jgi.p|Nanoce1779_2|569710, mRNA_10235 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|569710
Unique Name	mRNA_10235
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	702
Alignment location	scaffold_50:84111..85473 +

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Properties


Property Name	Value
TranscriptId	569796
Track	FilteredModels2
ProteinId	569710

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:84111..85473 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569710	gene_10235	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|569710	mRNA_10235-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10235	CDS_10235	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:84111..85473+
coding sequence from alignment at scaffold_50:84111..85473+

mRNA sequence

>mRNA_10235 ID=mRNA_10235|Name=jgi.p|Nanoce1779_2|569710|organism=Nannochloropsis oceanica|type=mRNA|length=702bp
ATGCATGATGCAGTGCATCGATCCGTCTCCCGTCACAAGTGGCTCAACGA
ACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCCTCCCGGCCT
ACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTGCCCGACAAG
GACCCAGACATGTGGACATCTGGGAACGGCATGCATCCGCCTACTTTCCT
CTTGCCTTTCTTCTGGCTAACGCAGAACCTCTATAATTACTACTGGTACT
GGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCTTCCGGTCATCTTC
TCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCCTGACCAACGAACA
CGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGCTGTTTCTCGGACA
CCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCGCCCGCACGAGATC
ACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTTTCGGGGTTTTT
CTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTTGATGCAGCAGA
ACTACCACAACATCCACCACCTGTACCCGATGATTCCCTGGTATCGGTAC
AAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAGCTGGGCACGCC
GCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAACGACCGAGAGT
AG

protein sequence of jgi.p|Nanoce1779_2|569710

>mRNA_10235-protein ID=mRNA_10235-protein|Name=jgi.p|Nanoce1779_2|569710|organism=Nannochloropsis oceanica|type=polypeptide|length=234bp
MHDAVHRSVSRHKWLNELIGWGAGIAFLAPLPAYRHIHLEHHKHTNVPDK
DPDMWTSGNGMHPPTFLLPFFWLTQNLYNYYWYWLQLTTRPLDESLPVIF
SVLGIIVSIVYALTNEHGYLLVRFLLLPRCFSDTFLAYSFDYAPHRPHEI
TRAENIYACTAQLSGFFSPTEKDVDLSAILMQQNYHNIHHLYPMIPWYRY
KKVWLNHEKEFRELGTPLANWLGPLHLVKNDRE*

mRNA from alignment at scaffold_50:84111..85473+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10235 ID=mRNA_10235|Name=jgi.p|Nanoce1779_2|569710|organism=Nannochloropsis oceanica|type=mRNA|length=1363bp|location=Sequence derived from alignment at scaffold_50:84111..85473+ (Nannochloropsis oceanica)
ATGCATGATGCAGTGCATCGGTACGCCCGCCCTCCTTCGCTTCTTCCCTC
CTTCCCTCCTTCCCTCCCTCCCTCCCTCTCTCTCTCCCTCTCCCTCTCCT
TCCTTCCCTCTTTCATCGTCTCCGCTTTCTCAAGCCCATCATTTTGACAA
CGTTCACATCATCTTATCTCCTACATCCTTCCCAACACATCATCCATCTT
TCCCGGCCCCTCCCTCGCTCCCTCCCAAGATCCGTCTCCCGTCACAAGTG
GCTCAACGAACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCC
TCCCGGCCTACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTG
CCCGACAAGGACCCGTACGTCCTCCCTCCCTCCCACCCTTCCTCCCTCCC
TCCCTCCCTCCCTGTCGACCCCCTCTTGCTAGGCCGGAGATTTTGCCCGT
GTACGCTCTCAAACGATAGACTTCCTGATCCCTCCCTCCCTCCTTGTCTC
CCTCCCTCCCTCCCTCCCTCCATCACAGAGACATGTGGACATCTGGGAAC
GGCATGCATCCGCCTACTTTCCTCTTGCCTTTCTTCTGGCTAACGCAGAA
CCTCTATAATTACTACTGGTGAGGAGGCAGGAAGGAAGATGAAGGAAGCT
AACATATATTATTTTAATTACCCTTCTTGTATCCACCAAATCCAATCGAT
TGACTAAGGAACTAATTCATTCATTCATGCATTCGTCATCCTTTGTATCC
CTCCTCAGGTACTGGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCT
TCCGGTCATCTTCTCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCC
TGACCAACGAACACGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGC
TGTTTCTCGGACACCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCG
CCCGCACGAGATCACCAGGTTAGCCTTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCTTGCAAACCCCGTTCCACCCTTCCTTCTTACATATATATATATA
TATATGTGTATATGTATACATATGCACTTAAATGATTGCCCAACCCCCAT
ACTTCCACCCCACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTT
TCGGGGTTTTTCTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTT
GATGCAGCAGAACTACCACAACATCCACCACCTGTACCCGATGATTCCCT
GGTATCGGTACAAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAG
CTGGGCACGCCGCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAA
CGACCGAGAGTAG

Coding sequence (CDS) from alignment at scaffold_50:84111..85473+

>mRNA_10235 ID=mRNA_10235|Name=jgi.p|Nanoce1779_2|569710|organism=Nannochloropsis oceanica|type=CDS|length=3510bp|location=Sequence derived from alignment at scaffold_50:84111..85473+ (Nannochloropsis oceanica)
ATGCATGATGCAGTGCATCGATCCGTCTCCCGTCACAAGTGGCTCAACGA
ACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCCTCCCGGCCT
ACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTGCCCGACAAG
GACCCAGACATGTGGACATCTGGGAACGGCATGCATCCGCCTACTTTCCT
CTTGCCTTTCTTCTGGCTAACGCAGAACCTCTATAATTACTACTGGTACT
GGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCTTCCGGTCATCTTC
TCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCCTGACCAACGAACA
CGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGCTGTTTCTCGGACA
CCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCGCCCGCACGAGATC
ACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTTTCGGGGTTTTT
CTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTTGATGCAGCAGA
ACTACCACAACATCCACCACCTGTACCCGATGATTCCCTGGTATCGGTAC
AAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAGCTGGGCACGCC
GCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAACGACCGAGAGT
AGATGCATGATGCAGTGCATCGATCCGTCTCCCGTCACAAGTGGCTCAAC
GAACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCCTCCCGGC
CTACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTGCCCGACA
AGGACCCAGACATGTGGACATCTGGGAACGGCATGCATCCGCCTACTTTC
CTCTTGCCTTTCTTCTGGCTAACGCAGAACCTCTATAATTACTACTGGTA
CTGGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCTTCCGGTCATCT
TCTCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCCTGACCAACGAA
CACGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGCTGTTTCTCGGA
CACCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCGCCCGCACGAGA
TCACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTTTCGGGGTTT
TTCTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTTGATGCAGCA
GAACTACCACAACATCCACCACCTGTACCCGATGATTCCCTGGTATCGGT
ACAAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAGCTGGGCACG
CCGCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAACGACCGAGA
GTAGATGCATGATGCAGTGCATCGATCCGTCTCCCGTCACAAGTGGCTCA
ACGAACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCCTCCCG
GCCTACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTGCCCGA
CAAGGACCCAGACATGTGGACATCTGGGAACGGCATGCATCCGCCTACTT
TCCTCTTGCCTTTCTTCTGGCTAACGCAGAACCTCTATAATTACTACTGG
TACTGGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCTTCCGGTCAT
CTTCTCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCCTGACCAACG
AACACGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGCTGTTTCTCG
GACACCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCGCCCGCACGA
GATCACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTTTCGGGGT
TTTTCTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTTGATGCAG
CAGAACTACCACAACATCCACCACCTGTACCCGATGATTCCCTGGTATCG
GTACAAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAGCTGGGCA
CGCCGCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAACGACCGA
GAGTAGATGCATGATGCAGTGCATCGATCCGTCTCCCGTCACAAGTGGCT
CAACGAACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCCTCC
CGGCCTACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTGCCC
GACAAGGACCCAGACATGTGGACATCTGGGAACGGCATGCATCCGCCTAC
TTTCCTCTTGCCTTTCTTCTGGCTAACGCAGAACCTCTATAATTACTACT
GGTACTGGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCTTCCGGTC
ATCTTCTCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCCTGACCAA
CGAACACGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGCTGTTTCT
CGGACACCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCGCCCGCAC
GAGATCACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTTTCGGG
GTTTTTCTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTTGATGC
AGCAGAACTACCACAACATCCACCACCTGTACCCGATGATTCCCTGGTAT
CGGTACAAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAGCTGGG
CACGCCGCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAACGACC
GAGAGTAGATGCATGATGCAGTGCATCGATCCGTCTCCCGTCACAAGTGG
CTCAACGAACTCATCGGTTGGGGCGCAGGTATCGCCTTCCTCGCCCCCCT
CCCGGCCTACCGCCATATCCACCTGGAACACCACAAGCATACCAACGTGC
CCGACAAGGACCCAGACATGTGGACATCTGGGAACGGCATGCATCCGCCT
ACTTTCCTCTTGCCTTTCTTCTGGCTAACGCAGAACCTCTATAATTACTA
CTGGTACTGGCTGCAGCTGACCACCCGCCCGCTGGATGAGAGCCTTCCGG
TCATCTTCTCTGTGCTGGGTATCATAGTCAGCATCGTGTATGCCCTGACC
AACGAACACGGCTACCTCCTCGTCCGTTTCCTCCTACTCCCCCGCTGTTT
CTCGGACACCTTTTTGGCCTACTCCTTTGATTACGCGCCTCATCGCCCGC
ACGAGATCACCAGGGCCGAGAACATCTACGCCTGTACAGCGCAACTTTCG
GGGTTTTTCTCACCGACCGAAAAAGACGTGGACCTGTCGGCCATTTTGAT
GCAGCAGAACTACCACAACATCCACCACCTGTACCCGATGATTCCCTGGT
ATCGGTACAAGAAGGTGTGGCTCAATCATGAGAAGGAATTCAGGGAGCTG
GGCACGCCGCTGGCGAACTGGCTCGGGCCGTTGCATTTGGTCAAGAACGA
CCGAGAGTAG

Synonyms

Publications