jgi.p|Nanoce1779_2|611877, mRNA_10292 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|611877
Unique NamemRNA_10292
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1748
Alignment locationscaffold_60:3985..5732 -

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Properties
Property NameValue
TranscriptId611963
TrackFilteredModels2
ProteinId611877
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_60supercontigscaffold_60:3985..5732 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611877gene_10292Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10292CDS_10292Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|611877mRNA_10292-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10292 ID=mRNA_10292|Name=jgi.p|Nanoce1779_2|611877|organism=Nannochloropsis oceanica|type=mRNA|length=1748bp
ACAGGACATACGCTCTCCTCCCGGCACTTAAATTCCTTTCGTGCAGCAAG
TCAGCACCACCTCCATAGACATCCATTATGCCTTCGAAGGATTCCTCACC
GTCTAAGCCATTTTTTGGCATGAAGCTCTTCTCCCCCAACCTATGGCGCT
CGTCCGCCTCGTCTCCGTCGCGTCGCTCGTCCCAAGACCGACAACCGTCC
CTTTTGCCCTTGCAAGCCCCGTCACACTCGCCTTCAACCCAGATCCAGGC
TCCTCTGGCCTCTTCCATATCTTTTGGTGACTTCTCGCGCGCAGATAGCA
CCACGCCAAATAATATGTGCTCCTCCTCTTCCTTGTCATCCTCTCCTTTG
GCTCAAACGTCCTCCTTGGCTCAAATTACCCCTCCACCGCCCCTTCTGAA
CGTGATCCGAGCAAAGGACCCCAAGGCATTCAAGGGCAAAGCAGCTTTGA
CCCGGTACCTGGATGCGATGGACCAAGAGGAAGGCAGGGGCATGCAAACG
GGGGGATTACTCGCGGATCCAACGCAGGCCTCCTCGGCCAAGCACACCGA
AATCCCCACTATCCGCTACAGTAGCGAGTTAGCCAAGCAGAATTTCTCCT
TTCTCCGCATCATTTTTTGCGGGAGAAATGGGATGGGGTCCTTTTGGTTT
ATCAAGAAAATTCTTCCACAGTTGGTTGTCGGCATCTTGCTCAACTTGGT
TGTAGAGTGGATTGACCTGAAGCATACGGGCTGGTGGGCCATTCGTGCTG
ACACGCAGCGACTGCACGGGTTCGTTGGGGCAGTCCTGGCTTTTGTCTTG
GTTTTTCGGAGCAATGCTAGTTATGACCGCTACTATGAGGCACGCAAAAC
GCTGGGTCTGATTACAAACCAATGCCGCGAAGCGGTTCTGGAGACGTGCT
CCATGTTCGTGATTAAAGATGAAGGTGAGCACAACAACCTGTATAGGAAC
GAGATTCGCAGAAAGTTCCTGGTCATGATAGCATTCATCCGGCAAAACAT
TCGCGAGTCCCACGTGGGGTTCATGCCCAACTCTTCCGAAAGCAATACGC
CTTTCCACGAAGGCACCAACTACATAAGGGATCCGATCCGGCCCCGCCTG
TGCGACCTGCTGACGCCTTCCGAGGTCGAAGGTTATGTCAACGTCCAACC
TTCGGCGCGCGCGGCGTGTGTGGCCAGTGAGATCAAGAGCATTGCGCAGC
TTTTGGCGCGGAACGTGGAGTTCAGTATTTTGTATTACAGCAAGATAAGC
CAGTGTCTGCAGTTGTCTTTAGACGCACAAGAGACTCTGTACCGCATCGT
GACCACGCCGGTTCCCTATCCCTACGCCTGGATTCTGAATGTGATGCTGG
TGGTGTTTATCTACTCCGTACCTTTCCTGTACGACTCTCAGCGCGGTGGA
TCTTATTTTGGGATGATCATTTTGGTAGTGGCGTACTTTGGGTGCCAGCG
AATTGCGCAGCAGTGCGAGAATCCCTTGGAGTGGGACGCCTGCGATCTCG
ACGTCGAGCTCTTGACCATGAGTAACCATGACGAGACGCGCGACATTTCC
AACTTTACGCACAGCCTCAACAAGGGCTTCATCCCCAGCAATATTCGTCG
CACTGCCCCTGAGCCTCCCGCGCCTGTCCCCGATTTGGCCGCTTCACAAT
CCCCGCCGGAGGCAACAACGCCGACCAAGCCTCCCCCTGAGTCACCCGAG
TCGGCTGCGGCAGCGCCGTCGTCGTCCGTGCCTGCTGATGCAAAGTAG
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protein sequence of jgi.p|Nanoce1779_2|611877

>mRNA_10292-protein ID=mRNA_10292-protein|Name=jgi.p|Nanoce1779_2|611877|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MPSKDSSPSKPFFGMKLFSPNLWRSSASSPSRRSSQDRQPSLLPLQAPSH
SPSTQIQAPLASSISFGDFSRADSTTPNNMCSSSSLSSSPLAQTSSLAQI
TPPPPLLNVIRAKDPKAFKGKAALTRYLDAMDQEEGRGMQTGGLLADPTQ
ASSAKHTEIPTIRYSSELAKQNFSFLRIIFCGRNGMGSFWFIKKILPQLV
VGILLNLVVEWIDLKHTGWWAIRADTQRLHGFVGAVLAFVLVFRSNASYD
RYYEARKTLGLITNQCREAVLETCSMFVIKDEGEHNNLYRNEIRRKFLVM
IAFIRQNIRESHVGFMPNSSESNTPFHEGTNYIRDPIRPRLCDLLTPSEV
EGYVNVQPSARAACVASEIKSIAQLLARNVEFSILYYSKISQCLQLSLDA
QETLYRIVTTPVPYPYAWILNVMLVVFIYSVPFLYDSQRGGSYFGMIILV
VAYFGCQRIAQQCENPLEWDACDLDVELLTMSNHDETRDISNFTHSLNKG
FIPSNIRRTAPEPPAPVPDLAASQSPPEATTPTKPPPESPESAAAAPSSS
VPADAK*
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mRNA from alignment at scaffold_60:3985..5732-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10292 ID=mRNA_10292|Name=jgi.p|Nanoce1779_2|611877|organism=Nannochloropsis oceanica|type=mRNA|length=1748bp|location=Sequence derived from alignment at scaffold_60:3985..5732- (Nannochloropsis oceanica)
ACAGGACATACGCTCTCCTCCCGGCACTTAAATTCCTTTCGTGCAGCAAG
TCAGCACCACCTCCATAGACATCCATTATGCCTTCGAAGGATTCCTCACC
GTCTAAGCCATTTTTTGGCATGAAGCTCTTCTCCCCCAACCTATGGCGCT
CGTCCGCCTCGTCTCCGTCGCGTCGCTCGTCCCAAGACCGACAACCGTCC
CTTTTGCCCTTGCAAGCCCCGTCACACTCGCCTTCAACCCAGATCCAGGC
TCCTCTGGCCTCTTCCATATCTTTTGGTGACTTCTCGCGCGCAGATAGCA
CCACGCCAAATAATATGTGCTCCTCCTCTTCCTTGTCATCCTCTCCTTTG
GCTCAAACGTCCTCCTTGGCTCAAATTACCCCTCCACCGCCCCTTCTGAA
CGTGATCCGAGCAAAGGACCCCAAGGCATTCAAGGGCAAAGCAGCTTTGA
CCCGGTACCTGGATGCGATGGACCAAGAGGAAGGCAGGGGCATGCAAACG
GGGGGATTACTCGCGGATCCAACGCAGGCCTCCTCGGCCAAGCACACCGA
AATCCCCACTATCCGCTACAGTAGCGAGTTAGCCAAGCAGAATTTCTCCT
TTCTCCGCATCATTTTTTGCGGGAGAAATGGGATGGGGTCCTTTTGGTTT
ATCAAGAAAATTCTTCCACAGTTGGTTGTCGGCATCTTGCTCAACTTGGT
TGTAGAGTGGATTGACCTGAAGCATACGGGCTGGTGGGCCATTCGTGCTG
ACACGCAGCGACTGCACGGGTTCGTTGGGGCAGTCCTGGCTTTTGTCTTG
GTTTTTCGGAGCAATGCTAGTTATGACCGCTACTATGAGGCACGCAAAAC
GCTGGGTCTGATTACAAACCAATGCCGCGAAGCGGTTCTGGAGACGTGCT
CCATGTTCGTGATTAAAGATGAAGGTGAGCACAACAACCTGTATAGGAAC
GAGATTCGCAGAAAGTTCCTGGTCATGATAGCATTCATCCGGCAAAACAT
TCGCGAGTCCCACGTGGGGTTCATGCCCAACTCTTCCGAAAGCAATACGC
CTTTCCACGAAGGCACCAACTACATAAGGGATCCGATCCGGCCCCGCCTG
TGCGACCTGCTGACGCCTTCCGAGGTCGAAGGTTATGTCAACGTCCAACC
TTCGGCGCGCGCGGCGTGTGTGGCCAGTGAGATCAAGAGCATTGCGCAGC
TTTTGGCGCGGAACGTGGAGTTCAGTATTTTGTATTACAGCAAGATAAGC
CAGTGTCTGCAGTTGTCTTTAGACGCACAAGAGACTCTGTACCGCATCGT
GACCACGCCGGTTCCCTATCCCTACGCCTGGATTCTGAATGTGATGCTGG
TGGTGTTTATCTACTCCGTACCTTTCCTGTACGACTCTCAGCGCGGTGGA
TCTTATTTTGGGATGATCATTTTGGTAGTGGCGTACTTTGGGTGCCAGCG
AATTGCGCAGCAGTGCGAGAATCCCTTGGAGTGGGACGCCTGCGATCTCG
ACGTCGAGCTCTTGACCATGAGTAACCATGACGAGACGCGCGACATTTCC
AACTTTACGCACAGCCTCAACAAGGGCTTCATCCCCAGCAATATTCGTCG
CACTGCCCCTGAGCCTCCCGCGCCTGTCCCCGATTTGGCCGCTTCACAAT
CCCCGCCGGAGGCAACAACGCCGACCAAGCCTCCCCCTGAGTCACCCGAG
TCGGCTGCGGCAGCGCCGTCGTCGTCCGTGCCTGCTGATGCAAAGTAG
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Coding sequence (CDS) from alignment at scaffold_60:3985..5732-

>mRNA_10292 ID=mRNA_10292|Name=jgi.p|Nanoce1779_2|611877|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_60:3985..5732- (Nannochloropsis oceanica)
ATGCCTTCGAAGGATTCCTCACCGTCTAAGCCATTTTTTGGCATGAAGCT
CTTCTCCCCCAACCTATGGCGCTCGTCCGCCTCGTCTCCGTCGCGTCGCT
CGTCCCAAGACCGACAACCGTCCCTTTTGCCCTTGCAAGCCCCGTCACAC
TCGCCTTCAACCCAGATCCAGGCTCCTCTGGCCTCTTCCATATCTTTTGG
TGACTTCTCGCGCGCAGATAGCACCACGCCAAATAATATGTGCTCCTCCT
CTTCCTTGTCATCCTCTCCTTTGGCTCAAACGTCCTCCTTGGCTCAAATT
ACCCCTCCACCGCCCCTTCTGAACGTGATCCGAGCAAAGGACCCCAAGGC
ATTCAAGGGCAAAGCAGCTTTGACCCGGTACCTGGATGCGATGGACCAAG
AGGAAGGCAGGGGCATGCAAACGGGGGGATTACTCGCGGATCCAACGCAG
GCCTCCTCGGCCAAGCACACCGAAATCCCCACTATCCGCTACAGTAGCGA
GTTAGCCAAGCAGAATTTCTCCTTTCTCCGCATCATTTTTTGCGGGAGAA
ATGGGATGGGGTCCTTTTGGTTTATCAAGAAAATTCTTCCACAGTTGGTT
GTCGGCATCTTGCTCAACTTGGTTGTAGAGTGGATTGACCTGAAGCATAC
GGGCTGGTGGGCCATTCGTGCTGACACGCAGCGACTGCACGGGTTCGTTG
GGGCAGTCCTGGCTTTTGTCTTGGTTTTTCGGAGCAATGCTAGTTATGAC
CGCTACTATGAGGCACGCAAAACGCTGGGTCTGATTACAAACCAATGCCG
CGAAGCGGTTCTGGAGACGTGCTCCATGTTCGTGATTAAAGATGAAGGTG
AGCACAACAACCTGTATAGGAACGAGATTCGCAGAAAGTTCCTGGTCATG
ATAGCATTCATCCGGCAAAACATTCGCGAGTCCCACGTGGGGTTCATGCC
CAACTCTTCCGAAAGCAATACGCCTTTCCACGAAGGCACCAACTACATAA
GGGATCCGATCCGGCCCCGCCTGTGCGACCTGCTGACGCCTTCCGAGGTC
GAAGGTTATGTCAACGTCCAACCTTCGGCGCGCGCGGCGTGTGTGGCCAG
TGAGATCAAGAGCATTGCGCAGCTTTTGGCGCGGAACGTGGAGTTCAGTA
TTTTGTATTACAGCAAGATAAGCCAGTGTCTGCAGTTGTCTTTAGACGCA
CAAGAGACTCTGTACCGCATCGTGACCACGCCGGTTCCCTATCCCTACGC
CTGGATTCTGAATGTGATGCTGGTGGTGTTTATCTACTCCGTACCTTTCC
TGTACGACTCTCAGCGCGGTGGATCTTATTTTGGGATGATCATTTTGGTA
GTGGCGTACTTTGGGTGCCAGCGAATTGCGCAGCAGTGCGAGAATCCCTT
GGAGTGGGACGCCTGCGATCTCGACGTCGAGCTCTTGACCATGAGTAACC
ATGACGAGACGCGCGACATTTCCAACTTTACGCACAGCCTCAACAAGGGC
TTCATCCCCAGCAATATTCGTCGCACTGCCCCTGAGCCTCCCGCGCCTGT
CCCCGATTTGGCCGCTTCACAATCCCCGCCGGAGGCAACAACGCCGACCA
AGCCTCCCCCTGAGTCACCCGAGTCGGCTGCGGCAGCGCCGTCGTCGTCC
GTGCCTGCTGATGCAAAGTAG
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Synonyms
Publications