jgi.p|Nanoce1779_2|610505, mRNA_10231 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610505
Unique NamemRNA_10231
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length532
Alignment locationscaffold_50:76776..77532 -

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Properties
Property NameValue
TranscriptId610591
TrackFilteredModels2
ProteinId610505
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:76776..77532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610505gene_10231Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610505mRNA_10231-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10231CDS_10231Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10231 ID=mRNA_10231|Name=jgi.p|Nanoce1779_2|610505|organism=Nannochloropsis oceanica|type=mRNA|length=532bp
GCAGCAGCAGCAGGAGCAGCAGCAGCAGCAAGCAAATATGCTAAGGACCG
TCTGTCGGCCTCCAATGCAGCGAGTTCGTTCCTGTGGTGAAGCTCACAAA
AATCCTTCTCCTCTTCCAGCCTTTCCCTGGCTGCTTTTGCGCGTGCTGCT
GCAGCAACAGCTGCAGCTGCTGCTTCTGCAGCTTCCTCTCTTTCCTTCTC
CAGAGACAGACAGCGCGCTTCCAAACCTGTGGTTTTTCTCGCTATGGCTG
CTGCTGTTGCTGCCGCTTCCTCTTTTCCCTCTTTCAGGGACAGACATTCT
GCTCGTAGCTTGTCAATCGTTGCTGCTGCTGTTGCTGCCGCTTCCTCTTT
TCCCTCTTTCAGGGACAGACATTCTGCTCGTAGCTTGTCGATCGTTGCTG
CTGCTGCTGCTGCTGCAGCTCCTCTTGCCTGTGCCACCGCATGCCCTTTC
TCTTTCTCCAGCATAAAACATTCGGCCTCGAGCGATGCAATACTTGCTGC
TGCTGCTGCTGTTGCTGCTGCTGCTTTCTCCG
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protein sequence of jgi.p|Nanoce1779_2|610505

>mRNA_10231-protein ID=mRNA_10231-protein|Name=jgi.p|Nanoce1779_2|610505|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MLRTVCRPPMQRVRSCGEAHKNPSPLPAFPWLLLRVLLQQQLQLLLLQLP
LFPSPETDSALPNLWFFSLWLLLLLPLPLFPLSGTDILLVACQSLLLLLL
PLPLFPLSGTDILLVACRSLLLLLLLQLLLPVPPHALSLSPA*
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mRNA from alignment at scaffold_50:76776..77532-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10231 ID=mRNA_10231|Name=jgi.p|Nanoce1779_2|610505|organism=Nannochloropsis oceanica|type=mRNA|length=757bp|location=Sequence derived from alignment at scaffold_50:76776..77532- (Nannochloropsis oceanica)
GCAGCAGCAGCAGGAGCAGCAGCAGCAGCAAGCAAATATGCTAAGGACCG
TCTGTCGGCCTCCAATGCAGCGAGTTCGTTCCTGTGGTGAAGCTCACAAA
AATCCTTCTCCTCTTCCAGCCTTTCCCTGGCTGCTTTTGCGCGTGCTGCT
GCAGCAACAGCTGCAGCTGCTGCTTCTGCAGCTTCCTCTCTTTCCTTCTC
CAGAGACAGACAGCGCGCTTCCAAACCTGTGGTTTTTCTCGCTATGGCTG
CTGCTGTTGCTGCCGCTTCCTCTTTTCCCTCTTTCAGGGACAGACATTCT
GCTCGTAGCTTGTCAATCGTTGCTGCTGCTGTTGCTGCCGCTTCCTCTTT
TCCCTCTTTCAGGGACAGACATTCTGCTCGTAGCTTGTCGATCGTTGCTG
CTGCTGTTGCTGCCGCTTCCTCTTTTCCCTCTTTCAGGGACAGACATTCT
GCTCGTAGCTTGTCAATCGTTGCTGCTGCTGTTGCTGCCGCTTCCTCTTT
TCCCTCTTTCAGGGACAGACATTCTGCTCTTAGCTTGTCAATCGTTGCTG
CTGCTGTTGCTGCCGCTTCCTCTTTTCCCTCTTTCAGGGATAGACATTCT
GCTCTTAGCTTGTCGATCGTTGCTGCTGCTGCTGCTGCTGCAGCTCCTCT
TGCCTGTGCCACCGCATGCCCTTTCTCTTTCTCCAGCATAAAACATTCGG
CCTCGAGCGATGCAATACTTGCTGCTGCTGCTGCTGTTGCTGCTGCTGCT
TTCTCCG
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Coding sequence (CDS) from alignment at scaffold_50:76776..77532-

>mRNA_10231 ID=mRNA_10231|Name=jgi.p|Nanoce1779_2|610505|organism=Nannochloropsis oceanica|type=CDS|length=858bp|location=Sequence derived from alignment at scaffold_50:76776..77532- (Nannochloropsis oceanica)
TGCTGCTGCTGCAGCTCCTCTTGCCTGTGCCACCGCATGCCCTTTCTCTT
TCTCCAGCATAAATGCTAAGGACCGTCTGTCGGCCTCCAATGCAGCGAGT
TCGTTCCTGTGGTGAAGCTCACAAAAATCCTTCTCCTCTTCCAGCCTTTC
CCTGGCTGCTTTTGCGCGTGCTGCTGCAGCAACAGCTGCAGCTGCTGCTT
CTGCAGCTTCCTCTCTTTCCTTCTCCAGAGACAGACAGCGCGCTTCCAAA
CCTGTGGTTTTTCTCGCTATGGCTGCTGCTGTTGCTGCCGCTTCCTCTTT
TCCCTCTTTCAGGGACAGACATTCTGCTCGTAGCTTGTCAATCGTTGCTG
CTGCTGTTGCTGCCGCTTCCTCTTTTCCCTCTTTCAGGGACAGACATTCT
GCTCGTAGCTTGTCGATCGTTGCTGCTGCTGCTGCTGCTGCAGCTCCTCT
TGCCTGTGCCACCGCATGCCCTTTCTCTTTCTCCAGCATAAATGCTAAGG
ACCGTCTGTCGGCCTCCAATGCAGCGAGTTCGTTCCTGTGGTGAAGCTCA
CAAAAATCCTTCTCCTCTTCCAGCCTTTCCCTGGCTGCTTTTGCGCGTGC
TGCTGCAGCAACAGCTGCAGCTGCTGCTTCTGCAGCTTCCTCTCTTTCCT
TCTCCAGAGACAGACAGCGCGCTTCCAAACCTGTGGTTTTTCTCGCTATG
GCTGCTGCTGTTGCTGCCGCTTCCTCTTTTCCCTCTTTCAGGGACAGACA
TTCTGCTCGTAGCTTGTCAATCGTTGCTGCTGCTGTTGCTGCCGCTTCCT
CTTTTCCCTCTTTCAGGGACAGACATTCTGCTCGTAGCTTGTCGATCGTT
GCTGCTGC
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Synonyms
Publications