jgi.p|Nanoce1779_2|342551, mRNA_10233 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|342551
Unique Name	mRNA_10233
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1219
Alignment location	scaffold_50:80239..81815 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	342637
Track	FilteredModels2
ProteinId	342551

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_50	supercontig	scaffold_50:80239..81815 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|342551	gene_10233	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|342551	mRNA_10233-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10233	CDS_10233	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_50:80239..81815+
coding sequence from alignment at scaffold_50:80239..81815+

mRNA sequence

>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Nanoce1779_2|342551|organism=Nannochloropsis oceanica|type=mRNA|length=1219bp
CCGAGACACGCAAGCTACTTGTTAATCCATCCTCCCTGTCTTTCCTCCCC
CATCCTCCCTCCCCCTCTCCTTCCCCTTCTCCCTCCCTGCTCCCAGATCT
ACGAAGTCATGGACTTCTTCCTGTTTAGTATCCGCCCCGACAACACCTAC
AAGGGTACCCTCTCCTTCCATTTCCACACTCCTTCTTCCCTTCCCTCTTC
GTCGTCGTCCTCCTCCTTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGC
GGCATTACTACCATCATCACCACCCTGAGGAGGAGCACCAGCAGCCTGCC
AGCATATATAGCACCCCACCACGCCGAGGACGAAGGCGGGAGGAAGGAGG
AAAGGGAGGGCGGGAGGGAGGACCGCTGGTCCTGACGGTGCGGGTGCATG
GAGATGCTCGCGCTCCCACCATCTTTAACGGCTTGCCCGAAGACGGTGCG
ATAACCGCGCATGTGTATTGCAGCCTGGAAGATTTTCTCTATATTTATTC
AGGCCAGGCCACCATCCGAGACGCGATGGCCCTAGGCATAAAAGGTAAAA
TTAAAGTCAGCAATTTTAATCTGAGGGAATGCGGTCGTTTCGCTGCTGCT
TTTGACCTCCGGAGCGAGAAATGGGAACCTCCCTCCCTCCCCCGCCACCC
TCTCCTCCTCCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCCTCCAATTTT
CTCACCGGGGAATGGGCCGGTCTCTCTGCACTCGACTCCCGGCACTCCCT
CCTCCTCCATGCCCCTTCCACACCCTCCACCTTCCCGCCCTCCCTCCCTT
CCTCCCTCCTAACCGTCCTTCACCAAACATCCCACGAGCGTGTGCTCCTC
ATGCAAAAAGGGAAAAACCAAGACCTACACAACTATCTCCCATGGAGAGA
GGGAGAAAGGCGGGAGGGACAAACACACAGCCACAAAAGTACCTTCCTTG
GAGGAAGGGAAGGAGGGGGGGAGGAGGTTGCATCTGCTATAGCAGCGTCT
TTGAGGAGGACCCTAGTAAAGAGGAAGGAGATGTGGTGGGAAGGGAGGAG
GAGGGAGGGAGGGAGGGAGGGGTGGGTATGTGAGATGGACTTCAGTGATT
GGTGGAACCATTCGGCGTCGATGGGGGGCGTGAGAGAGGGAGGGAAGGAG
CGATTGAGGGAGGGAATGAGTGAGGGCCGGTCACGGGGGATCACGCCGGG
GGGAAGTAGGCGGTGAGGG

protein sequence of jgi.p|Nanoce1779_2|342551

>mRNA_10233-protein ID=mRNA_10233-protein|Name=jgi.p|Nanoce1779_2|342551|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MDFFLFSIRPDNTYKGTLSFHFHTPSSLPSSSSSSSLDEKQQQQQQQRHY
YHHHHPEEEHQQPASIYSTPPRRGRRREEGGKGGREGGPLVLTVRVHGDA
RAPTIFNGLPEDGAITAHVYCSLEDFLYIYSGQATIRDAMALGIKGKIKV
SNFNLRECGRFAAAFDLRSEKWEPPSLPRHPLLLLVLPASLPFFLQFSHR
GMGRSLCTRLPALPPPPCPFHTLHLPALPPFLPPNRPSPNIPRACAPHAK
REKPRPTQLSPMERGRKAGGTNTQPQKYLPWRKGRRGGGGCICYSSVFEE
DPSKEEGDVVGREEEGGREGGVGM*

mRNA from alignment at scaffold_50:80239..81815+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Nanoce1779_2|342551|organism=Nannochloropsis oceanica|type=mRNA|length=1577bp|location=Sequence derived from alignment at scaffold_50:80239..81815+ (Nannochloropsis oceanica)
CCGAGACACGCAAGCTACTTGTTAATCCATCCTCCCTGTCTTTCCTCCCC
CATCCTCCCTCCCCCTCTCCTTCCCCTTCTCCCTCCCTGCTCCCAGATCT
ACGAAGTCATGGACTTCTTCCTGTTTAGTATCCGCCCCGACAACACCTAC
AAGGGTACCCTCTCCTTCCATTTCCACACTCCTTCTTCCCTTCCCTCTTC
GTCGTCGTCCTCCTCCTTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGC
GGCATTACTACCATCATCACCACCCTGAGGAGGAGCACCAGCAGCCTGCC
AGCATATATAGCACCCCACCACGCCGAGGACGAAGGCGGGAGGAAGGAGG
AAAGGGAGGGCGGGAGGGAGGACCGCTGGTCCTGACGGTGCGGGTGCATG
GAGATGCTCGCGCTCCCACCATCTTTAACGGCTTGCCCGAAGACGGTGCG
ATAACCGCGCATGTGTATTGCAGCCTGGAAGATTTTCTCTATATTTATTC
AGGTAAGCTGATTGTTTCATATTTATATATAGAGATAGTTGATTTGTATA
CGTACGTATAGATATTGTATATATATATAACATAATTTTGTAATTAAGTA
CAGTAAAGTCAAAAATACTATTCCCCCCCCCCCAACCACTGATTCATCAT
CTCAAATAATTTTATATATAACTGCAATAATACTAAATCAAAGTCAAAAA
CACTATTTCCCCACCCGCCCACCACTTATTCACAGGCCAGGCCACCATCC
GAGACGCGATGGCCCTAGGCATAAAAGGTAAAATTAAAGTCAGCAATTTT
AATCTGAGGGAATGCGGTCGTTTCGCTGCTGCTTTTGACCTCCGGAGCGA
GAAATGGGAAGCCTTCTATCACGCAAGGGAGGGAGAAAGGGAGGGAGGGA
GGGAAGGGACGATAGAATGTAGGGGGAGAGAAGACTTGGGGGGTATGCTG
AAGCGGCATCTGAGCTCGTCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCC
CGCCACCCTCTCCTCCTCCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCCT
CCAATTTTCTCACCGGGGAATGGGCCGGTCTCTCTGCACTCGACTCCCGG
CACTCCCTCCTCCTCCATGCCCCTTCCACACCCTCCACCTTCCCGCCCTC
CCTCCCTTCCTCCCTCCTAACCGTCCTTCACCAAACATCCCACGAGCGTG
TGCTCCTCATGCAAAAAGGGAAAAACCAAGACCTACACAACTATCTCCCA
TGGAGAGAGGGAGAAAGGCGGGAGGGACAAACACACAGCCACAAAAGTAC
CTTCCTTGGAGGAAGGGAAGGAGGGGGGGAGGAGGTTGCATCTGCTATAG
CAGCGTCTTTGAGGAGGACCCTAGTAAAGAGGAAGGAGATGTGGTGGGAA
GGGAGGAGGAGGGAGGGAGGGAGGGAGGGGTGGGTATGTGAGATGGACTT
CAGTGATTGGTGGAACCATTCGGCGTCGATGGGGGGCGTGAGAGAGGGAG
GGAAGGAGCGATTGAGGGAGGGAATGAGTGAGGGCCGGTCACGGGGGATC
ACGCCGGGGGGAAGTAGGCGGTGAGGG

Coding sequence (CDS) from alignment at scaffold_50:80239..81815+

>mRNA_10233 ID=mRNA_10233|Name=jgi.p|Nanoce1779_2|342551|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_50:80239..81815+ (Nannochloropsis oceanica)
ATGGACTTCTTCCTGTTTAGTATCCGCCCCGACAACACCTACAAGGGTAC
CCTCTCCTTCCATTTCCACACTCCTTCTTCCCTTCCCTCTTCGTCGTCGT
CCTCCTCCTTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGCGGCATTAC
TACCATCATCACCACCCTGAGGAGGAGCACCAGCAGCCTGCCAGCATATA
TAGCACCCCACCACGCCGAGGACGAAGGCGGGAGGAAGGAGGAAAGGGAG
GGCGGGAGGGAGGACCGCTGGTCCTGACGGTGCGGGTGCATGGAGATGCT
CGCGCTCCCACCATCTTTAACGGCTTGCCCGAAGACGGTGCGATAACCGC
GCATGTGTATTGCAGCCTGGAAGATTTTCTCTATATTTATTCAGGCCAGG
CCACCATCCGAGACGCGATGGCCCTAGGCATAAAAGGTAAAATTAAAGTC
AGCAATTTTAATCTGAGGGAATGCGGTCGTTTCGCTGCTGCTTTTGACCT
CCGGAGCGAGAAATGGGAACCTCCCTCCCTCCCCCGCCACCCTCTCCTCC
TCCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCCTCCAATTTTCTCACCGG
GGAATGGGCCGGTCTCTCTGCACTCGACTCCCGGCACTCCCTCCTCCTCC
ATGCCCCTTCCACACCCTCCACCTTCCCGCCCTCCCTCCCTTCCTCCCTC
CTAACCGTCCTTCACCAAACATCCCACGAGCGTGTGCTCCTCATGCAAAA
AGGGAAAAACCAAGACCTACACAACTATCTCCCATGGAGAGAGGGAGAAA
GGCGGGAGGGACAAACACACAGCCACAAAAGTACCTTCCTTGGAGGAAGG
GAAGGAGGGGGGGAGGAGGTTGCATCTGCTATAGCAGCGTCTTTGAGGAG
GACCCTAGTAAAGAGGAAGGAGATGTGGTGGGAAGGGAGGAGGAGGGAGG
GAGGGAGGGAGGGGTGGGTATGTGAATGGACTTCTTCCTGTTTAGTATCC
GCCCCGACAACACCTACAAGGGTACCCTCTCCTTCCATTTCCACACTCCT
TCTTCCCTTCCCTCTTCGTCGTCGTCCTCCTCCTTGGACGAGAAGCAGCA
GCAGCAACAGCAGCAGCGGCATTACTACCATCATCACCACCCTGAGGAGG
AGCACCAGCAGCCTGCCAGCATATATAGCACCCCACCACGCCGAGGACGA
AGGCGGGAGGAAGGAGGAAAGGGAGGGCGGGAGGGAGGACCGCTGGTCCT
GACGGTGCGGGTGCATGGAGATGCTCGCGCTCCCACCATCTTTAACGGCT
TGCCCGAAGACGGTGCGATAACCGCGCATGTGTATTGCAGCCTGGAAGAT
TTTCTCTATATTTATTCAGGCCAGGCCACCATCCGAGACGCGATGGCCCT
AGGCATAAAAGGTAAAATTAAAGTCAGCAATTTTAATCTGAGGGAATGCG
GTCGTTTCGCTGCTGCTTTTGACCTCCGGAGCGAGAAATGGGAACCTCCC
TCCCTCCCCCGCCACCCTCTCCTCCTCCTCGTCCTCCCTGCCTCCCTCCC
TTTCTTCCTCCAATTTTCTCACCGGGGAATGGGCCGGTCTCTCTGCACTC
GACTCCCGGCACTCCCTCCTCCTCCATGCCCCTTCCACACCCTCCACCTT
CCCGCCCTCCCTCCCTTCCTCCCTCCTAACCGTCCTTCACCAAACATCCC
ACGAGCGTGTGCTCCTCATGCAAAAAGGGAAAAACCAAGACCTACACAAC
TATCTCCCATGGAGAGAGGGAGAAAGGCGGGAGGGACAAACACACAGCCA
CAAAAGTACCTTCCTTGGAGGAAGGGAAGGAGGGGGGGAGGAGGTTGCAT
CTGCTATAGCAGCGTCTTTGAGGAGGACCCTAGTAAAGAGGAAGGAGATG
TGGTGGGAAGGGAGGAGGAGGGAGGGAGGGAGGGAGGGGTGGGTATGTGA
ATGGACTTCTTCCTGTTTAGTATCCGCCCCGACAACACCTACAAGGGTAC
CCTCTCCTTCCATTTCCACACTCCTTCTTCCCTTCCCTCTTCGTCGTCGT
CCTCCTCCTTGGACGAGAAGCAGCAGCAGCAACAGCAGCAGCGGCATTAC
TACCATCATCACCACCCTGAGGAGGAGCACCAGCAGCCTGCCAGCATATA
TAGCACCCCACCACGCCGAGGACGAAGGCGGGAGGAAGGAGGAAAGGGAG
GGCGGGAGGGAGGACCGCTGGTCCTGACGGTGCGGGTGCATGGAGATGCT
CGCGCTCCCACCATCTTTAACGGCTTGCCCGAAGACGGTGCGATAACCGC
GCATGTGTATTGCAGCCTGGAAGATTTTCTCTATATTTATTCAGGCCAGG
CCACCATCCGAGACGCGATGGCCCTAGGCATAAAAGGTAAAATTAAAGTC
AGCAATTTTAATCTGAGGGAATGCGGTCGTTTCGCTGCTGCTTTTGACCT
CCGGAGCGAGAAATGGGAACCTCCCTCCCTCCCCCGCCACCCTCTCCTCC
TCCTCGTCCTCCCTGCCTCCCTCCCTTTCTTCCTCCAATTTTCTCACCGG
GGAATGGGCCGGTCTCTCTGCACTCGACTCCCGGCACTCCCTCCTCCTCC
ATGCCCCTTCCACACCCTCCACCTTCCCGCCCTCCCTCCCTTCCTCCCTC
CTAACCGTCCTTCACCAAACATCCCACGAGCGTGTGCTCCTCATGCAAAA
AGGGAAAAACCAAGACCTACACAACTATCTCCCATGGAGAGAGGGAGAAA
GGCGGGAGGGACAAACACACAGCCACAAAAGTACCTTCCTTGGAGGAAGG
GAAGGAGGGGGGGAGGAGGTTGCATCTGCTATAGCAGCGTCTTTGAGGAG
GACCCTAGTAAAGAGGAAGGAGATGTGGTGGGAAGGGAGGAGGAGGGAGG
GAGGGAGGGAGGGGTGGGTATGTGA

Synonyms

Publications