jgi.p|Nanoce1779_2|343096, mRNA_10244 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|343096
Unique Name	mRNA_10244
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1038
Alignment location	scaffold_50:114625..115781 +

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Properties


Property Name	Value
TranscriptId	343182
Track	FilteredModels2
ProteinId	343096

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:114625..115781 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|343096	gene_10244	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|343096	mRNA_10244-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10244	CDS_10244	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:114625..115781+
coding sequence from alignment at scaffold_50:114625..115781+

mRNA sequence

>mRNA_10244 ID=mRNA_10244|Name=jgi.p|Nanoce1779_2|343096|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
CAAGATGTAATTATGCAAATAAATACAAATAAGGGATGTGATATTTATAT
ATATTTGGGATGCATGTCAAGTATTCCGAGGGAGGGCGTTTCTCTCCCGC
ACATGAGGGTGGGTCGGTGAGTTGATTGGACGGAAGCCCGTAATAAATTA
AATTAAATATGGATGAGATGCACGTCTGAAGACGGATCTTCAGACTGGAT
ACGACAAATATTATCACAGCATTTCCTTGCTTGCGTACGACAAACATCAT
CACAACATTTCACTGTTCACAGCACCGGGTGCTTCTTTCTTCTCCTTTTC
CTCCTTTCCCCTTTTACTTTCTCTTCTCATCCTCTTCCTCCTTCTTCTTC
CTCCTCTCCTTCTCGATCTTCAAACTCTGCCTTTGAGAGCTGTGTTGCTG
CTTATTTTCCTTTGACTTCCAATTCCAATTCTAATACTTTCTCTTTTCTT
ATTGTAATTCAAATTCGAATTCTCATATCACATTTCTTCTTTTTGTCCCT
CACATTGTTATTTGAACATGAAATTATTCTTTTTCGTGACATTTCTTCTC
CATCTCACCCACTGCTGCTACCTTATGCTGTTCTTGATTTCTACATTTAC
ATTCCCTGCTTCCCCCGCTGTAATCATCTTCTTGTAACGGCCAGTATAAA
CGGCCGCCAGCCGCCAGGCGACTCCCACATCCCGATACCAAGCGGTCGAG
CCAGGAGTGTAGGAGGGGTAGAAGGTATCATGCCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCGTCTTTTTTC
ACTCTGGGACTGCTTCTCTCCTCTTGTTTCCAGGTTTGGTCACCTTCCTT
CCCTCCCTCGTCCTCGCCTGCTGCAGCATTCCCGCCAGGACCAGCGCGGC
GATTGAATTGGCATCACCGCTCAGCATCAGGCTCTCCTCGTTCCGATCCT
CCCTCCTTCCCTCCATTCCTGCCTCCCTCCCTCCTCCCTGCGAGGACACG
ATGGACTCGGAAAGGGACTGGGGGAAGGGAATGGAAGG

protein sequence of jgi.p|Nanoce1779_2|343096

>mRNA_10244-protein ID=mRNA_10244-protein|Name=jgi.p|Nanoce1779_2|343096|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MRCTSEDGSSDWIRQILSQHFLACVRQTSSQHFTVHSTGCFFLLLFLLSP
FTFSSHPLPPSSSSSPSRSSNSAFESCVAAYFPLTSNSNSNTFSFLIVIQ
IRILISHFFFLSLTLLFEHEIILFRDISSPSHPLLLPYAVLDFYIYIPCF
PRCNHLLVTASINGRQPPGDSHIPIPSGRARSVGGVEGIMPLLLLLLLLL
LLLLLLLLPRLFSLWDCFSPLVSRFGHLPSLPRPRLLQHSRQDQRGD*

mRNA from alignment at scaffold_50:114625..115781+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10244 ID=mRNA_10244|Name=jgi.p|Nanoce1779_2|343096|organism=Nannochloropsis oceanica|type=mRNA|length=1157bp|location=Sequence derived from alignment at scaffold_50:114625..115781+ (Nannochloropsis oceanica)
CAAGATGTAATTATGCAAATAAATACAAATAAGGGATGTGATATTTATAT
ATATTTGGGATGCATGTCAAGTATTCCGAGGGAGGGCGTTTCTCTCCCGC
ACATGAGGGTGGGTCGGTGAGTTGATTGGACGGAAGCCCGTAATAAATTA
AATTAAATATGGATGAGATGCACGTCTGAAGACGGATCTTCAGACTGGAT
ACGACAAATATTATCACAGCATTTCCTTGCTTGCGTACGACAAACATCAT
CACAACATTTCACTGTTCACAGCACCGGGTGCTTCTTTCTTCTCCTTTTC
CTCCTTTCCCCTTTTACTTTCTCTTCTCATCCTCTTCCTCCTTCTTCTTC
CTCCTCTCCTTCTCGATCTTCAAACTCTGCCTTTGAGAGCTGTGTTGCTG
CTTATTTTCCTTTGACTTCCAATTCCAATTCTAATACTTTCTCTTTTCTT
ATTGTAATTCAAATTCGAATTCTCATATCACATTTCTTCTTTTTGTCCCT
CACATTGTTATTTGAACATGAAATTATTCTTTTTCGTGACATTTCTTCTC
CATCTCACCCACTGCTGCTACCTTATGCTGTTCTTGATTTCTACATTTAC
ATTCCCTGCTTCCCCCGCTGTAATCATCTTCTTGTAACGGCCAGTATAAA
CGGCCGCCAGCCGCCAGGCGACTCCCACATCCCGATACCAAGCGGTCGAG
CCAGGAGTGTAGGAGGGGTAGAAGGTATCATGCCCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCCTCGTCTTTTTTC
ACTCTGGGACTGCTTCTCTCCTCTTGTTTCCAGGTTTGGTCACCTTCCTT
CCCTCCCTCTCTCCCTCTCTCCCCCCTTCCCTCATTCGAGAATGCTCATT
CCTTGTGTGCCTGCCAGCTCGTGAGGTCGACCTGCCGCTGCCCCTCCCTC
CATCCCTCCCTCCCTCCTTTCCTCCCTCGTCCTCGCCTGCTGCAGCATTC
CCGCCAGGACCAGCGCGGCGATTGAATTGGCATCACCGCTCAGCATCAGG
CTCTCCTCGTTCCGATCCTCCCTCCTTCCCTCCATTCCTGCCTCCCTCCC
TCCTCCCTGCGAGGACACGATGGACTCGGAAAGGGACTGGGGGAAGGGAA
TGGAAGG

Coding sequence (CDS) from alignment at scaffold_50:114625..115781+

>mRNA_10244 ID=mRNA_10244|Name=jgi.p|Nanoce1779_2|343096|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_50:114625..115781+ (Nannochloropsis oceanica)
ATGAGATGCACGTCTGAAGACGGATCTTCAGACTGGATACGACAAATATT
ATCACAGCATTTCCTTGCTTGCGTACGACAAACATCATCACAACATTTCA
CTGTTCACAGCACCGGGTGCTTCTTTCTTCTCCTTTTCCTCCTTTCCCCT
TTTACTTTCTCTTCTCATCCTCTTCCTCCTTCTTCTTCCTCCTCTCCTTC
TCGATCTTCAAACTCTGCCTTTGAGAGCTGTGTTGCTGCTTATTTTCCTT
TGACTTCCAATTCCAATTCTAATACTTTCTCTTTTCTTATTGTAATTCAA
ATTCGAATTCTCATATCACATTTCTTCTTTTTGTCCCTCACATTGTTATT
TGAACATGAAATTATTCTTTTTCGTGACATTTCTTCTCCATCTCACCCAC
TGCTGCTACCTTATGCTGTTCTTGATTTCTACATTTACATTCCCTGCTTC
CCCCGCTGTAATCATCTTCTTGTAACGGCCAGTATAAACGGCCGCCAGCC
GCCAGGCGACTCCCACATCCCGATACCAAGCGGTCGAGCCAGGAGTGTAG
GAGGGGTAGAAGGTATCATGCCCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCCTCCCTCGTCTTTTTTCACTCTGGGACTG
CTTCTCTCCTCTTGTTTCCAGGTTTGGTCACCTTCCTTCCCTCCCTCGTC
CTCGCCTGCTGCAGCATTCCCGCCAGGACCAGCGCGGCGATTGAATGAGA
TGCACGTCTGAAGACGGATCTTCAGACTGGATACGACAAATATTATCACA
GCATTTCCTTGCTTGCGTACGACAAACATCATCACAACATTTCACTGTTC
ACAGCACCGGGTGCTTCTTTCTTCTCCTTTTCCTCCTTTCCCCTTTTACT
TTCTCTTCTCATCCTCTTCCTCCTTCTTCTTCCTCCTCTCCTTCTCGATC
TTCAAACTCTGCCTTTGAGAGCTGTGTTGCTGCTTATTTTCCTTTGACTT
CCAATTCCAATTCTAATACTTTCTCTTTTCTTATTGTAATTCAAATTCGA
ATTCTCATATCACATTTCTTCTTTTTGTCCCTCACATTGTTATTTGAACA
TGAAATTATTCTTTTTCGTGACATTTCTTCTCCATCTCACCCACTGCTGC
TACCTTATGCTGTTCTTGATTTCTACATTTACATTCCCTGCTTCCCCCGC
TGTAATCATCTTCTTGTAACGGCCAGTATAAACGGCCGCCAGCCGCCAGG
CGACTCCCACATCCCGATACCAAGCGGTCGAGCCAGGAGTGTAGGAGGGG
TAGAAGGTATCATGCCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCCTCGTCTTTTTTCACTCTGGGACTGCTTCTC
TCCTCTTGTTTCCAGGTTTGGTCACCTTCCTTCCCTCCCTCGTCCTCGCC
TGCTGCAGCATTCCCGCCAGGACCAGCGCGGCGATTGA

Synonyms

Publications