p|Nanoce1779_2|611908|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_60:35171..36517+ (Nannochloropsis oceanica)
GAATCGAGACGGCCGCGGCGGCGCGTTCGTCCATCATCAGCCCCAGCATC
ATCCCCGATCATCCCTCCTCTTTGCCCTCACAATAGGAACATCACATCAC
ACAGGCCCTATCACTCACCCTCGACACAAGCAATGCCACCCGAAGCAGTG
CCTTCGATCGAAAAAAGATCCCGTGGCCGTCCCAAGGGCTCTCATAACAA
GCCCAAGGACGAGTCAAGTACAACTGCCTCATCACCAGGCACCAGCAACC
AAGCCAAGCCCAGCAGTCGCTGCCGCAAGGAAGTCAGTTCCATAACACTC
AACGCCCTCTCGCCCTCTTCAGCTTATTCTCCTCCATTATCAGCCTCTTC
TACTCCCTTTCCTTCCTCGTCGTCGTCCTCCTCCTCCTCGCCCAGCACCA
GCCCTCCTCCCCCCCTCAGCACAGGCAACCACTCGCACACCGCCGACAGC
GCCGTGGCCCTAAGCGGCGGGCTTAAGTGGGCAATGGGTATCATTGTCCT
CATATTATCCCCGCGCGTGGTGGGTGGAGCAGTTCATCGACTTACCGGCG
GCCGGGGCGGTCACCATCCCCCGAGAGCATTCCATCAGAACACTGACAAG
AACCTCTGGGCCAACATTGGCCGTTTCCTGACGGGTATCGGAGGAAAAGC
AGCGCTTACTACTGCAGTGGCCTCGATAGCCGTCAGTGTTTCGATTGCGC
CACCAGGCACGTTTCAGCTTTACCACACGGTGGGAGAAATCCCGGCGCTG
GCGTTCAGGGAGCAACGCACCCTTGTTGGCCGAGTCGTGCGTGTCTCGGA
CGGGGACACCATTCGGGTGCGACACACGCCGCTTGTGCCCCTGATAGGCA
ACACCCCCGACACAGGCAGACTCACGGAGGAGACCCTCATCGTTCGCCTG
GCCGGGATCGATGCTCCCGAAACCGCCAAAGGGAGAGGCAAAGGCCAACC
TTTCGCGGAGGAATCCAAGCGTTTCGTCACCACCAACGTCCTCGACCAGA
GGGTGGAAGTCAAGCTCTTATCCCGTGACCAGTACGCACGTGCCGTCTGT
TCCGTTTCCTATGGCCCATTTTCCTCGATCCCTTTCCCCTTCCCCTCCTT
CATGAAAAAAGACTTATCTTCCGAACTGTTGAAGGAGGGACTGGCTGTCG
TGTACCGTCAGAGGGGGGCGCAATACGATGGCAAGTATCGGGAAATGGAG
ATGTGGGAGGCCCAGGCCAAGATGAAGAGGAAAGGCATCTGGAGCAAGGA
GGGGGAGGTAGAGCTACCGCATCAGTACAAGGCGAGGACGAAGATAGAGG
AGGCAGAGAGGACTCTGACCCCTCGAGGAGCGTGAGAGGGAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_60:35171..36517+

>mRNA_10306 ID=mRNA_10306|Name=jgi.p|Nanoce1779_2|611908|organism=Nannochloropsis oceanica|type=CDS|length=1203bp|location=Sequence derived from alignment at scaffold_60:35171..36517+ (Nannochloropsis oceanica)
ATGCCACCCGAAGCAGTGCCTTCGATCGAAAAAAGATCCCGTGGCCGTCC
CAAGGGCTCTCATAACAAGCCCAAGGACGAGTCAAGTACAACTGCCTCAT
CACCAGGCACCAGCAACCAAGCCAAGCCCAGCAGTCGCTGCCGCAAGGAA
GTCAGTTCCATAACACTCAACGCCCTCTCGCCCTCTTCAGCTTATTCTCC
TCCATTATCAGCCTCTTCTACTCCCTTTCCTTCCTCGTCGTCGTCCTCCT
CCTCCTCGCCCAGCACCAGCCCTCCTCCCCCCCTCAGCACAGGCAACCAC
TCGCACACCGCCGACAGCGCCGTGGCCCTAAGCGGCGGGCTTAAGTGGGC
AATGGGTATCATTGTCCTCATATTATCCCCGCGCGTGGTGGGTGGAGCAG
TTCATCGACTTACCGGCGGCCGGGGCGGTCACCATCCCCCGAGAGCATTC
CATCAGAACACTGACAAGAACCTCTGGGCCAACATTGGCCGTTTCCTGAC
GGGTATCGGAGGAAAAGCAGCGCTTACTACTGCAGTGGCCTCGATAGCCG
TCAGTGTTTCGATTGCGCCACCAGGCACGTTTCAGCTTTACCACACGGTG
GGAGAAATCCCGGCGCTGGCGTTCAGGGAGCAACGCACCCTTGTTGGCCG
AGTCGTGCGTGTCTCGGACGGGGACACCATTCGGGTGCGACACACGCCGC
TTGTGCCCCTGATAGGCAACACCCCCGACACAGGCAGACTCACGGAGGAG
ACCCTCATCGTTCGCCTGGCCGGGATCGATGCTCCCGAAACCGCCAAAGG
GAGAGGCAAAGGCCAACCTTTCGCGGAGGAATCCAAGCGTTTCGTCACCA
CCAACGTCCTCGACCAGAGGGTGGAAGTCAAGCTCTTATCCCGTGACCAG
TACGCACGTGCCGTCTGTTCCGTTTCCTATGGCCCATTTTCCTCGATCCC
TTTCCCCTTCCCCTCCTTCATGAAAAAAGACTTATCTTCCGAACTGTTGA
AGGAGGGACTGGCTGTCGTGTACCGTCAGAGGGGGGCGCAATACGATGGC
AAGTATCGGGAAATGGAGATGTGGGAGGCCCAGGCCAAGATGAAGAGGAA
AGGCATCTGGAGCAAGGAGGGGGAGGTAGAGCTACCGCATCAGTACAAGG
CGAGGACGAAGATAGAGGAGGCAGAGAGGACTCTGACCCCTCGAGGAGCG
TGA
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Synonyms
Publications