jgi.p|Nanoce1779_2|569709, mRNA_10232 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|569709
Unique NamemRNA_10232
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length342
Alignment locationscaffold_50:78122..78506 +

Link to JBrowse

Properties
Property NameValue
TranscriptId569795
TrackFilteredModels2
ProteinId569709
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:78122..78506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569709gene_10232Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|569709mRNA_10232-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10232CDS_10232Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10232 ID=mRNA_10232|Name=jgi.p|Nanoce1779_2|569709|organism=Nannochloropsis oceanica|type=mRNA|length=342bp
ATGGGGATTGAGGGAGGAGGGAACAGAGAGGAGAAGAGGGGGGTAGGCTG
TTCCGATTCTGTCAACATTGTGGGTGCGAAAAAAGTGGGGGAGGGTGAGG
AGGAGGAGGAGGAGGGGGATGACGGGGAAGGGGAAGAGAGGGAGGGGTTG
ATCGAAGCCTTGAGGGGTTTGATGGGCCACGAGACGGTAACGGAGGAGGT
GGAGGAGGAAGGAAAGGAGGGTGTGAAGGTGTTGAGGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAGGCGAGAGAGAAGAGACGGAAAGACATGATGGAG
GGGGCAAAAGAGGGAAAGAGGAAGTACAAAATGTTTCAATAG
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protein sequence of jgi.p|Nanoce1779_2|569709

>mRNA_10232-protein ID=mRNA_10232-protein|Name=jgi.p|Nanoce1779_2|569709|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MGIEGGGNREEKRGVGCSDSVNIVGAKKVGEGEEEEEEGDDGEGEEREGL
IEALRGLMGHETVTEEVEEEGKEGVKVLREEEEKEEEEEAREKRRKDMME
GAKEGKRKYKMFQ*
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mRNA from alignment at scaffold_50:78122..78506+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10232 ID=mRNA_10232|Name=jgi.p|Nanoce1779_2|569709|organism=Nannochloropsis oceanica|type=mRNA|length=385bp|location=Sequence derived from alignment at scaffold_50:78122..78506+ (Nannochloropsis oceanica)
ATGGGGATTGAGGGAGGAGGGAACAGAGAGGAGAAGAGGGGGGTAGGCTG
TTCCGATTCTGTCAACATTGTGGGTGCGAAAAAAGTGGGGGAGGGTGAGG
AGGAGGAGGAGGAGGGGGATGACGGGGAAGGGGAAGAGAGGGAGGGGTTG
ATCGAAGCCTTGAGGGGTTTGATGGGCCACGAGACGGTAACGTGGGGAGA
GGTCCTGCTGTGCTTTGTGCCGGATACTCCACAGGGAGGAGGTGGAGGAG
GAAGGAAAGGAGGGTGTGAAGGTGTTGAGGGAGGAGGAGGAGAAGGAGGA
GGAGGAGGAGGCGAGAGAGAAGAGACGGAAAGACATGATGGAGGGGGCAA
AAGAGGGAAAGAGGAAGTACAAAATGTTTCAATAG
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Coding sequence (CDS) from alignment at scaffold_50:78122..78506+

>mRNA_10232 ID=mRNA_10232|Name=jgi.p|Nanoce1779_2|569709|organism=Nannochloropsis oceanica|type=CDS|length=684bp|location=Sequence derived from alignment at scaffold_50:78122..78506+ (Nannochloropsis oceanica)
ATGGGGATTGAGGGAGGAGGGAACAGAGAGGAGAAGAGGGGGGTAGGCTG
TTCCGATTCTGTCAACATTGTGGGTGCGAAAAAAGTGGGGGAGGGTGAGG
AGGAGGAGGAGGAGGGGGATGACGGGGAAGGGGAAGAGAGGGAGGGGTTG
ATCGAAGCCTTGAGGGGTTTGATGGGCCACGAGACGGTAACGGAGGAGGT
GGAGGAGGAAGGAAAGGAGGGTGTGAAGGTGTTGAGGGAGGAGGAGGAGA
AGGAGGAGGAGGAGGAGGCGAGAGAGAAGAGACGGAAAGACATGATGGAG
GGGGCAAAAGAGGGAAAGAGGAAGTACAAAATGTTTCAATAGATGGGGAT
TGAGGGAGGAGGGAACAGAGAGGAGAAGAGGGGGGTAGGCTGTTCCGATT
CTGTCAACATTGTGGGTGCGAAAAAAGTGGGGGAGGGTGAGGAGGAGGAG
GAGGAGGGGGATGACGGGGAAGGGGAAGAGAGGGAGGGGTTGATCGAAGC
CTTGAGGGGTTTGATGGGCCACGAGACGGTAACGGAGGAGGTGGAGGAGG
AAGGAAAGGAGGGTGTGAAGGTGTTGAGGGAGGAGGAGGAGAAGGAGGAG
GAGGAGGAGGCGAGAGAGAAGAGACGGAAAGACATGATGGAGGGGGCAAA
AGAGGGAAAGAGGAAGTACAAAATGTTTCAATAG
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Synonyms
Publications