jgi.p|Nanoce1779_2|610552, mRNA_10246 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610552
Unique NamemRNA_10246
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length478
Alignment locationscaffold_50:119399..120106 +

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Properties
Property NameValue
TranscriptId610638
TrackFilteredModels2
ProteinId610552
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:119399..120106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610552gene_10246Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610552mRNA_10246-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10246CDS_10246Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10246 ID=mRNA_10246|Name=jgi.p|Nanoce1779_2|610552|organism=Nannochloropsis oceanica|type=mRNA|length=478bp
GTGTGAGAGAGTGAAACTCTTTCAATGAGTCAAGATTCTTCGGTGAACCT
CCTCATCCCCCTCCTCCTCCCCCTCCTCCTCCTCCTCATCCTCCTCCTCT
CCCCCATGACCCATAATCATAAATTTCCTCTATCTGTTGTCATATCAAAC
TCACATCCTCCTCACGTCAAACACATAACCTTTCACTATCTCGCTCCTCC
CTTCCATTCCTCTTACCGGTATTCGGACTTCGTCCTTCCTCCGTGTCAAG
GACTGCCCCTCCTCCCCCTTCTCCTTCCCTTCTTCGAGGCGGATGATGGG
CGCTACTCGTCGTCTTTGGTAATGTCGACCCAGCACTCTGCGTACAATCT
CCACCAGTGGCCTGCAGAACTCGGTCTTCCTGTGTAGGAGGCGTGGTGCG
CCCTTCCCTTGTGCGCCGCAAAATGCTCGCCAACAGAACGACTGCTTCGT
CTGACTCCCGCATGGCCGCGAGTGCTGT
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protein sequence of jgi.p|Nanoce1779_2|610552

>mRNA_10246-protein ID=mRNA_10246-protein|Name=jgi.p|Nanoce1779_2|610552|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MSQDSSVNLLIPLLLPLLLLLILLLSPMTHNHKFPLSVVISNSHPPHVKH
ITFHYLAPPFHSSYRYSDFVLPPCQGLPLLPLLLPFFEADDGRYSSSLVM
STQHSAYNLHQWPAELGLPV*
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mRNA from alignment at scaffold_50:119399..120106+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10246 ID=mRNA_10246|Name=jgi.p|Nanoce1779_2|610552|organism=Nannochloropsis oceanica|type=mRNA|length=708bp|location=Sequence derived from alignment at scaffold_50:119399..120106+ (Nannochloropsis oceanica)
GTGTGAGAGAGTGAAACTCTTTCAATGAGTCAAGATTCTTCGGTGAACCT
CCTCATCCCCCTCCTCCTCCCCCTCCTCCTCCTCCTCATCCTCCTCCTCT
CCCCCATGACCCATAATCATAAATTTCCTCTATCTGTTGTCATATCAAAC
TCACATCCTCCTCACGTCAAACACATAACCTTTCACTATCTCGCTCCTCC
CTTCCATTCCTCTTACCGGTATTCGGACTTCGTCCTTCCTCCGTGTCAAG
GACTGCCCCTCCTCCCCCTTCTCCTTCCCTTCTTCGAGGCGGATGATGGG
CGCTACTCGTCGTCTTTGGTAATGTCGACCCAGCACTCTGTAAGAATGGG
TGCATGTCGTCCATTTATACATTCGTTCATGCGTCCGATCAGTCTAGAGA
GAATATATGTCCCTCGAGTTGGTCGGCCATATACAATGATTCTTACCTGC
GTACAATCTCCACCAGTGGCCTGCAGAACTCGGTCTTCCTGTGTAGGAGG
CGTGGTGCGCCCTTCCCTGTGTGAGTGAGGGTAGGGGCGCGGCGCGGAAC
GACACAAGTAAAAATAGAGGGCGGTGAATGAGGAAAAGGCGATTTGATTG
CCGAGCTGAGAGGACTGAAAAACCCACCATTATTTACCTTGTGCGCCGCA
AAATGCTCGCCAACAGAACGACTGCTTCGTCTGACTCCCGCATGGCCGCG
AGTGCTGT
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Coding sequence (CDS) from alignment at scaffold_50:119399..120106+

>mRNA_10246 ID=mRNA_10246|Name=jgi.p|Nanoce1779_2|610552|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_50:119399..120106+ (Nannochloropsis oceanica)
ATGAGTCAAGATTCTTCGGTGAACCTCCTCATCCCCCTCCTCCTCCCCCT
CCTCCTCCTCCTCATCCTCCTCCTCTCCCCCATGACCCATAATCATAAAT
TTCCTCTATCTGTTGTCATATCAAACTCACATCCTCCTCACGTCAAACAC
ATAACCTTTCACTATCTCGCTCCTCCCTTCCATTCCTCTTACCGGTATTC
GGACTTCGTCCTTCCTCCGTGTCAAGGACTGCCCCTCCTCCCCCTTCTCC
TTCCCTTCTTCGAGGCGGATGATGGGCGCTACTCGTCGTCTTTGGTAATG
TCGACCCAGCACTCTGCGTACAATCTCCACCAGTGGCCTGCAGAACTCGG
TCTTCCTGTGTAGATGAGTCAAGATTCTTCGGTGAACCTCCTCATCCCCC
TCCTCCTCCCCCTCCTCCTCCTCCTCATCCTCCTCCTCTCCCCCATGACC
CATAATCATAAATTTCCTCTATCTGTTGTCATATCAAACTCACATCCTCC
TCACGTCAAACACATAACCTTTCACTATCTCGCTCCTCCCTTCCATTCCT
CTTACCGGTATTCGGACTTCGTCCTTCCTCCGTGTCAAGGACTGCCCCTC
CTCCCCCTTCTCCTTCCCTTCTTCGAGGCGGATGATGGGCGCTACTCGTC
GTCTTTGGTAATGTCGACCCAGCACTCTGCGTACAATCTCCACCAGTGGC
CTGCAGAACTCGGTCTTCCTGTGTAG
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Synonyms
Publications