jgi.p|Nanoce1779_2|633988, mRNA_10239 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633988
Unique Name	mRNA_10239
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	998
Alignment location	scaffold_50:100629..103450 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	634074
Track	FilteredModels2
ProteinId	633988

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:100629..103450 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633988	gene_10239	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633988	mRNA_10239-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10239	CDS_10239	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:100629..103450+
coding sequence from alignment at scaffold_50:100629..103450+

mRNA sequence

>mRNA_10239 ID=mRNA_10239|Name=jgi.p|Nanoce1779_2|633988|organism=Nannochloropsis oceanica|type=mRNA|length=998bp
ATGAACGAAAATGCAGCAGACAGCAATAACAACAACAAGAACAGCAGCGG
CGCATGGCTTTCCTTCTTCGTCTGTTACTTCTCTTGGATCTCGCCAGCGT
CGCTCATGCCTGTCTTAAAAAAGGAGTTAAATCTGACCACGTCCCAGGTG
CACTTATCGCACCTGGCCACGATAGGCACACCCATCATAGTGAGAATGAT
GGTGGGTGGGTACGTAGATATATACGGGCCGCAAAGAAGCATGTTCATTT
TGTCAGTGACAGGCGCTCTTCCCTTCTTTGTGGGGCCCTATTTGATCCAC
GACTGGGTGGGTGTAGTGTGTTACCGCGCCTGCATCAGCGTGCTGAGCGC
TTCCTTCGTAATGTGTCAAGCATGGACAACCTCCCTTTATGACAGAGAGG
TAGTAGGACAGGCCACTGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGG
GCGATGACGCAGGCGGCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTT
AAGTAGCAGTAAAGGGGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAG
GGAACGTCGGTGCTGTTGCATTCACCTTGCTATTTATGGGGATGGATAGG
GAAGCTAAGAGGAAGGGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGT
GGTATTGGTAGGGGCGTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGG
AGGAGGGGCACAGGGAGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAG
GTTGAGAAGGGAGGAAGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGA
AGAATGCGTGCTTGTTATCAGAAAAAGGGTAGACAGGGCTTTATAGAAGA
GCAACATGGAATGCAAAATAAGAAAATTATCGAAAATTAATAATACGTAG
GCGAATTCAATCTCTGCAAGACCTGGTTCGTGCAGAGGCCTGCACCTTAC
GCGCTAGCAGTCCAACGAAGTAATGAAAGAATGACTTGACTGGCAATC

protein sequence of jgi.p|Nanoce1779_2|633988

>mRNA_10239-protein ID=mRNA_10239-protein|Name=jgi.p|Nanoce1779_2|633988|organism=Nannochloropsis oceanica|type=polypeptide|length=282bp
MNENAADSNNNNKNSSGAWLSFFVCYFSWISPASLMPVLKKELNLTTSQV
HLSHLATIGTPIIVRMMVGGYVDIYGPQRSMFILSVTGALPFFVGPYLIH
DWVGVVCYRACISVLSASFVMCQAWTTSLYDREVVGQATALAAGWGNLGG
AMTQAASGAVYALVPYLSSSKGGASVAGIVGGGGNVGAVAFTLLFMGMDR
EAKRKGGKEGFRVMGLVVLVGACAVWLLDPKKMEEGHREVVEEEGGREEE
VEKGGREDGVAGMRKEEECVLVIRKRVDRAL*

mRNA from alignment at scaffold_50:100629..103450+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10239 ID=mRNA_10239|Name=jgi.p|Nanoce1779_2|633988|organism=Nannochloropsis oceanica|type=mRNA|length=2822bp|location=Sequence derived from alignment at scaffold_50:100629..103450+ (Nannochloropsis oceanica)
ATGAACGAAAATGCAGCAGACAGCAATAACAACAACAAGAACAGCAGCGG
CGGTATGGAGAACGGCAAACATACCGATTCTGCCACCCACGATATTCCGC
CACTACCACCACCGAGCGTCGGCTCCTCTCCCTCCCTCCATCATCCCTCT
GCCCCCTCCTCTTTGCTCCAAAAGTCCTCCACCTTCCAACCCTTCGCCTG
CTGCTACCCCTGTCCTCCCACTTCCCTTGCCTCCCTTCCTCCCCACCTCC
TCTCCTTCCACCTAGCATGGCTTTCCTTCTTCGTCTGTTACTTCTCTTGG
ATCTCGCCAGCGTCGCTCATGCCTGTCTTAAAAAAGGAGTTAAATCTGAC
CACGTCCCAGGTGCACTTATCGCACCTGGCCACGATAGGCACACCCATCA
TAGTGAGAATGATGGTGGGTGGGTACGTAGATATATACGGGCCGCAAAGA
AGCATGTTCATTTTGTCAGTGACAGGTACGTTCCTTCCCCTCTCTTCCTC
TCTCCCTTCTTCCCTCCCTGCTCTAAGAGCGAACCACTCATTTCCCCCTC
CCTTCTTCCTTCCCCCTCTCCTTCCCTAGGCGCTCTTCCCTTCTTTGTGG
GGCCCTATTTGATCCACGACTGGGTGGGTGTAGTGTGTTACCGCGCCTGC
ATCAGCGTGCTGAGTAAGAAGTGCCCCTGCCTCCTTCCCGCCCTCCCATC
CTCCCTCCCTCTTTCCCTCCCTCCCTTCTTCCTCTCTGCCCACCTCATCT
GATGTCTCGTGCATCCTTCCTCCATGACCATCACACTCGCTGCCTCAAGC
CCGTCATATCGACTATCATATCTTCCATACACCTCCACCACTCAATAACC
GACCTACCCCTCCCTCCCTCCCACCCTCCCTCCCTCCTTCCCTCTCTCCC
TCCCTCCCCCTCTCTCAGGCGCTTCCTTCGTAATGTGTCAAGCATGGACA
ACCTCCCTTTATGACAGAGAGGTAGTAGGACAGGCCACTGCTCTAGCGGC
GGGCTGGGGCAACCTTGGGGGGGCGATGACGCAGGTAGGGAGGGAGGGAG
GAAGGGAGGAAGGGAGGGAGGGTGGCCAGAGAAAGGGCGCGAAAAAGTTC
GGAGTGTCAGAATGGTATCGAGGGTGGGTGGGAGGGAGGGAGGGAGGGTG
GGAGGGAAGGAGACAGAAACTCACTAAGCACGCCTGCCTCCCTCCCTTCC
TCCCCTCCTCCCTCTCTCTCTCCCCTAGATTGTAATGGTTGATATCCATC
AGTTGCTGGACCAGGAGCTTCAAGGAGGGAGGGAAAGGGGGGAGGCGTGG
AGACTAACGTTGATGTTTCCGGGTATCTTGCTGCTGGTCATGGCCGGAGT
GGTTTGGAAGTGGGGAGGAGGTCGAGGAGGAGGAGGGAGGGTAGGAGGGC
GGGTGGGAAGGAGGAGTGATGAAGCAGGCGGACGAAAGAAGAAGGAGATG
GGTGGTAATAATTTGCTGGGGAGGGAGGGAGGGAAGGAGGGAGGGAGGGA
AGGAGGGAAGAAGGAGGGGGATGGTCTTGATAGAATGCCGAACAGGCAGG
AGGGGGGGGAGGGAAAGAAGGAGGAAAGGAAGGAGGGAAGGAGGACGGAG
GATGCCTGGGCGGCATGGATGGAGGCAGGGAGGGAGGGAGGGACGTGGAT
CCTTGCCTTGCAGTACGCTCTATCTTTCGGTGTCGAATTGGTAGGTGCCT
CAATCCTCCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCC
TCCCTTCCCACAATTTCGCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCT
CCCTCCCTTCCTCCCTCCCTCTTTCCTCTCCTCTTTTCCCAGGTGACCCT
CAACGAGCTAGCGTCATTTATCTCCACCTCGGTGGCCGAGGGAGGGATGG
GACGAGGAGTGCAGGATGGAGGGAGGATGGGATGGTTGGCCGGGGTGACA
AATATAGGCGCGAGGTTTCTAGGAGGTTGGATGTCGGACTTTGCGCGGAA
AAAGGTGGAAGAGAGAGCGGGGGGGAGAGAGCAGGGTAGGGAGGGGAACG
GCGACAGTAACGGGAGAGTGTCGGAGGACAAGGGAGAGGGAGGGAGGAGA
AAGGGAGGGAGGGGGATGAGGGGGAGGATGCTGGTATTGTTTTGTTTCCT
CGTCGCTGAAGGCGCCTTTTTGCTTGGCTTCAGCCATGTGGCTGGCAGAC
AGGGAGGGAGGGAGGGAGGGAGGGGGGGAGGGAGTGCTTATACGTGGGCA
TGCGTACTGGTGGTGTTGTTTTCGTCGTGCGTTCAGGCGGCGAGCGGTGC
TGTGTATGCTCTTGTTCCCTATTTAAGTAGCAGTAAAGGGGGTGCCAGCG
TGGCTGGGATCGTGGGAGGGGGAGGGAACGTCGGTGCTGTTGCATTCACC
TTGCTATTTATGGGGATGGATAGGGAAGCTAAGAGGAAGGGAGGGAAGGA
GGGATTTCGAGTGATGGGCTTGGTGGTATTGGTAGGGGCGTGCGCGGTGT
GGTTATTGGACCCCAAAAAGATGGAGGAGGGGCACAGGGAGGTGGTGGAG
GAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAAGGGAGGAAGGGAGGACGG
GGTCGCAGGAATGAGGAAGGAGGAAGAATGCGTGCTTGTTATCAGAAAAA
GGGTAGACAGGGCTTTATAGAAGAGCAACATGGAATGCAAAATAAGAAAA
TTATCGAAAATTAATAATACGTAGGCGAATTCAATCTCTGCAAGACCTGG
TTCGTGCAGAGGCCTGCACCTTACGCGCTAGCAGTCCAACGAAGTAATGA
AAGAATGACTTGACTGGCAATC

Coding sequence (CDS) from alignment at scaffold_50:100629..103450+

>mRNA_10239 ID=mRNA_10239|Name=jgi.p|Nanoce1779_2|633988|organism=Nannochloropsis oceanica|type=CDS|length=4230bp|location=Sequence derived from alignment at scaffold_50:100629..103450+ (Nannochloropsis oceanica)
ATGAACGAAAATGCAGCAGACAGCAATAACAACAACAAGAACAGCAGCGG
CGCATGGCTTTCCTTCTTCGTCTGTTACTTCTCTTGGATCTCGCCAGCGT
CGCTCATGCCTGTCTTAAAAAAGGAGTTAAATCTGACCACGTCCCAGGTG
CACTTATCGCACCTGGCCACGATAGGCACACCCATCATAGTGAGAATGAT
GGTGGGTGGGTACGTAGATATATACGGGCCGCAAAGAAGCATGTTCATTT
TGTCAGTGACAGGCGCTCTTCCCTTCTTTGTGGGGCCCTATTTGATCCAC
GACTGGGTGGGTGTAGTGTGTTACCGCGCCTGCATCAGCGTGCTGAGCGC
TTCCTTCGTAATGTGTCAAGCATGGACAACCTCCCTTTATGACAGAGAGG
TAGTAGGACAGGCCACTGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGG
GCGATGACGCAGGCGGCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTT
AAGTAGCAGTAAAGGGGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAG
GGAACGTCGGTGCTGTTGCATTCACCTTGCTATTTATGGGGATGGATAGG
GAAGCTAAGAGGAAGGGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGT
GGTATTGGTAGGGGCGTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGG
AGGAGGGGCACAGGGAGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAG
GTTGAGAAGGGAGGAAGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGA
AGAATGCGTGCTTGTTATCAGAAAAAGGGTAGACAGGGCTTTATAGATGA
ACGAAAATGCAGCAGACAGCAATAACAACAACAAGAACAGCAGCGGCGCA
TGGCTTTCCTTCTTCGTCTGTTACTTCTCTTGGATCTCGCCAGCGTCGCT
CATGCCTGTCTTAAAAAAGGAGTTAAATCTGACCACGTCCCAGGTGCACT
TATCGCACCTGGCCACGATAGGCACACCCATCATAGTGAGAATGATGGTG
GGTGGGTACGTAGATATATACGGGCCGCAAAGAAGCATGTTCATTTTGTC
AGTGACAGGCGCTCTTCCCTTCTTTGTGGGGCCCTATTTGATCCACGACT
GGGTGGGTGTAGTGTGTTACCGCGCCTGCATCAGCGTGCTGAGCGCTTCC
TTCGTAATGTGTCAAGCATGGACAACCTCCCTTTATGACAGAGAGGTAGT
AGGACAGGCCACTGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGGGCGA
TGACGCAGGCGGCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGT
AGCAGTAAAGGGGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAA
CGTCGGTGCTGTTGCATTCACCTTGCTATTTATGGGGATGGATAGGGAAG
CTAAGAGGAAGGGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTA
TTGGTAGGGGCGTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGA
GGGGCACAGGGAGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTG
AGAAGGGAGGAAGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAA
TGCGTGCTTGTTATCAGAAAAAGGGTAGACAGGGCTTTATAGATGAACGA
AAATGCAGCAGACAGCAATAACAACAACAAGAACAGCAGCGGCGCATGGC
TTTCCTTCTTCGTCTGTTACTTCTCTTGGATCTCGCCAGCGTCGCTCATG
CCTGTCTTAAAAAAGGAGTTAAATCTGACCACGTCCCAGGTGCACTTATC
GCACCTGGCCACGATAGGCACACCCATCATAGTGAGAATGATGGTGGGTG
GGTACGTAGATATATACGGGCCGCAAAGAAGCATGTTCATTTTGTCAGTG
ACAGGCGCTCTTCCCTTCTTTGTGGGGCCCTATTTGATCCACGACTGGGT
GGGTGTAGTGTGTTACCGCGCCTGCATCAGCGTGCTGAGCGCTTCCTTCG
TAATGTGTCAAGCATGGACAACCTCCCTTTATGACAGAGAGGTAGTAGGA
CAGGCCACTGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGGGCGATGAC
GCAGGCGGCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGTAGCA
GTAAAGGGGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAACGTC
GGTGCTGTTGCATTCACCTTGCTATTTATGGGGATGGATAGGGAAGCTAA
GAGGAAGGGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTATTGG
TAGGGGCGTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGAGGGG
CACAGGGAGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAA
GGGAGGAAGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAATGCG
TGCTTGTTATCAGAAAAAGGGTAGACAGGGCTTTATAGATGAACGAAAAT
GCAGCAGACAGCAATAACAACAACAAGAACAGCAGCGGCGCATGGCTTTC
CTTCTTCGTCTGTTACTTCTCTTGGATCTCGCCAGCGTCGCTCATGCCTG
TCTTAAAAAAGGAGTTAAATCTGACCACGTCCCAGGTGCACTTATCGCAC
CTGGCCACGATAGGCACACCCATCATAGTGAGAATGATGGTGGGTGGGTA
CGTAGATATATACGGGCCGCAAAGAAGCATGTTCATTTTGTCAGTGACAG
GCGCTCTTCCCTTCTTTGTGGGGCCCTATTTGATCCACGACTGGGTGGGT
GTAGTGTGTTACCGCGCCTGCATCAGCGTGCTGAGCGCTTCCTTCGTAAT
GTGTCAAGCATGGACAACCTCCCTTTATGACAGAGAGGTAGTAGGACAGG
CCACTGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGGGCGATGACGCAG
GCGGCGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGTAGCAGTAA
AGGGGGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAACGTCGGTG
CTGTTGCATTCACCTTGCTATTTATGGGGATGGATAGGGAAGCTAAGAGG
AAGGGAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTATTGGTAGG
GGCGTGCGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGAGGGGCACA
GGGAGGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAAGGGA
GGAAGGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAATGCGTGCT
TGTTATCAGAAAAAGGGTAGACAGGGCTTTATAGATGAACGAAAATGCAG
CAGACAGCAATAACAACAACAAGAACAGCAGCGGCGCATGGCTTTCCTTC
TTCGTCTGTTACTTCTCTTGGATCTCGCCAGCGTCGCTCATGCCTGTCTT
AAAAAAGGAGTTAAATCTGACCACGTCCCAGGTGCACTTATCGCACCTGG
CCACGATAGGCACACCCATCATAGTGAGAATGATGGTGGGTGGGTACGTA
GATATATACGGGCCGCAAAGAAGCATGTTCATTTTGTCAGTGACAGGCGC
TCTTCCCTTCTTTGTGGGGCCCTATTTGATCCACGACTGGGTGGGTGTAG
TGTGTTACCGCGCCTGCATCAGCGTGCTGAGCGCTTCCTTCGTAATGTGT
CAAGCATGGACAACCTCCCTTTATGACAGAGAGGTAGTAGGACAGGCCAC
TGCTCTAGCGGCGGGCTGGGGCAACCTTGGGGGGGCGATGACGCAGGCGG
CGAGCGGTGCTGTGTATGCTCTTGTTCCCTATTTAAGTAGCAGTAAAGGG
GGTGCCAGCGTGGCTGGGATCGTGGGAGGGGGAGGGAACGTCGGTGCTGT
TGCATTCACCTTGCTATTTATGGGGATGGATAGGGAAGCTAAGAGGAAGG
GAGGGAAGGAGGGATTTCGAGTGATGGGCTTGGTGGTATTGGTAGGGGCG
TGCGCGGTGTGGTTATTGGACCCCAAAAAGATGGAGGAGGGGCACAGGGA
GGTGGTGGAGGAGGAGGGAGGGAGGGAGGAGGAGGTTGAGAAGGGAGGAA
GGGAGGACGGGGTCGCAGGAATGAGGAAGGAGGAAGAATGCGTGCTTGTT
ATCAGAAAAAGGGTAGACAGGGCTTTATAG

Synonyms

Publications