jgi.p|Nanoce1779_2|674681, mRNA_10242 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674681
Unique NamemRNA_10242
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length633
Alignment locationscaffold_50:110944..112006 +

Link to JBrowse

Properties
Property NameValue
TranscriptId674767
TrackFilteredModels2
ProteinId674681
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:110944..112006 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674681gene_10242Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674681mRNA_10242-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10242CDS_10242Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10242 ID=mRNA_10242|Name=jgi.p|Nanoce1779_2|674681|organism=Nannochloropsis oceanica|type=mRNA|length=633bp
ATGCACGTATTACTAAGCGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCATCAGTGGCATGTGGAAGTGAATGGCGTGCAC
AGAGTCTTGCGCCTGAGGAAGTGCGGCAAATAATCATGCCTCTCCCCCTC
CGCGTCCTTTACACCATCCAAGGCTCCTCGTCGTTCTCCGACACTGCCGA
CGACGACGATGATGCCTCTTTCGCCTATCCCTGCTGCTTTGAGATGGACA
TGCCTTCTTCGGGATTGTTGAAGGCCCATGACGTCTTGGCCGCTTTTCCC
CCGGCGGCGATGGCTGCTGAGGCCTTCGGGGAACCTTTGCGTGGGTGGCA
GCTGGTGGCGCTCTCCGCCGACGGTCGGACACGCGTCGACCTGGCGCATC
CTGCAGCCCTGATTCCTGTGGATGAGCGGGAAAGGACCGTGTGCCTAGAG
GTAATCCCTCTTGCCCGCCCTCCTCTCTATACACGCGAAGCGATACAAAC
TCGCCTCCGGAGCGAAAGGCAGCACCAGCACCAGCAGCAGCACCACCAGC
AGCAGCGAAAGGATCCTTCTCTCTCTCCTCGCCGACAAGCCCATCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
back to top

protein sequence of jgi.p|Nanoce1779_2|674681

>mRNA_10242-protein ID=mRNA_10242-protein|Name=jgi.p|Nanoce1779_2|674681|organism=Nannochloropsis oceanica|type=polypeptide|length=211bp
MHVLLSVVVVAAAAAAAAAAAAASVACGSEWRAQSLAPEEVRQIIMPLPL
RVLYTIQGSSSFSDTADDDDDASFAYPCCFEMDMPSSGLLKAHDVLAAFP
PAAMAAEAFGEPLRGWQLVALSADGRTRVDLAHPAALIPVDERERTVCLE
VIPLARPPLYTREAIQTRLRSERQHQHQQQHHQQQRKDPSLSPRRQAHPS
SSSSSSSSSSS
back to top

mRNA from alignment at scaffold_50:110944..112006+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10242 ID=mRNA_10242|Name=jgi.p|Nanoce1779_2|674681|organism=Nannochloropsis oceanica|type=mRNA|length=1063bp|location=Sequence derived from alignment at scaffold_50:110944..112006+ (Nannochloropsis oceanica)
ATGCACGTATTACTAAGCGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCATCAGTGGCATGTGGAAGTGAATGGCGTGCAC
AGAGTCTTGCGCCTGGTGATGATGCTGTATGCTGCTGCTTCCGAGCAAGC
TTACACCCTTCTTCAAGTCTCGTACGTATCACATGACGGGGACCGTCATC
ACACAGCTCCACCTCCACATACACTCACGTCTCCTGCTGCCTCTGTTTTC
CTGGGCTCGACTGCATCCAACCCACCCCTCTCTCCTATCCCCCCCCCCCC
CCCCACACACAGAGGAAGTGCGGCAAATAATCATGCCTCTCCCCCTCCGC
GTCCTTTACACCATCCAAGGCTCCTCGTCGTTCTCCGACACTGCCGACGA
CGACGATGATGCCTCTTTCGCCTATCCCTGCTGCTTTGAGATGGACATGC
CTTCTTCGGGATTGTTGAAGGCCCATGACGTCTTGGCCGCTTTTCCCCCG
GCGGCGATGGCTGCTGAGGTGAGGGAAGAAAGGAGGGAAGGAGGGGGGGG
CGCTTTCCTCCCCAAGTATCTCTCAGGCATTAAACAGTGGCTTGACCTAC
CCCTCTATCCCTCCCTCCAGGCCTTCGGGGAACCTTTGCGTGGGTGGCAG
CTGGTGGCGCTCTCCGCCGACGGTCGGACACGCGTCGACCTGGCGCATCC
TGCAGCCCTGATTCCTGTGGATGAGCGGGAAAGGACCGTGTGCCTAGAGG
TTGGTATCCTCGGTCTCCTACCTTCCTCCCTCTTTCCCTTTCACCCTCCC
TCCCTCCGTCTATTCATTCACTCTTCCACCCCCCCTACCCCCGTTCCCAC
TTACTCACTTATCCTTCCCCTTCCCTCCAGGTAATCCCTCTTGCCCGCCC
TCCTCTCTATACACGCGAAGCGATACAAACTCGCCTCCGGAGCGAAAGGC
AGCACCAGCACCAGCAGCAGCACCACCAGCAGCAGCGAAAGGATCCTTCT
CTCTCTCCTCGCCGACAAGCCCATCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCC
back to top

Coding sequence (CDS) from alignment at scaffold_50:110944..112006+

>mRNA_10242 ID=mRNA_10242|Name=jgi.p|Nanoce1779_2|674681|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_50:110944..112006+ (Nannochloropsis oceanica)
ATGCACGTATTACTAAGCGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCATCAGTGGCATGTGGAAGTGAATGGCGTGCAC
AGAGTCTTGCGCCTGAGGAAGTGCGGCAAATAATCATGCCTCTCCCCCTC
CGCGTCCTTTACACCATCCAAGGCTCCTCGTCGTTCTCCGACACTGCCGA
CGACGACGATGATGCCTCTTTCGCCTATCCCTGCTGCTTTGAGATGGACA
TGCCTTCTTCGGGATTGTTGAAGGCCCATGACGTCTTGGCCGCTTTTCCC
CCGGCGGCGATGGCTGCTGAGGCCTTCGGGGAACCTTTGCGTGGGTGGCA
GCTGGTGGCGCTCTCCGCCGACGGTCGGACACGCGTCGACCTGGCGCATC
CTGCAGCCCTGATTCCTGTGGATGAGCGGGAAAGGACCGTGTGCCTAGAG
GTAATCCCTCTTGCCCGCCCTCCTCTCTATACACGCGAAGCGATACAAAC
TCGCCTCCGGAGCGAAAGGCAGCACCAGCACCAGCAGCAGCACCACCAGC
AGCAGCGAAAGGATCCTTCTCTCTCTCCTCGCCGACAAGCCCATCCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCATGCACGTATTACTAAG
CGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CATCAGTGGCATGTGGAAGTGAATGGCGTGCACAGAGTCTTGCGCCTGAG
GAAGTGCGGCAAATAATCATGCCTCTCCCCCTCCGCGTCCTTTACACCAT
CCAAGGCTCCTCGTCGTTCTCCGACACTGCCGACGACGACGATGATGCCT
CTTTCGCCTATCCCTGCTGCTTTGAGATGGACATGCCTTCTTCGGGATTG
TTGAAGGCCCATGACGTCTTGGCCGCTTTTCCCCCGGCGGCGATGGCTGC
TGAGGCCTTCGGGGAACCTTTGCGTGGGTGGCAGCTGGTGGCGCTCTCCG
CCGACGGTCGGACACGCGTCGACCTGGCGCATCCTGCAGCCCTGATTCCT
GTGGATGAGCGGGAAAGGACCGTGTGCCTAGAGGTAATCCCTCTTGCCCG
CCCTCCTCTCTATACACGCGAAGCGATACAAACTCGCCTCCGGAGCGAAA
GGCAGCACCAGCACCAGCAGCAGCACCACCAGCAGCAGCGAAAGGATCCT
TCTCTCTCTCCTCGCCGACAAGCCCATCCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCATGCACGTATTACTAAGCGTGGTAGTAGTAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGTGGCATGTGGA
AGTGAATGGCGTGCACAGAGTCTTGCGCCTGAGGAAGTGCGGCAAATAAT
CATGCCTCTCCCCCTCCGCGTCCTTTACACCATCCAAGGCTCCTCGTCGT
TCTCCGACACTGCCGACGACGACGATGATGCCTCTTTCGCCTATCCCTGC
TGCTTTGAGATGGACATGCCTTCTTCGGGATTGTTGAAGGCCCATGACGT
CTTGGCCGCTTTTCCCCCGGCGGCGATGGCTGCTGAGGCCTTCGGGGAAC
CTTTGCGTGGGTGGCAGCTGGTGGCGCTCTCCGCCGACGGTCGGACACGC
GTCGACCTGGCGCATCCTGCAGCCCTGATTCCTGTGGATGAGCGGGAAAG
GACCGTGTGCCTAGAGGTAATCCCTCTTGCCCGCCCTCCTCTCTATACAC
GCGAAGCGATACAAACTCGCCTCCGGAGCGAAAGGCAGCACCAGCACCAG
CAGCAGCACCACCAGCAGCAGCGAAAGGATCCTTCTCTCTCTCCTCGCCG
ACAAGCCCATCCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCA
TGCACGTATTACTAAGCGTGGTAGTAGTAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCATCAGTGGCATGTGGAAGTGAATGGCGTGCACA
GAGTCTTGCGCCTGAGGAAGTGCGGCAAATAATCATGCCTCTCCCCCTCC
GCGTCCTTTACACCATCCAAGGCTCCTCGTCGTTCTCCGACACTGCCGAC
GACGACGATGATGCCTCTTTCGCCTATCCCTGCTGCTTTGAGATGGACAT
GCCTTCTTCGGGATTGTTGAAGGCCCATGACGTCTTGGCCGCTTTTCCCC
CGGCGGCGATGGCTGCTGAGGCCTTCGGGGAACCTTTGCGTGGGTGGCAG
CTGGTGGCGCTCTCCGCCGACGGTCGGACACGCGTCGACCTGGCGCATCC
TGCAGCCCTGATTCCTGTGGATGAGCGGGAAAGGACCGTGTGCCTAGAGG
TAATCCCTCTTGCCCGCCCTCCTCTCTATACACGCGAAGCGATACAAACT
CGCCTCCGGAGCGAAAGGCAGCACCAGCACCAGCAGCAGCACCACCAGCA
GCAGCGAAAGGATCCTTCTCTCTCTCCTCGCCGACAAGCCCATCCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCC
back to top
Synonyms
Publications