jgi.p|Nanoce1779_2|610518, mRNA_10236 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|610518
Unique Name	mRNA_10236
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1146
Alignment location	scaffold_50:85612..86757 -

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Properties


Property Name	Value
TranscriptId	610604
Track	FilteredModels2
ProteinId	610518

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:85612..86757 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610518	gene_10236	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|610518	mRNA_10236-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10236	CDS_10236	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:85612..86757-
coding sequence from alignment at scaffold_50:85612..86757-

mRNA sequence

>mRNA_10236 ID=mRNA_10236|Name=jgi.p|Nanoce1779_2|610518|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp
TTTTTAATGATTTGCTCTGCTATTCTTTCCTTGTCCTCTTCTCTTCTTCT
CCTATCATCTTCTCTCGGATTCTGCGATTTCCCTGAAGACTGAGGAGAAA
TCCAAGCGTACTGTATATCCGTCCTTCTATCCTTCAATTTTTCTTTTCTT
TTATTATTTGTCTGTTACGCAGTCATCCTCCTTGATTGCTTCTCCCCTCT
TTCTCCTGACGCGCACATACACAAGTAAATGAGAACGCACACACACGTCC
AAACGCAGTACTATCTATGAGTTGGTGTATATATCTATATATCAAGAGAA
TTGTAAATGTGGTGACTTAAGTTTGTCGCAAGCACGCCTTTTCTCTTCTC
TCCTTCCTCTTTCTTTCGCACTTTCCGTCCTTCCTACGATCCCGCCCTCC
TGTCCCCTTTCTTACACAGACATTTAGACAGAAGAGGGTCGGCCTGAGAT
ACACACAGTGCTCCTTGTCACTTCAGCCAATAGTATTAAAAGTGGTGGTT
TTTATTTGACTTTTACTTTGACGGAAATCAAGATTTTGATTCCCAAAGTC
CACTATATGTTACTGTTTTATGAAAATGGATGCATATGTATCTATGTATA
TTGTGTGTGTGTGCGCGTGGGTTGGTGTGTGTGATTGATACATGCTTCTT
TATCCTCATCTTCTCTGACTCCGACTCCCTTCAATGGTGGCTTTGCCATC
TTTCTTCCGACTACCACTTCCCCGCGTTGTTGCTCAAGGCGTTTCATTCC
TCTGCATTATTTCCACCCATCTTCTCCTTCTCTCTCTTTTTCTCTCTTTT
GTTTTTTAGGCCTGGTATTCGTACACTACCCTCTTCAAAACTGCCTCTCC
CTCCTCCTCGACCTCCTCCTCTTCGTTCCTGGGCGCTTGAACGCATCCTC
TTTTTTAACCGGATCATGGCGCATGTCATGTTTAAAGAGAGACATAATGT
CTTGACGAAGAAACATGAAAATCTAAAATACATCCAAACAAATATTATGT
AGCCGAGGACACGGGATCAATTGGAGGCCCTAAGCAGAAAGTTGGGGGAA
AGGATCGGATCGAGAAGGAAAGGAGGGCGCACCACACACAAGAGCGCGTA
CACGACTGACTCGACTCTCATCTCTGTCCCTCTCTCTCTCTCTCTG

protein sequence of jgi.p|Nanoce1779_2|610518

>mRNA_10236-protein ID=mRNA_10236-protein|Name=jgi.p|Nanoce1779_2|610518|organism=Nannochloropsis oceanica|type=polypeptide|length=141bp
MHMYLCILCVCARGLVCVIDTCFFILIFSDSDSLQWWLCHLSSDYHFPAL
LLKAFHSSALFPPIFSFSLFFSLLFFRPGIRTLPSSKLPLPPPRPPPLRS
WALERILFFNRIMAHVMFKERHNVLTKKHENLKYIQTNIM*

mRNA from alignment at scaffold_50:85612..86757-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10236 ID=mRNA_10236|Name=jgi.p|Nanoce1779_2|610518|organism=Nannochloropsis oceanica|type=mRNA|length=1146bp|location=Sequence derived from alignment at scaffold_50:85612..86757- (Nannochloropsis oceanica)
TTTTTAATGATTTGCTCTGCTATTCTTTCCTTGTCCTCTTCTCTTCTTCT
CCTATCATCTTCTCTCGGATTCTGCGATTTCCCTGAAGACTGAGGAGAAA
TCCAAGCGTACTGTATATCCGTCCTTCTATCCTTCAATTTTTCTTTTCTT
TTATTATTTGTCTGTTACGCAGTCATCCTCCTTGATTGCTTCTCCCCTCT
TTCTCCTGACGCGCACATACACAAGTAAATGAGAACGCACACACACGTCC
AAACGCAGTACTATCTATGAGTTGGTGTATATATCTATATATCAAGAGAA
TTGTAAATGTGGTGACTTAAGTTTGTCGCAAGCACGCCTTTTCTCTTCTC
TCCTTCCTCTTTCTTTCGCACTTTCCGTCCTTCCTACGATCCCGCCCTCC
TGTCCCCTTTCTTACACAGACATTTAGACAGAAGAGGGTCGGCCTGAGAT
ACACACAGTGCTCCTTGTCACTTCAGCCAATAGTATTAAAAGTGGTGGTT
TTTATTTGACTTTTACTTTGACGGAAATCAAGATTTTGATTCCCAAAGTC
CACTATATGTTACTGTTTTATGAAAATGGATGCATATGTATCTATGTATA
TTGTGTGTGTGTGCGCGTGGGTTGGTGTGTGTGATTGATACATGCTTCTT
TATCCTCATCTTCTCTGACTCCGACTCCCTTCAATGGTGGCTTTGCCATC
TTTCTTCCGACTACCACTTCCCCGCGTTGTTGCTCAAGGCGTTTCATTCC
TCTGCATTATTTCCACCCATCTTCTCCTTCTCTCTCTTTTTCTCTCTTTT
GTTTTTTAGGCCTGGTATTCGTACACTACCCTCTTCAAAACTGCCTCTCC
CTCCTCCTCGACCTCCTCCTCTTCGTTCCTGGGCGCTTGAACGCATCCTC
TTTTTTAACCGGATCATGGCGCATGTCATGTTTAAAGAGAGACATAATGT
CTTGACGAAGAAACATGAAAATCTAAAATACATCCAAACAAATATTATGT
AGCCGAGGACACGGGATCAATTGGAGGCCCTAAGCAGAAAGTTGGGGGAA
AGGATCGGATCGAGAAGGAAAGGAGGGCGCACCACACACAAGAGCGCGTA
CACGACTGACTCGACTCTCATCTCTGTCCCTCTCTCTCTCTCTCTG

Coding sequence (CDS) from alignment at scaffold_50:85612..86757-

>mRNA_10236 ID=mRNA_10236|Name=jgi.p|Nanoce1779_2|610518|organism=Nannochloropsis oceanica|type=CDS|length=423bp|location=Sequence derived from alignment at scaffold_50:85612..86757- (Nannochloropsis oceanica)
ATGCATATGTATCTATGTATATTGTGTGTGTGTGCGCGTGGGTTGGTGTG
TGTGATTGATACATGCTTCTTTATCCTCATCTTCTCTGACTCCGACTCCC
TTCAATGGTGGCTTTGCCATCTTTCTTCCGACTACCACTTCCCCGCGTTG
TTGCTCAAGGCGTTTCATTCCTCTGCATTATTTCCACCCATCTTCTCCTT
CTCTCTCTTTTTCTCTCTTTTGTTTTTTAGGCCTGGTATTCGTACACTAC
CCTCTTCAAAACTGCCTCTCCCTCCTCCTCGACCTCCTCCTCTTCGTTCC
TGGGCGCTTGAACGCATCCTCTTTTTTAACCGGATCATGGCGCATGTCAT
GTTTAAAGAGAGACATAATGTCTTGACGAAGAAACATGAAAATCTAAAAT
ACATCCAAACAAATATTATGTAG

Synonyms

Publications