jgi.p|Nanoce1779_2|610501, mRNA_10230 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610501
Unique NamemRNA_10230
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length300
Alignment locationscaffold_50:75515..75814 -

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Properties
Property NameValue
TranscriptId610587
TrackFilteredModels2
ProteinId610501
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:75515..75814 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610501gene_10230Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610501mRNA_10230-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10230CDS_10230Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10230 ID=mRNA_10230|Name=jgi.p|Nanoce1779_2|610501|organism=Nannochloropsis oceanica|type=mRNA|length=300bp
AATTCAAACCAAAAACGAATGGATTGGTGGCGCGGCGTCATTTTCCTTGG
TTGCCTCCTCTGCGCTCTCAACTACTCCCCTCACCTTACCTCGCTGGTGT
TGCCTGGCTTTGGCTGCGCCTTTGACGACATTGTCACATATGAATTATTT
TTAATGGAACTAGTCGGGGACTCTTTCGCGCTGGCGTGCGTTTCCCCGCT
CATACTGATTGATCTCCCGCGTCATACACTCATGAATCCCTGGATACCTT
TCCCTCCCCACCTCTCCTCCCCATCCTAAAGCAGCAGTAGCAGTAGCAGT
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protein sequence of jgi.p|Nanoce1779_2|610501

>mRNA_10230-protein ID=mRNA_10230-protein|Name=jgi.p|Nanoce1779_2|610501|organism=Nannochloropsis oceanica|type=polypeptide|length=87bp
MDWWRGVIFLGCLLCALNYSPHLTSLVLPGFGCAFDDIVTYELFLMELVG
DSFALACVSPLILIDLPRHTLMNPWIPFPPHLSSPS*
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mRNA from alignment at scaffold_50:75515..75814-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10230 ID=mRNA_10230|Name=jgi.p|Nanoce1779_2|610501|organism=Nannochloropsis oceanica|type=mRNA|length=300bp|location=Sequence derived from alignment at scaffold_50:75515..75814- (Nannochloropsis oceanica)
AATTCAAACCAAAAACGAATGGATTGGTGGCGCGGCGTCATTTTCCTTGG
TTGCCTCCTCTGCGCTCTCAACTACTCCCCTCACCTTACCTCGCTGGTGT
TGCCTGGCTTTGGCTGCGCCTTTGACGACATTGTCACATATGAATTATTT
TTAATGGAACTAGTCGGGGACTCTTTCGCGCTGGCGTGCGTTTCCCCGCT
CATACTGATTGATCTCCCGCGTCATACACTCATGAATCCCTGGATACCTT
TCCCTCCCCACCTCTCCTCCCCATCCTAAAGCAGCAGTAGCAGTAGCAGT
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Coding sequence (CDS) from alignment at scaffold_50:75515..75814-

>mRNA_10230 ID=mRNA_10230|Name=jgi.p|Nanoce1779_2|610501|organism=Nannochloropsis oceanica|type=CDS|length=261bp|location=Sequence derived from alignment at scaffold_50:75515..75814- (Nannochloropsis oceanica)
ATGGATTGGTGGCGCGGCGTCATTTTCCTTGGTTGCCTCCTCTGCGCTCT
CAACTACTCCCCTCACCTTACCTCGCTGGTGTTGCCTGGCTTTGGCTGCG
CCTTTGACGACATTGTCACATATGAATTATTTTTAATGGAACTAGTCGGG
GACTCTTTCGCGCTGGCGTGCGTTTCCCCGCTCATACTGATTGATCTCCC
GCGTCATACACTCATGAATCCCTGGATACCTTTCCCTCCCCACCTCTCCT
CCCCATCCTAA
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Synonyms
Publications