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Properties
| Property Name | Value |
|---|
| TranscriptId | 610634 |
| Track | FilteredModels2 |
| ProteinId | 610548 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:116905..119284 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10245 ID=mRNA_10245|Name=jgi.p|Nanoce1779_2|610548|organism=Nannochloropsis oceanica|type=mRNA|length=1203bp
CGCTACTGTCGCCAGAGCCCATCCTCACGACGGGGAGCAGCAGCAGCAGC
AGCAGCAGCGCAAGGGAACTCGGCGACCGCGAGCCCGGCCGTTAGACTAC
GAGGAGGAAGCGAAGAGGAGACATATGCCTGCAGTAACAGCAATAGCGGC
AGCAACAGCAACAGCAATAGCAGGAGGAGGAATGGGAGGAGAAGAAGGAG
AATGGAGGGAGGGAGAAAACGAAGGAGAGGGGTTGCTGGTGACGAGGTTT
AGTGATATGGAGAGTAAAGGGGACAGTGTCTGCGCCCGTCCCTGGCACCT
CATGGACTACGACAGCGCGCTAATCCGCATGGCCAGACATAATGTCATCA
CCGCCATAGCCAACCTCATACAAGGAGGAACCATAGACCTCATCAAGGCC
CACGATTTCATGTATATGGTCCGATGCTTCTCCAAAAGCACCGGACGAGA
CGTCAGCTACGGCCTGGGCGAGGCCCTGGAGGCCATGCTCTCCTCCTACC
CACCCCAGCAGCAGCAGCAGCAGCAGACGCTGCCGGGCTACTCCCTTGTC
CATCATACCACCGCAGCTGCTCTCGCCGCCCGCCTGGCCAAAGACGAGAC
TGCGTGCTACCTCATCAGTAGAGGCGGCTTCGGGAAGCATGTGGTTGAGT
GCAATCCGCGCATGAGCGCTCTCTTCCTCCCTGCCGGTGAGATCCAAGGG
CTGGTGCGACAGACAGGCTTGGGCACCTCTGCGTTCTGGGGCAGGTTTGT
GTGTGCCGAGTCCCTCTTGCAGTTGCACTCGGCTGTTGCCACAGTCACCC
TCGCCCAGGGGAGGAAGTCACAGGTCGACGTGGTGCTGCAGTGCAAAACC
CTCCAAGGCACCAAAGTACGATGCGTCGCCAGCGTCGGTTTCCATTGCGA
CTCAGATGTACGTCCTTGCCTCCCTCTCTCCCGTTCTCTCGCCCTCCCTT
CCTCCTTTCTTCCCTTCCATACCTTTTGCATGGGTCAGCCTCCTTGCCCC
CCACACAGCCCAATCCTTCCCTCCCTCCCTCCCTCCCAACCTTCCTCCCT
CCCTCCTTCTCTAGGGCAAGGCGATTCTCATCCTCCGCCTTTGGCCGCTT
GTCGCGAGGAGCTTTAGGGTCGACCGGGCCCCTCCCTCCCTCCCTCCCTA
GTCTGCAGCGGGCGGGGCAGAGTGCGAGTGGAAGCAGCACCAGCAGCGGT
GGC back to topprotein sequence of jgi.p|Nanoce1779_2|610548 >mRNA_10245-protein ID=mRNA_10245-protein|Name=jgi.p|Nanoce1779_2|610548|organism=Nannochloropsis oceanica|type=polypeptide|length=331bp
MPAVTAIAAATATAIAGGGMGGEEGEWREGENEGEGLLVTRFSDMESKGD
SVCARPWHLMDYDSALIRMARHNVITAIANLIQGGTIDLIKAHDFMYMVR
CFSKSTGRDVSYGLGEALEAMLSSYPPQQQQQQQTLPGYSLVHHTTAAAL
AARLAKDETACYLISRGGFGKHVVECNPRMSALFLPAGEIQGLVRQTGLG
TSAFWGRFVCAESLLQLHSAVATVTLAQGRKSQVDVVLQCKTLQGTKVRC
VASVGFHCDSDVRPCLPLSRSLALPSSFLPFHTFCMGQPPCPPHSPILPS
LPPSQPSSLPPSLGQGDSHPPPLAACREEL* back to topmRNA from alignment at scaffold_50:116905..119284- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10245 ID=mRNA_10245|Name=jgi.p|Nanoce1779_2|610548|organism=Nannochloropsis oceanica|type=mRNA|length=2380bp|location=Sequence derived from alignment at scaffold_50:116905..119284- (Nannochloropsis oceanica)
CGCTACTGTCGCCAGAGCCCATCCTCACGACGGGGAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGAAGCAGCAGCGGGATCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCGCAAGGGAACTCGGCGACCGCGAGCCCGGCCGTTAGACTA
CGAGGAGGAAGCGAAGAGGAGACATATGCCTGCAGTAACAGCAATAGCGG
CAGCAACAGCAACAGCAATAGCAGGAGGAGGAATGGGAGGAGAAGAAGGA
GAATGGAGGGAGGGAGAAAACGAAGGAGAGGGGTTGCTGGTGACGAGGTT
TAGTGATATGGAGAGTAAAGGGGACAGGTGAGTGTTCATTAATTCTCGTA
TTTTTTATTTTTTTATTTAATTATTTATTTATTCATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTGATTGC
TTTTTCATTTCTAATCCGTTTAGTTATTCGTTTGTCAGGTGCACTGCACG
ATCTCTTAAAATGTGCTTATCACTGCACAGATGACGCCGTTGTAGGGGTC
CGAATCCCTTCTCAACACTCCCTCCCTCCCTCCCTCCCTCGCTTTTATCA
AGCCACATGCCCCCACTCCCTCCCTCCTTCTCTCTCTTTCCCTCCCTCCT
TCGTCCTGTCCGCCTCCTCAAGCGGGTCACTTGGAAACTTAAATCTTATC
CCATCGCCCATACACTTCTCAATACTGCCTCTTTCATGATCCCTCCCTCC
CTCTCTCCTTCAGTGTCTGCGCCCGTCCCTGGCACCTCATGGACTACGAC
AGCGCGCTAATCCGCATGGCCAGACATAATGTCATCACCGCCATAGCCAA
CCTCATACAAGGAGGAACCATAGACCTCATCAAGGCCCACGATTTCATGT
ACGTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTATCCCGCCTTTCTTT
CTTCTTGGTCCAAATCCCTTTCCCCCCCCTCCACTTCGTCCCCTCCTCCC
CTCCCTCCCTCCCTCCCTCCCTTCCCAGGTATATGGTCCGATGCTTCTCC
AAAAGCACCGGACGAGACGTCAGCTACGGCCTGGGCGAGGTACGTTCCTC
CCTCCCTTCCTCCCTCCCTCTCTCTATTCCAATATTGCTGTTGTAGCTAC
GGATGCGGCTATTTTTACGACTGCGACCGCTTCTCACCCTTCCTTCCGTC
CTGCCTCCCGCCCTCGCGCCCTTTTCCACACCTTCCCGATCAGGCCCTGG
AGGCCATGCTCTCCTCCTACCCACCCCAGCAGCAGCAGCAGCAGCAGACG
CTGCCGGGCTACTCCCTTGTCCATCATACCACCGCAGCTGCTCTCGCCGC
CCGCCTGGCCAAAGACGAGACTGCGTGCTACCTCATCAGTAGAGGCGGCT
TCGGGAAGCATGTGGTTGAGTGAGTCTTTCCTCCCTCCTTCCCACCCCTC
CTCCTCCTCGTCTTACTCTGTGTGTGCATGGATTTACGTGCAATCCCCTC
CTCCCTCTTTCCCTCCCACCATTCCACCATTCCACCATTCCTTTCCTCCT
CATGTAGGTACGATAGCCAGCATAATTTGAACCAATTCAAAATTCAAAAT
TCAAAATACAAAATTCAACTCCCAGGTGCAATCCGCGCATGAGCGCTCTC
TTCCTCCCTGCCGGTGAGATCCAAGGGCTGGTGCGACAGACAGGCTTGGG
CACCTCTGCGTTCTGGGGCAGGTTTGTGTGTGCCGAGTCCCTCTTGCAGT
TGCACTCGGCTGTTGCCACAGTCACCCTCGCCCAGGGGAGGAAGTCACAG
GTCGACGTGGTGCTGCAGGTAGGGTAGTAGTTCAGCAGGTCCCTCTCCCT
CCATCCCTCCCTCCCTTACTTCCTCCCTTACTTCCTCTGAGCAAGAACAT
GCATGCCGAAACTTGAATTCCCTTTCACCTTCCACCCTTCCCTCCCCCCC
GCCCTCCTTCCCGCCCTCCCTCCCTTCCTCCCTCAGTGCAAAACCCTCCA
AGGCACCAAAGTACGATGCGTCGCCAGCGTCGGTTTCCATTGCGACTCAG
ATGTACGTCCTTGCCTCCCTCTCTCCCGTTCTCTCGCCCTCCCTTCCTCC
TTTCTTCCCTTCCATACCTTTTGCATGGGTCAGCCTCCTTGCCCCCCACA
CAGCCCAATCCTTCCCTCCCTCCCTCCCTCCCAACCTTCCTCCCTCCCTC
CTTCTCTAGGGCAAGGCGATTCTCATCCTCCGCCTTTGGCCGCTTGTCGC
GAGGAGCTTTAGGGTCGACCGGGCCCCTCCCTCCCTCCCTCCCTCGCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTAGTCTGCAGCGGGCGGGGCAGAGT
GCGAGTGGAAGCAGCACCAGCAGCGGTGGC back to topCoding sequence (CDS) from alignment at scaffold_50:116905..119284- >mRNA_10245 ID=mRNA_10245|Name=jgi.p|Nanoce1779_2|610548|organism=Nannochloropsis oceanica|type=CDS|length=5958bp|location=Sequence derived from alignment at scaffold_50:116905..119284- (Nannochloropsis oceanica)
TGCAAAACCCTCCAAGGCACCAAAGTACGATGCGTCGCCAGCGTCGGTTT
CCATTGCGACTCAGATGTACGTCCTTGCCTCCCTCTCTCCCGTTCTCTCG
CCCTCCCTTCCTCCTTTCTTCCCTTCCATACCTTTTGCATGGGTCAGCCT
CCTTGCCCCCCACACAGCCCAATCCTTCCCTCCCTCCCTCCCTCCCAACC
TTCCTCCCTCCCTCCTTCTCTAGGGCAAGGCGATTCTCATCCTCCGCCTT
TGGCCGCTTGTCGCGAGGAGCTTTAGGTGCAATCCGCGCATGAGCGCTCT
CTTCCTCCCTGCCGGTGAGATCCAAGGGCTGGTGCGACAGACAGGCTTGG
GCACCTCTGCGTTCTGGGGCAGGTTTGTGTGTGCCGAGTCCCTCTTGCAG
TTGCACTCGGCTGTTGCCACAGTCACCCTCGCCCAGGGGAGGAAGTCACA
GGTCGACGTGGTGCTGCAGGCCCTGGAGGCCATGCTCTCCTCCTACCCAC
CCCAGCAGCAGCAGCAGCAGCAGACGCTGCCGGGCTACTCCCTTGTCCAT
CATACCACCGCAGCTGCTCTCGCCGCCCGCCTGGCCAAAGACGAGACTGC
GTGCTACCTCATCAGTAGAGGCGGCTTCGGGAAGCATGTGGTTGAGTATA
TGGTCCGATGCTTCTCCAAAAGCACCGGACGAGACGTCAGCTACGGCCTG
GGCGAGTGTCTGCGCCCGTCCCTGGCACCTCATGGACTACGACAGCGCGC
TAATCCGCATGGCCAGACATAATGTCATCACCGCCATAGCCAACCTCATA
CAAGGAGGAACCATAGACCTCATCAAGGCCCACGATTTCATATGCCTGCA
GTAACAGCAATAGCGGCAGCAACAGCAACAGCAATAGCAGGAGGAGGAAT
GGGAGGAGAAGAAGGAGAATGGAGGGAGGGAGAAAACGAAGGAGAGGGGT
TGCTGGTGACGAGGTTTAGTGATATGGAGAGTAAAGGGGACAGTGCAAAA
CCCTCCAAGGCACCAAAGTACGATGCGTCGCCAGCGTCGGTTTCCATTGC
GACTCAGATGTACGTCCTTGCCTCCCTCTCTCCCGTTCTCTCGCCCTCCC
TTCCTCCTTTCTTCCCTTCCATACCTTTTGCATGGGTCAGCCTCCTTGCC
CCCCACACAGCCCAATCCTTCCCTCCCTCCCTCCCTCCCAACCTTCCTCC
CTCCCTCCTTCTCTAGGGCAAGGCGATTCTCATCCTCCGCCTTTGGCCGC
TTGTCGCGAGGAGCTTTAGGTGCAATCCGCGCATGAGCGCTCTCTTCCTC
CCTGCCGGTGAGATCCAAGGGCTGGTGCGACAGACAGGCTTGGGCACCTC
TGCGTTCTGGGGCAGGTTTGTGTGTGCCGAGTCCCTCTTGCAGTTGCACT
CGGCTGTTGCCACAGTCACCCTCGCCCAGGGGAGGAAGTCACAGGTCGAC
GTGGTGCTGCAGGCCCTGGAGGCCATGCTCTCCTCCTACCCACCCCAGCA
GCAGCAGCAGCAGCAGACGCTGCCGGGCTACTCCCTTGTCCATCATACCA
CCGCAGCTGCTCTCGCCGCCCGCCTGGCCAAAGACGAGACTGCGTGCTAC
CTCATCAGTAGAGGCGGCTTCGGGAAGCATGTGGTTGAGTATATGGTCCG
ATGCTTCTCCAAAAGCACCGGACGAGACGTCAGCTACGGCCTGGGCGAGT
GTCTGCGCCCGTCCCTGGCACCTCATGGACTACGACAGCGCGCTAATCCG
CATGGCCAGACATAATGTCATCACCGCCATAGCCAACCTCATACAAGGAG
GAACCATAGACCTCATCAAGGCCCACGATTTCATATGCCTGCAGTAACAG
CAATAGCGGCAGCAACAGCAACAGCAATAGCAGGAGGAGGAATGGGAGGA
GAAGAAGGAGAATGGAGGGAGGGAGAAAACGAAGGAGAGGGGTTGCTGGT
GACGAGGTTTAGTGATATGGAGAGTAAAGGGGACAGTGCAAAACCCTCCA
AGGCACCAAAGTACGATGCGTCGCCAGCGTCGGTTTCCATTGCGACTCAG
ATGTACGTCCTTGCCTCCCTCTCTCCCGTTCTCTCGCCCTCCCTTCCTCC
TTTCTTCCCTTCCATACCTTTTGCATGGGTCAGCCTCCTTGCCCCCCACA
CAGCCCAATCCTTCCCTCCCTCCCTCCCTCCCAACCTTCCTCCCTCCCTC
CTTCTCTAGGGCAAGGCGATTCTCATCCTCCGCCTTTGGCCGCTTGTCGC
GAGGAGCTTTAGGTGCAATCCGCGCATGAGCGCTCTCTTCCTCCCTGCCG
GTGAGATCCAAGGGCTGGTGCGACAGACAGGCTTGGGCACCTCTGCGTTC
TGGGGCAGGTTTGTGTGTGCCGAGTCCCTCTTGCAGTTGCACTCGGCTGT
TGCCACAGTCACCCTCGCCCAGGGGAGGAAGTCACAGGTCGACGTGGTGC
TGCAGGCCCTGGAGGCCATGCTCTCCTCCTACCCACCCCAGCAGCAGCAG
CAGCAGCAGACGCTGCCGGGCTACTCCCTTGTCCATCATACCACCGCAGC
TGCTCTCGCCGCCCGCCTGGCCAAAGACGAGACTGCGTGCTACCTCATCA
GTAGAGGCGGCTTCGGGAAGCATGTGGTTGAGTATATGGTCCGATGCTTC
TCCAAAAGCACCGGACGAGACGTCAGCTACGGCCTGGGCGAGTGTCTGCG
CCCGTCCCTGGCACCTCATGGACTACGACAGCGCGCTAATCCGCATGGCC
AGACATAATGTCATCACCGCCATAGCCAACCTCATACAAGGAGGAACCAT
AGACCTCATCAAGGCCCACGATTTCATATGCCTGCAGTAACAGCAATAGC
GGCAGCAACAGCAACAGCAATAGCAGGAGGAGGAATGGGAGGAGAAGAAG
GAGAATGGAGGGAGGGAGAAAACGAAGGAGAGGGGTTGCTGGTGACGAGG
TTTAGTGATATGGAGAGTAAAGGGGACAGTGCAAAACCCTCCAAGGCACC
AAAGTACGATGCGTCGCCAGCGTCGGTTTCCATTGCGACTCAGATGTACG
TCCTTGCCTCCCTCTCTCCCGTTCTCTCGCCCTCCCTTCCTCCTTTCTTC
CCTTCCATACCTTTTGCATGGGTCAGCCTCCTTGCCCCCCACACAGCCCA
ATCCTTCCCTCCCTCCCTCCCTCCCAACCTTCCTCCCTCCCTCCTTCTCT
AGGGCAAGGCGATTCTCATCCTCCGCCTTTGGCCGCTTGTCGCGAGGAGC
TTTAGGTGCAATCCGCGCATGAGCGCTCTCTTCCTCCCTGCCGGTGAGAT
CCAAGGGCTGGTGCGACAGACAGGCTTGGGCACCTCTGCGTTCTGGGGCA
GGTTTGTGTGTGCCGAGTCCCTCTTGCAGTTGCACTCGGCTGTTGCCACA
GTCACCCTCGCCCAGGGGAGGAAGTCACAGGTCGACGTGGTGCTGCAGGC
CCTGGAGGCCATGCTCTCCTCCTACCCACCCCAGCAGCAGCAGCAGCAGC
AGACGCTGCCGGGCTACTCCCTTGTCCATCATACCACCGCAGCTGCTCTC
GCCGCCCGCCTGGCCAAAGACGAGACTGCGTGCTACCTCATCAGTAGAGG
CGGCTTCGGGAAGCATGTGGTTGAGTATATGGTCCGATGCTTCTCCAAAA
GCACCGGACGAGACGTCAGCTACGGCCTGGGCGAGTGTCTGCGCCCGTCC
CTGGCACCTCATGGACTACGACAGCGCGCTAATCCGCATGGCCAGACATA
ATGTCATCACCGCCATAGCCAACCTCATACAAGGAGGAACCATAGACCTC
ATCAAGGCCCACGATTTCATATGCCTGCAGTAACAGCAATAGCGGCAGCA
ACAGCAACAGCAATAGCAGGAGGAGGAATGGGAGGAGAAGAAGGAGAATG
GAGGGAGGGAGAAAACGAAGGAGAGGGGTTGCTGGTGACGAGGTTTAGTG
ATATGGAGAGTAAAGGGGACAGTGCAAAACCCTCCAAGGCACCAAAGTAC
GATGCGTCGCCAGCGTCGGTTTCCATTGCGACTCAGATGTACGTCCTTGC
CTCCCTCTCTCCCGTTCTCTCGCCCTCCCTTCCTCCTTTCTTCCCTTCCA
TACCTTTTGCATGGGTCAGCCTCCTTGCCCCCCACACAGCCCAATCCTTC
CCTCCCTCCCTCCCTCCCAACCTTCCTCCCTCCCTCCTTCTCTAGGGCAA
GGCGATTCTCATCCTCCGCCTTTGGCCGCTTGTCGCGAGGAGCTTTAGGT
GCAATCCGCGCATGAGCGCTCTCTTCCTCCCTGCCGGTGAGATCCAAGGG
CTGGTGCGACAGACAGGCTTGGGCACCTCTGCGTTCTGGGGCAGGTTTGT
GTGTGCCGAGTCCCTCTTGCAGTTGCACTCGGCTGTTGCCACAGTCACCC
TCGCCCAGGGGAGGAAGTCACAGGTCGACGTGGTGCTGCAGGCCCTGGAG
GCCATGCTCTCCTCCTACCCACCCCAGCAGCAGCAGCAGCAGCAGACGCT
GCCGGGCTACTCCCTTGTCCATCATACCACCGCAGCTGCTCTCGCCGCCC
GCCTGGCCAAAGACGAGACTGCGTGCTACCTCATCAGTAGAGGCGGCTTC
GGGAAGCATGTGGTTGAGTATATGGTCCGATGCTTCTCCAAAAGCACCGG
ACGAGACGTCAGCTACGGCCTGGGCGAGTGTCTGCGCCCGTCCCTGGCAC
CTCATGGACTACGACAGCGCGCTAATCCGCATGGCCAGACATAATGTCAT
CACCGCCATAGCCAACCTCATACAAGGAGGAACCATAGACCTCATCAAGG
CCCACGATTTCATATGCCTGCAGTAACAGCAATAGCGGCAGCAACAGCAA
CAGCAATAGCAGGAGGAGGAATGGGAGGAGAAGAAGGAGAATGGAGGGAG
GGAGAAAACGAAGGAGAGGGGTTGCTGGTGACGAGGTTTAGTGATATGGA
GAGTAAAGGGGACAGTGCAAAACCCTCCAAGGCACCAAAGTACGATGCGT
CGCCAGCGTCGGTTTCCATTGCGACTCAGATGTACGTCCTTGCCTCCCTC
TCTCCCGTTCTCTCGCCCTCCCTTCCTCCTTTCTTCCCTTCCATACCTTT
TGCATGGGTCAGCCTCCTTGCCCCCCACACAGCCCAATCCTTCCCTCCCT
CCCTCCCTCCCAACCTTCCTCCCTCCCTCCTTCTCTAGGGCAAGGCGATT
CTCATCCTCCGCCTTTGGCCGCTTGTCGCGAGGAGCTTTAGGTGCAATCC
GCGCATGAGCGCTCTCTTCCTCCCTGCCGGTGAGATCCAAGGGCTGGTGC
GACAGACAGGCTTGGGCACCTCTGCGTTCTGGGGCAGGTTTGTGTGTGCC
GAGTCCCTCTTGCAGTTGCACTCGGCTGTTGCCACAGTCACCCTCGCCCA
GGGGAGGAAGTCACAGGTCGACGTGGTGCTGCAGGCCCTGGAGGCCATGC
TCTCCTCCTACCCACCCCAGCAGCAGCAGCAGCAGCAGACGCTGCCGGGC
TACTCCCTTGTCCATCATACCACCGCAGCTGCTCTCGCCGCCCGCCTGGC
CAAAGACGAGACTGCGTGCTACCTCATCAGTAGAGGCGGCTTCGGGAAGC
ATGTGGTTGAGTATATGGTCCGATGCTTCTCCAAAAGCACCGGACGAGAC
GTCAGCTACGGCCTGGGCGAGTGTCTGCGCCCGTCCCTGGCACCTCATGG
ACTACGACAGCGCGCTAATCCGCATGGCCAGACATAATGTCATCACCGCC
ATAGCCAACCTCATACAAGGAGGAACCATAGACCTCATCAAGGCCCACGA
TTTCATATGCCTGCAGTAACAGCAATAGCGGCAGCAACAGCAACAGCAAT
AGCAGGAGGAGGAATGGGAGGAGAAGAAGGAGAATGGAGGGAGGGAGAAA
ACGAAGGAGAGGGGTTGCTGGTGACGAGGTTTAGTGATATGGAGAGTAAA
GGGGACAG back to top
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