jgi.p|Nanoce1779_2|610542, mRNA_10243 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610542
Unique Name	mRNA_10243
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	808
Alignment location	scaffold_50:112157..113802 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610628
Track	FilteredModels2
ProteinId	610542

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:112157..113802 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610542	gene_10243	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610542	mRNA_10243-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10243	CDS_10243	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:112157..113802+
coding sequence from alignment at scaffold_50:112157..113802+

mRNA sequence

>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Nanoce1779_2|610542|organism=Nannochloropsis oceanica|type=mRNA|length=808bp
GGCGGGGCCGTGGCCAAGGCGGCAGAACGCGCCACCTCCCTAGCCCAGGA
AGCCATGGAGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTG
AGATGGAGGGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGA
GGCTTCAGTAAGGTCTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCT
GGCCCTAAAGCAAATCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCA
CCAACGAGCTCAAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCC
CTCCTCGCTTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCG
GGTATTTTATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATG
CCATTGCGCGGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTC
CGCCTTTTTTTCGGCACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGA
TATCGCTCACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAG
GGCAGCCCCTCCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAA
ACCGTTACGGATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGC
CCGATGCTCCCCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGT
AGAGAGGGAGGGAGGGAAAGAAAAAGGAAGGGAGGGAGAGAGGGAGGGAT
GGAAGGGAGAGAAGGCACTCGCCGGCTTACCGTCCTCCCGAGCTGACACA
GATACGCC

protein sequence of jgi.p|Nanoce1779_2|610542

>mRNA_10243-protein ID=mRNA_10243-protein|Name=jgi.p|Nanoce1779_2|610542|organism=Nannochloropsis oceanica|type=polypeptide|length=216bp
MEGGREGGWGAGAVVEMEGGRRVRMGRQVAEGGFSKVFLAKDEATGERLA
LKQILTFHDEAARDATNELKVLRAISHPSLLPLLASSSSLTPKGGQSCRV
FYFLFPYCSRGSLWDAIARAKTEWPFTERVILRLFFGTCQGLLALHERDI
AHWDIKPHNVLLSDQGQPLLMDFGSCCSPATQTVTDRRAGLLLEETAAAR
CSPAYRPPELTQVGR*

mRNA from alignment at scaffold_50:112157..113802+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Nanoce1779_2|610542|organism=Nannochloropsis oceanica|type=mRNA|length=1646bp|location=Sequence derived from alignment at scaffold_50:112157..113802+ (Nannochloropsis oceanica)
GGCGGGGCCGTGGCCAAGGCGGCAGAACGCGCCACCTCCCTAGCCCAGGA
AGCCATGGAGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTG
AGATGGAGGGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGA
GGCTTCAGTAAGGTGAGGAGGGAGGGCGGAACGGCGAGCGGGAGGGCGGG
AGGGAGGGAAGAAGGCACGGATACATAGATTTATATCCCCCCACTCTCAA
ATGCAGGAAACATCTGACCTTCCTCCCTCCCTCCAGGTCTTCCTGGCCAA
AGATGAGGCCACGGGCGAGAGGCTGGCCCTAAAGCAAATCCTAACCTTCC
ACGACGAGGCTGCAAGAGACGCCACCAACGAGCTCAAGGTATGTCCTCCC
TCCCTCCCTCCATCCATCCCTCCCTCATTCCTTCCCTCCCTCTTTTCGTT
CTCCGAGCACTCTCTTCACTTCCTCTCCCTCTTTCTCTCCCTCTCCCTCC
CTCCCTCCCTCCCTCAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTC
CCCCTCCTCGCTTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTG
CCGGGTATTTTATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGG
ATGCCATTGCGCGGTAAGCGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCTGTACTCGTCGAGTGACGCAATCTTGCCGCCCCTCCCTCTATCCCT
CCCTCTATCCCTCCCTCTATCCCTCCCTCTATCCCTCCCTCTATCCCTCA
GGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTTTT
TTCGGCACCTGCCAGGGTACGTCCCCCTCCCTCCCTCCCTCCCTTCCCCC
CTCCCTCTCCTTTCCGCCTCTGTGGAAGATCTGGCATGTTACTCACAGTG
CCGTCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCACCACTCATTCACACT
TCTCTACCTCATCCACCCCCCTTTCCTTCCTCCCTCCCTCCATCCCTCCA
TCCCTCCCTTCCTCCCTGCCAGGCCTCCTTGCCCTCCACGAGAGGGATAT
CGCTCACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGC
AGGTAGGCCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCCTTTCCACCTCAGTGGAAGATCTGGCATGTGACCCAAATGCCGTCC
CCCCTCCCTCCCTCCCGCCCTCCTTCCCTATCACATCTTCACCTCCTCAA
ACCCGTCATTCCGACACCCGTATTACCTTCCCGCTCTTCTTCTCCCCCCC
CCCAAACCCATGCCCTCCCTCCCTTCCTCCCTCCCTCCTTCAGCCCCTCC
TCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTACGGAT
CGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCTCCCC
GGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGAGAGGGAGGG
AGGGAAAGAAAAAGGAAGGGAGGGAGAGAGGGAGGGATGGAAGGGAGAGA
AGGCACTCGCCGGCTTACCGTCCTCCCGAGCTGACACAGATACGCC

Coding sequence (CDS) from alignment at scaffold_50:112157..113802+

>mRNA_10243 ID=mRNA_10243|Name=jgi.p|Nanoce1779_2|610542|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_50:112157..113802+ (Nannochloropsis oceanica)
ATGGAGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGAT
GGAGGGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCT
TCAGTAAGGTCTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCC
CTAAAGCAAATCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCACCAA
CGAGCTCAAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCC
TCGCTTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTA
TTTTATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCAT
TGCGCGGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCC
TTTTTTTCGGCACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATC
GCTCACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCA
GCCCCTCCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCG
TTACGGATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGA
TGCTCCCCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGAT
GGAGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGATGG
AGGGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCTTC
AGTAAGGTCTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCCCT
AAAGCAAATCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCACCAACG
AGCTCAAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCCTC
GCTTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTATT
TTATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCATTG
CGCGGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTT
TTTTTCGGCACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATCGC
TCACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCAGC
CCCTCCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTT
ACGGATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATG
CTCCCCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGATGG
AGGGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGATGGAG
GGAGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCTTCAG
TAAGGTCTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCCCTAA
AGCAAATCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCACCAACGAG
CTCAAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCCTCGC
TTCCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTATTTT
ATTTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCATTGCG
CGGGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTTT
TTTCGGCACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATCGCTC
ACTGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCAGCCC
CTCCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTAC
GGATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCT
CCCCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGATGGAG
GGAGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGATGGAGGG
AGGGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCTTCAGTA
AGGTCTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCCCTAAAG
CAAATCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCACCAACGAGCT
CAAGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCCTCGCTT
CCTCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTATTTTAT
TTTCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCATTGCGCG
GGCTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTTTTT
TCGGCACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATCGCTCAC
TGGGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCAGCCCCT
CCTCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTACGG
ATCGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCTCC
CCGGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGATGGAGGG
AGGGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGATGGAGGGAG
GGAGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCTTCAGTAAG
GTCTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCCCTAAAGCA
AATCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCACCAACGAGCTCA
AGGTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCCTCGCTTCC
TCCTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTATTTTATTT
TCTCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCATTGCGCGGG
CTAAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTTTTTTC
GGCACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATCGCTCACTG
GGACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCAGCCCCTCC
TCATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTACGGAT
CGACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCTCCCC
GGCCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAGATGGAGGGAG
GGAGGGAGGGAGGGTGGGGGGCAGGAGCAGTGGTTGAGATGGAGGGAGGG
AGGAGAGTGAGGATGGGTAGACAAGTGGCAGAGGGAGGCTTCAGTAAGGT
CTTCCTGGCCAAAGATGAGGCCACGGGCGAGAGGCTGGCCCTAAAGCAAA
TCCTAACCTTCCACGACGAGGCTGCAAGAGACGCCACCAACGAGCTCAAG
GTCTTGCGCGCCATCTCCCACCCCTCCCTCCTCCCCCTCCTCGCTTCCTC
CTCATCTCTCACCCCAAAAGGAGGCCAATCCTGCCGGGTATTTTATTTTC
TCTTCCCCTACTGCAGCCGAGGCAGTCTCTGGGATGCCATTGCGCGGGCT
AAGACTGAGTGGCCCTTCACCGAGCGCGTCATCCTCCGCCTTTTTTTCGG
CACCTGCCAGGGCCTCCTTGCCCTCCACGAGAGGGATATCGCTCACTGGG
ACATTAAGCCTCACAACGTCCTCCTCTCCGACCAAGGGCAGCCCCTCCTC
ATGGACTTCGGATCTTGCTGCTCCCCTGCCACTCAAACCGTTACGGATCG
ACGCGCAGGACTCCTTCTGGAAGAAACGGCCGCGGCCCGATGCTCCCCGG
CCTATCGTCCTCCCGAGCTGACACAGGTAGGGAGGTAG

Synonyms

Publications