jgi.p|Nanoce1779_2|610537, mRNA_10240 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610537
Unique Name	mRNA_10240
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1433
Alignment location	scaffold_50:103814..105246 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	610623
Track	FilteredModels2
ProteinId	610537

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:103814..105246 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610537	gene_10240	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610537	mRNA_10240-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10240	CDS_10240	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:103814..105246+
coding sequence from alignment at scaffold_50:103814..105246+

mRNA sequence

>mRNA_10240 ID=mRNA_10240|Name=jgi.p|Nanoce1779_2|610537|organism=Nannochloropsis oceanica|type=mRNA|length=1433bp
AACAGGAAATCCTGAAGCGCCCCCAGACCTCCAGCACGAGCCCGGCGGAC
AGAGAGCGAGTGTCCTGGTACCGTAGCCCAACCATTCACTCAACCCTACG
ACACCGTCAGGTCCAGCGCCGCCTCCCCCTAGTGTCTCTCCTTCTCCGTC
CTGTCATCGGCGTTTGCTTGCTGTTTGCCGTCACCGCCCTCTTTTTCAAG
TCCCATCTCAACGCCTCTTCTTCTTCCGCCTCCAGCACTACCGCCATGTC
TACCCCCTCCCCGTCCAAAGAGCAACAACAGCGTGCCCGGGCAAAGGCAG
CAGTCCTCGGAGCCTTTGTCGCCGACGCCGCCAGCTGTCCCTTACAATGG
ATCTACGACCATGCCACCCTCTCGTCCCTCCTAGCCCTCTCTTCCGATCA
AAAGGGGGAGGGATGGGAGGGAGGAAAGGACCCAGCTTTTTACCCCGTAC
CATCCTGCCCTTACTTTACTTACCCACTTGGAGCCTCCAGTCCCTATGGC
GATGAGATTCTCCCTCTGCTCCGCTTCCTGGCGGGGGAGAGAGGGAAGGA
GGGAGCTAAGGAGAAAGAAGGTTTTGATACCGAGGGCTTTGCGAGGGCGA
GCTTTGAATTTCTGGAGGAGTACACGGGACGTCTAAATCATGTCTCGAAA
CTTTTTGTGGAGGCGAGAAAGGCCGGGAAAGAGGGTGCAGCGGCAGCAGT
GGACGACAGTCAAGCGCATGGCCTGGTTAAAGTACCTCTTGTGGTGGCGC
GGTACTACCGCTCTTCCTCCCCCTCTTCCTCGCCCTCTTCCTTGACCTCC
CCTCTCTTCGAGGCTGTGGAGTCCGCCGTGCGTGTCCATCAACAAAACGA
CTTGTCCGTGGCATGCTCTCTGGCGTTTGCGGCTTTGTTACACCGTCTGA
TCGTGGAAGGTGGTGCGATAAAAGACGCGGTGCTGTGGGCTGAGACTTCT
GTCGACAGCCCTCTTCCACCCGCGCAACGTGAGATTCTGAGGGAGGTCAG
GATGGCCGGCAAGAAGGAAGGGAGCGAGGAAGAGACGAGCACGGATATCA
AGGGTAAGCTCAACAGGGAACAAATCAAGGAGTGGGGCATGTCGTGTGCC
TTGCCGGGTGTGTGGAAAGGCTTGTTGTACGCGGCCATGCACGCGACGTC
TTACCGTGAGGCAGTTACGTTCAATATATGGGCCGGGGGGGATGTATGCT
CCCGGAATATAGGGATAGGGGCCTTGTGGGGGGCCGCGGGGGAGGTAGGG
AGGGAGGAGGAGAAACGGGGAATGGGGATTCCGAACGATTGGAGGGAGAA
GACGGATGTGTTGGAGGAAGTGGAGATGTTGGTGGAGAGAGTGCTTGGAC
AATGATGGGGAGGGAGGGGGAGGAAGAGGACGGAGGGAAATGAGCGAGGG
CAGATTCGAATCAAGAAACATACACAACCAATA

protein sequence of jgi.p|Nanoce1779_2|610537

>mRNA_10240-protein ID=mRNA_10240-protein|Name=jgi.p|Nanoce1779_2|610537|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MSTPSPSKEQQQRARAKAAVLGAFVADAASCPLQWIYDHATLSSLLALSS
DQKGEGWEGGKDPAFYPVPSCPYFTYPLGASSPYGDEILPLLRFLAGERG
KEGAKEKEGFDTEGFARASFEFLEEYTGRLNHVSKLFVEARKAGKEGAAA
AVDDSQAHGLVKVPLVVARYYRSSSPSSSPSSLTSPLFEAVESAVRVHQQ
NDLSVACSLAFAALLHRLIVEGGAIKDAVLWAETSVDSPLPPAQREILRE
VRMAGKKEGSEEETSTDIKGKLNREQIKEWGMSCALPGVWKGLLYAAMHA
TSYREAVTFNIWAGGDVCSRNIGIGALWGAAGEVGREEEKRGMGIPNDWR
EKTDVLEEVEMLVERVLGQ*

mRNA from alignment at scaffold_50:103814..105246+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10240 ID=mRNA_10240|Name=jgi.p|Nanoce1779_2|610537|organism=Nannochloropsis oceanica|type=mRNA|length=1433bp|location=Sequence derived from alignment at scaffold_50:103814..105246+ (Nannochloropsis oceanica)
AACAGGAAATCCTGAAGCGCCCCCAGACCTCCAGCACGAGCCCGGCGGAC
AGAGAGCGAGTGTCCTGGTACCGTAGCCCAACCATTCACTCAACCCTACG
ACACCGTCAGGTCCAGCGCCGCCTCCCCCTAGTGTCTCTCCTTCTCCGTC
CTGTCATCGGCGTTTGCTTGCTGTTTGCCGTCACCGCCCTCTTTTTCAAG
TCCCATCTCAACGCCTCTTCTTCTTCCGCCTCCAGCACTACCGCCATGTC
TACCCCCTCCCCGTCCAAAGAGCAACAACAGCGTGCCCGGGCAAAGGCAG
CAGTCCTCGGAGCCTTTGTCGCCGACGCCGCCAGCTGTCCCTTACAATGG
ATCTACGACCATGCCACCCTCTCGTCCCTCCTAGCCCTCTCTTCCGATCA
AAAGGGGGAGGGATGGGAGGGAGGAAAGGACCCAGCTTTTTACCCCGTAC
CATCCTGCCCTTACTTTACTTACCCACTTGGAGCCTCCAGTCCCTATGGC
GATGAGATTCTCCCTCTGCTCCGCTTCCTGGCGGGGGAGAGAGGGAAGGA
GGGAGCTAAGGAGAAAGAAGGTTTTGATACCGAGGGCTTTGCGAGGGCGA
GCTTTGAATTTCTGGAGGAGTACACGGGACGTCTAAATCATGTCTCGAAA
CTTTTTGTGGAGGCGAGAAAGGCCGGGAAAGAGGGTGCAGCGGCAGCAGT
GGACGACAGTCAAGCGCATGGCCTGGTTAAAGTACCTCTTGTGGTGGCGC
GGTACTACCGCTCTTCCTCCCCCTCTTCCTCGCCCTCTTCCTTGACCTCC
CCTCTCTTCGAGGCTGTGGAGTCCGCCGTGCGTGTCCATCAACAAAACGA
CTTGTCCGTGGCATGCTCTCTGGCGTTTGCGGCTTTGTTACACCGTCTGA
TCGTGGAAGGTGGTGCGATAAAAGACGCGGTGCTGTGGGCTGAGACTTCT
GTCGACAGCCCTCTTCCACCCGCGCAACGTGAGATTCTGAGGGAGGTCAG
GATGGCCGGCAAGAAGGAAGGGAGCGAGGAAGAGACGAGCACGGATATCA
AGGGTAAGCTCAACAGGGAACAAATCAAGGAGTGGGGCATGTCGTGTGCC
TTGCCGGGTGTGTGGAAAGGCTTGTTGTACGCGGCCATGCACGCGACGTC
TTACCGTGAGGCAGTTACGTTCAATATATGGGCCGGGGGGGATGTATGCT
CCCGGAATATAGGGATAGGGGCCTTGTGGGGGGCCGCGGGGGAGGTAGGG
AGGGAGGAGGAGAAACGGGGAATGGGGATTCCGAACGATTGGAGGGAGAA
GACGGATGTGTTGGAGGAAGTGGAGATGTTGGTGGAGAGAGTGCTTGGAC
AATGATGGGGAGGGAGGGGGAGGAAGAGGACGGAGGGAAATGAGCGAGGG
CAGATTCGAATCAAGAAACATACACAACCAATA

Coding sequence (CDS) from alignment at scaffold_50:103814..105246+

>mRNA_10240 ID=mRNA_10240|Name=jgi.p|Nanoce1779_2|610537|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at scaffold_50:103814..105246+ (Nannochloropsis oceanica)
ATGTCTACCCCCTCCCCGTCCAAAGAGCAACAACAGCGTGCCCGGGCAAA
GGCAGCAGTCCTCGGAGCCTTTGTCGCCGACGCCGCCAGCTGTCCCTTAC
AATGGATCTACGACCATGCCACCCTCTCGTCCCTCCTAGCCCTCTCTTCC
GATCAAAAGGGGGAGGGATGGGAGGGAGGAAAGGACCCAGCTTTTTACCC
CGTACCATCCTGCCCTTACTTTACTTACCCACTTGGAGCCTCCAGTCCCT
ATGGCGATGAGATTCTCCCTCTGCTCCGCTTCCTGGCGGGGGAGAGAGGG
AAGGAGGGAGCTAAGGAGAAAGAAGGTTTTGATACCGAGGGCTTTGCGAG
GGCGAGCTTTGAATTTCTGGAGGAGTACACGGGACGTCTAAATCATGTCT
CGAAACTTTTTGTGGAGGCGAGAAAGGCCGGGAAAGAGGGTGCAGCGGCA
GCAGTGGACGACAGTCAAGCGCATGGCCTGGTTAAAGTACCTCTTGTGGT
GGCGCGGTACTACCGCTCTTCCTCCCCCTCTTCCTCGCCCTCTTCCTTGA
CCTCCCCTCTCTTCGAGGCTGTGGAGTCCGCCGTGCGTGTCCATCAACAA
AACGACTTGTCCGTGGCATGCTCTCTGGCGTTTGCGGCTTTGTTACACCG
TCTGATCGTGGAAGGTGGTGCGATAAAAGACGCGGTGCTGTGGGCTGAGA
CTTCTGTCGACAGCCCTCTTCCACCCGCGCAACGTGAGATTCTGAGGGAG
GTCAGGATGGCCGGCAAGAAGGAAGGGAGCGAGGAAGAGACGAGCACGGA
TATCAAGGGTAAGCTCAACAGGGAACAAATCAAGGAGTGGGGCATGTCGT
GTGCCTTGCCGGGTGTGTGGAAAGGCTTGTTGTACGCGGCCATGCACGCG
ACGTCTTACCGTGAGGCAGTTACGTTCAATATATGGGCCGGGGGGGATGT
ATGCTCCCGGAATATAGGGATAGGGGCCTTGTGGGGGGCCGCGGGGGAGG
TAGGGAGGGAGGAGGAGAAACGGGGAATGGGGATTCCGAACGATTGGAGG
GAGAAGACGGATGTGTTGGAGGAAGTGGAGATGTTGGTGGAGAGAGTGCT
TGGACAATGA

Synonyms

Publications