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Properties
| Property Name | Value |
|---|
| TranscriptId | 624266 |
| Track | FilteredModels2 |
| ProteinId | 624180 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_50 | supercontig | scaffold_50:94833..97851 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10238 ID=mRNA_10238|Name=jgi.p|Nanoce1779_2|624180|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
ATGAAGCCGACGCAGCAGCAGCTGGAGCAGCCGCCGCTGCCGCGTGGTCG
TCCTCTTATCCGTGCTGGCGACTTTGTGGCTGTCAAGCGCCTCGAGCTGA
CCGATGTGGAGACCGAGGACCTGGCCTCCATCGAAACGGAGATCTTTCTC
CTCAAGAAGCTGAACCATCCCAACATCGTCAAATATGTTGACACCATTCG
CACGGAGCACCACCTGCACATCATCTTGGAACTGATGGAGAACGGTTCCC
TTGCTGGGGTCTGTAAGAAATTTGGCGCCTTCTCCGAATCTCTCTGCGCC
ATCTACATCACACAAGTGCTCCATGGCCTTCAATATCTCCACGAGCAAGG
CGTCCTTCACCGGGACATTAAGGGGGCGAACATTCTCACGACCAAAGACG
GACATGTTAAGCTTGCGGATTTCGGGGTCGCGATCCGCCTCAACGCCCAC
CCGCCCCTCGGGGAGGGGGAGGACGAGGACAAGGAGGGGAGGGAGGAAGA
GGTGGATGTGGTGGGGTCACCATACTGGATGGCGCCGGAGGTCATCGAAA
TGAATGCTCCAACATCGGCGTGTGACGTCTGGTCCCTTGGTTGCACGTGC
TTGGAGCTGATGAGCGAAGGAGCCTCTGCTGCGTAA back to topprotein sequence of jgi.p|Nanoce1779_2|624180 >mRNA_10238-protein ID=mRNA_10238-protein|Name=jgi.p|Nanoce1779_2|624180|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MKPTQQQLEQPPLPRGRPLIRAGDFVAVKRLELTDVETEDLASIETEIFL
LKKLNHPNIVKYVDTIRTEHHLHIILELMENGSLAGVCKKFGAFSESLCA
IYITQVLHGLQYLHEQGVLHRDIKGANILTTKDGHVKLADFGVAIRLNAH
PPLGEGEDEDKEGREEEVDVVGSPYWMAPEVIEMNAPTSACDVWSLGCTC
LELMSEGASAA* back to topmRNA from alignment at scaffold_50:94833..97851- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10238 ID=mRNA_10238|Name=jgi.p|Nanoce1779_2|624180|organism=Nannochloropsis oceanica|type=mRNA|length=3019bp|location=Sequence derived from alignment at scaffold_50:94833..97851- (Nannochloropsis oceanica)
ATGAAGCCGACGCAGCAGCAGCTGGAGCAGCCGCCGCTGCCGCGTGGTCG
TCCTCTTATCCGTGCTGGTATGGAGGGGGAGGGAGGGAGGGAAGGGGGAA
GGGAGGGGCGGTGGGAGGGGAAAGACGCGGAGAGTCATGAAGGGATGGGA
ATGCGGAAATAAAAGATGGGAGAAGTACGGTGTGAGAAGATAGGAATGGT
GGTTGATATGAAAAGGAGGATGAGGGAAGCAAACAGGCCTGTTCACAACT
TCTTCCTTACCCTCCCCTCCCCCCTCCTTCCCATCCCTTTCAGGCTCCGG
TCGAGACCGCCCAGACAATGACCGCTTGCAACGTGAGAATGATGGTAGGA
GCAATAGAGGGAGCAACCGCTACAGCAGCACCAAGCCGCGGAGCAGCAGT
CCTCTGGCGATCCCGGCCCCTAATGGCGAGGTCGAGGACGAGGACGTGGA
GGATGGCGAGGACGAGGATGGGGGAAAGGGTTGGGGTGCTACAATCAGGC
AATGCCCTTCCACCTCTCATCCTGCTCTGACTGTTGCTGCTTCTGCTGGT
CCTGCTCGTCATTTACAGCATTTCGAGCAAGAACACGAGCTACAGCAGCA
CCAGCACCAGCTTGGCACTCGCCTCACTGCCGCAGAAGGGGGTAATCTAA
TTCGAAGCGGCTCCTCCTACTCACAGAGGAGAAAGAGTAATAAACGGTCC
TCCCCCTCCTCCCCCCTTCTGTCCTGCTCCTCTTCTTCTTGTTCGTCACT
GGACTCTCTGCTGTCACGAGATGAAGACGTCGAGGAGGAAGATGAGGGAG
AGGAAGCAGAGGGGGCATGGATTGAGGAAGAACGCCAGAAAGCGAAAGTA
TTTTCATTCCCTCCCTCTATCATTACCTCCCTTCCATCCTCTCCACCACT
CCCCCTTTCCCCCAGCCACCGACCCCTCCCACTCATCCCTCAGCAGCAGC
AGCAGCAGCGGTGCGAACAACGGCAGCCCCAAGGCAGCAACAGCAGCAGC
AGCAGCAGCAGCAGTAAACCCCACCACTTTTCCTCCTCGTCCCCATCCTC
TCCCTCCCTCCCCTCCTCTCCGTCCCTCCTCCTCCGCCGAGGCAGCAGCA
GCTACAACAGTAACAGCAGAAGCAGTTTTAGACACAGCAACAGCATCAGC
AGCACCGGCAGCAACGGCTTCCGACGGCCCCACCGACCTCGCTCTCCTCT
GTCCCCTCCCTCCCACGCCCACTCCCCCCCTTCCTCCCTCCCACCATCCC
CTCTCTCCAAGGGCAACCGAGGCCTCCAGCCTTCCTCCCCCTCCACCTCC
TCCCCCTCCTCCCCATCCTCCGTCAGGCCCGCTTCAGTCCCTGCCCTCGT
CAGAATCTCGAACGAGAACGCGACCTATCAACTGGGAGCCGAATTAGGAA
GAGGTGGTTTCGGCGCTGTTTTTCAAGCACTCAATATAGGTACGTTCTAG
CCTGCCCTCCCTCCTTTCCTCCTTCCCTTCCTGTCTCCCTCCCTTTCCCC
CCGTGATCAGTAACGTTTGGAAGTGCCTTGTGCTCCCTCCCTCTCTCTCT
CCCTCCCTCGACCCACACCCCCACAAACCCTCACACACACACACCCTCAC
GCACACACACACACACACACACTGCGGTCTTGTACCCGTGCTCACACCCA
CCCACACACTGACACCTTCATCACAGACACAGGCGACTTTGTGGCTGTCA
AGCGCCTCGAGCTGACCGATGTGGAGACCGAGGACCTGGCCTCCATCGAA
ACGGAGATCTTTCTCCTCAAGAAGCTGAACCATCCCAACATCGTCAAATA
TGTTGACACCATTCGCACGGAGCACCACCTGCACATCATCTTGGAACTGA
TGGAGAACGGTAAATACAGGCGGCGTTAGACCCCCCTTCGCTTCCTCCCA
CCCTTCCAGCTCCCTTCTCCCCATCCCTTGTCCTTCCTTTCGACAGAGTA
CGTGCGGTAGGCTAAGCATTGCCTTCCCTCCCCTCCTCCCTCCCTCCCTC
CTTTAGGTTCCCTTGCTGGGGTCTGTAAGAAATTTGGCGCCTTCTCCGAA
TCTCTCTGCGCCATCTACATCACACAAGTACGTTCCCTCCCTCCCTCCCT
TTAAATCTCCTCCCCCTGCCCAAAATAGAGGCCATGCCCAAGCTCCCTCA
CTCACCGCCGTTGCTCTACACATTCGTTTCTTTCTTATACTTCTTTTTTT
TAATTGGAAAATTAAAAAAGATAAACAAAACGGTTACCATTTCTCAATCC
GTTTCATTTCCTCGGGCTGTTCCGCCTTTTGGACACACCGCAGGTGCTCC
ATGGCCTTCAATATCTCCACGAGCAAGGCGTCCTTCACCGGGACATTAAG
GGGGCGAACATTCTCACGACCAAAGACGGACATGTTAAGCTTGCGGATTT
CGGGGTCGCGATCCGCCTCAACGCCCACCCGCCCCTCGGGGAGGGGGAGG
ACGAGGACAAGGAGGGGAGGGAGGAAGAGGTGGATGTGGTGGGGTCACCA
TACTGGATGGCGCCGGAGGTCATCGAAATGAATGCTCCAACATCGGCGTG
TGACGTCTGGTCCCTTGGTTGCACGTGCTTGGAGCTGATGAGCGGTGGGA
AGCCGCCTTATTTCCATCTCGGTAGGTTAATGGTTGCAATTTTTTATGTT
ATATGTGTACATACATTACTACATTACTACTTATTACGTCCATTTGGTGT
GGTGCATGTCTCTGTCCTCTGAGCGCGCTACATCCGCACCTCTTCGTTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCGGGTACCA
CACACCCAGCAACTGCAGCCATGCTCGCCTTTGTCCTCCTTTCCTCCTCC
TCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGCGCCCATG
GCGGCTCTCTTTCGGATCGTCCAGGATGATGCCCCTCCCCTCCCCACCCA
CGGCATCAGCGAAAATCTTCGTTCTTTTCTTCTCCTCGGTTGCTTTCAGA
AGGAGCCTCTGCTGCGTAA back to topCoding sequence (CDS) from alignment at scaffold_50:94833..97851- >mRNA_10238 ID=mRNA_10238|Name=jgi.p|Nanoce1779_2|624180|organism=Nannochloropsis oceanica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_50:94833..97851- (Nannochloropsis oceanica)
AAGGAGCCTCTGCTGCGTAAGTGCTCCATGGCCTTCAATATCTCCACGAG
CAAGGCGTCCTTCACCGGGACATTAAGGGGGCGAACATTCTCACGACCAA
AGACGGACATGTTAAGCTTGCGGATTTCGGGGTCGCGATCCGCCTCAACG
CCCACCCGCCCCTCGGGGAGGGGGAGGACGAGGACAAGGAGGGGAGGGAG
GAAGAGGTGGATGTGGTGGGGTCACCATACTGGATGGCGCCGGAGGTCAT
CGAAATGAATGCTCCAACATCGGCGTGTGACGTCTGGTCCCTTGGTTGCA
CGTGCTTGGAGCTGATGAGCGGTTCCCTTGCTGGGGTCTGTAAGAAATTT
GGCGCCTTCTCCGAATCTCTCTGCGCCATCTACATCACACAAGCGACTTT
GTGGCTGTCAAGCGCCTCGAGCTGACCGATGTGGAGACCGAGGACCTGGC
CTCCATCGAAACGGAGATCTTTCTCCTCAAGAAGCTGAACCATCCCAACA
TCGTCAAATATGTTGACACCATTCGCACGGAGCACCACCTGCACATCATC
TTGGAACTGATGGAGAACGATGAAGCCGACGCAGCAGCAGCTGGAGCAGC
CGCCGCTGCCGCGTGGTCGTCCTCTTATCCGTGCTGAAGGAGCCTCTGCT
GCGTAAGTGCTCCATGGCCTTCAATATCTCCACGAGCAAGGCGTCCTTCA
CCGGGACATTAAGGGGGCGAACATTCTCACGACCAAAGACGGACATGTTA
AGCTTGCGGATTTCGGGGTCGCGATCCGCCTCAACGCCCACCCGCCCCTC
GGGGAGGGGGAGGACGAGGACAAGGAGGGGAGGGAGGAAGAGGTGGATGT
GGTGGGGTCACCATACTGGATGGCGCCGGAGGTCATCGAAATGAATGCTC
CAACATCGGCGTGTGACGTCTGGTCCCTTGGTTGCACGTGCTTGGAGCTG
ATGAGCGGTTCCCTTGCTGGGGTCTGTAAGAAATTTGGCGCCTTCTCCGA
ATCTCTCTGCGCCATCTACATCACACAAGCGACTTTGTGGCTGTCAAGCG
CCTCGAGCTGACCGATGTGGAGACCGAGGACCTGGCCTCCATCGAAACGG
AGATCTTTCTCCTCAAGAAGCTGAACCATCCCAACATCGTCAAATATGTT
GACACCATTCGCACGGAGCACCACCTGCACATCATCTTGGAACTGATGGA
GAACGATGAAGCCGACGCAGCAGCAGCTGGAGCAGCCGCCGCTGCCGCGT
GGTCGTCCTCTTATCCGTGCTGAAGGAGCCTCTGCTGCGTAAGTGCTCCA
TGGCCTTCAATATCTCCACGAGCAAGGCGTCCTTCACCGGGACATTAAGG
GGGCGAACATTCTCACGACCAAAGACGGACATGTTAAGCTTGCGGATTTC
GGGGTCGCGATCCGCCTCAACGCCCACCCGCCCCTCGGGGAGGGGGAGGA
CGAGGACAAGGAGGGGAGGGAGGAAGAGGTGGATGTGGTGGGGTCACCAT
ACTGGATGGCGCCGGAGGTCATCGAAATGAATGCTCCAACATCGGCGTGT
GACGTCTGGTCCCTTGGTTGCACGTGCTTGGAGCTGATGAGCGGTTCCCT
TGCTGGGGTCTGTAAGAAATTTGGCGCCTTCTCCGAATCTCTCTGCGCCA
TCTACATCACACAAGCGACTTTGTGGCTGTCAAGCGCCTCGAGCTGACCG
ATGTGGAGACCGAGGACCTGGCCTCCATCGAAACGGAGATCTTTCTCCTC
AAGAAGCTGAACCATCCCAACATCGTCAAATATGTTGACACCATTCGCAC
GGAGCACCACCTGCACATCATCTTGGAACTGATGGAGAACGATGAAGCCG
ACGCAGCAGCAGCTGGAGCAGCCGCCGCTGCCGCGTGGTCGTCCTCTTAT
CCGTGCTGAAGGAGCCTCTGCTGCGTAAGTGCTCCATGGCCTTCAATATC
TCCACGAGCAAGGCGTCCTTCACCGGGACATTAAGGGGGCGAACATTCTC
ACGACCAAAGACGGACATGTTAAGCTTGCGGATTTCGGGGTCGCGATCCG
CCTCAACGCCCACCCGCCCCTCGGGGAGGGGGAGGACGAGGACAAGGAGG
GGAGGGAGGAAGAGGTGGATGTGGTGGGGTCACCATACTGGATGGCGCCG
GAGGTCATCGAAATGAATGCTCCAACATCGGCGTGTGACGTCTGGTCCCT
TGGTTGCACGTGCTTGGAGCTGATGAGCGGTTCCCTTGCTGGGGTCTGTA
AGAAATTTGGCGCCTTCTCCGAATCTCTCTGCGCCATCTACATCACACAA
GCGACTTTGTGGCTGTCAAGCGCCTCGAGCTGACCGATGTGGAGACCGAG
GACCTGGCCTCCATCGAAACGGAGATCTTTCTCCTCAAGAAGCTGAACCA
TCCCAACATCGTCAAATATGTTGACACCATTCGCACGGAGCACCACCTGC
ACATCATCTTGGAACTGATGGAGAACGATGAAGCCGACGCAGCAGCAGCT
GGAGCAGCCGCCGCTGCCGCGTGGTCGTCCTCTTATCCGTGCTGAAGGAG
CCTCTGCTGCGTAAGTGCTCCATGGCCTTCAATATCTCCACGAGCAAGGC
GTCCTTCACCGGGACATTAAGGGGGCGAACATTCTCACGACCAAAGACGG
ACATGTTAAGCTTGCGGATTTCGGGGTCGCGATCCGCCTCAACGCCCACC
CGCCCCTCGGGGAGGGGGAGGACGAGGACAAGGAGGGGAGGGAGGAAGAG
GTGGATGTGGTGGGGTCACCATACTGGATGGCGCCGGAGGTCATCGAAAT
GAATGCTCCAACATCGGCGTGTGACGTCTGGTCCCTTGGTTGCACGTGCT
TGGAGCTGATGAGCGGTTCCCTTGCTGGGGTCTGTAAGAAATTTGGCGCC
TTCTCCGAATCTCTCTGCGCCATCTACATCACACAAGCGACTTTGTGGCT
GTCAAGCGCCTCGAGCTGACCGATGTGGAGACCGAGGACCTGGCCTCCAT
CGAAACGGAGATCTTTCTCCTCAAGAAGCTGAACCATCCCAACATCGTCA
AATATGTTGACACCATTCGCACGGAGCACCACCTGCACATCATCTTGGAA
CTGATGGAGAACGATGAAGCCGACGCAGCAGCAGCTGGAGCAGCCGCCGC
TGCCGCGTGGTCGTCCTCTTATCCGTGCTG back to top
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