jgi.p|Nanoce1779_2|610486, mRNA_10224 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610486
Unique NamemRNA_10224
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length429
Alignment locationscaffold_50:59283..60328 +

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Properties
Property NameValue
TranscriptId610572
TrackFilteredModels2
ProteinId610486
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:59283..60328 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610486gene_10224Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610486mRNA_10224-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10224CDS_10224Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10224 ID=mRNA_10224|Name=jgi.p|Nanoce1779_2|610486|organism=Nannochloropsis oceanica|type=mRNA|length=429bp
ACAGCCATGTCCTCTTCGGTCGATGAGCCTTTGGACCTGATCCGTCTGTC
CCTAGATGAAAGGGTTTATGTCAAGTGCCGCGGGGAGAGGGAGCTGCGAG
GAAAGCTGCATGCGTTTGACAGACATCTTAATATGATACTGGGAGACGTG
GAGGAGACAGTGACCACGCCGGAAATCGACGAGGAAACCGACGAAGAAAT
AATCAGGACCTCGCGTAGGACTGTGGAGATGCTATTTGTCCGGGGGGATG
TCGTCATTCTGGTGTCTCCGCCCTTGCGCACTGGTTGAAGATAAAAAAGA
AAGAAAAAAGAAAAACATAGATAAGAGCGTGGGAAAGAAGGAGAAGGAGC
GAGGGGGGGAGGAAAGGAGGGAGGGAAGGCGACCGCATGATAAGTAAAAC
AAAGCAGAACACAGAAAGCAGAAAACGGA
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protein sequence of jgi.p|Nanoce1779_2|610486

>mRNA_10224-protein ID=mRNA_10224-protein|Name=jgi.p|Nanoce1779_2|610486|organism=Nannochloropsis oceanica|type=polypeptide|length=94bp
MSSSVDEPLDLIRLSLDERVYVKCRGERELRGKLHAFDRHLNMILGDVEE
TVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRTG*
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mRNA from alignment at scaffold_50:59283..60328+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10224 ID=mRNA_10224|Name=jgi.p|Nanoce1779_2|610486|organism=Nannochloropsis oceanica|type=mRNA|length=1046bp|location=Sequence derived from alignment at scaffold_50:59283..60328+ (Nannochloropsis oceanica)
ACAGCCATGTCCTCTTCGGTCGATGAGCCTTTGGACCTGATCCGTCTGTC
CCTAGATGAAAGGGTTTATGTCAAGTGCCGCGGGGAGAGGGAGCTGCGAG
GAAAGCTGCATGTAAGTGGGAGGGAGGGAAGAAAGGAGGGAGAGATGGAT
GTAGGGTTGAATATGAAGGGCGATGAAGAGATCCATGTCCCTGTGTGGAG
GGAGTGTAGAAGGTGTAGTGAGTAGGGCAACAGGGGACCTCGCCTCTTTT
TTTTCCGCTTACCACAGGGCCCTCGTGCTCACCGCTCTTTCTCCTTGCAT
CCATCCCTCTCTTCCTCCTCCCCCCCCTCTCTTTTCTCCTTCCCCACAGG
CGTTTGACAGACATCTTAATATGATACTGGGAGACGTGGAGGAGACAGTG
ACCACGCCGGAAATCGACGAGGAAACCGACGAAGAAATAATCAGGGTAAG
TGTCCCTTTCCCTCCCCTCCTCCCTCCCTCCTTCCCTCCCTTCCATCTAT
TCAACCCTGATTTTGGATGATAGAGGTGGAAGAGTCCCAGGATAATGTCA
CCAGATATATAGATACCGACAATGACACAGACAAGGCGACTCTGACGGAG
GGAGGGAGGGATGGAGGGAGAGAGGGAGGGAGTGGTATGTACGACAAATA
TCGGGAGAGAGATCGTGACCATACGCGAAATCATGCCCATGAAACAAATT
AGAAGATTTTGAGGATGCACTTTATTCTTTCCCTCCCTCCCTCCCTTCCT
CCCTCCCTCCCTCCTTTGGTTCATTCTCCCTTTTCACCATCTTCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCAGACCTCGCGTAGGACTGTGGAGATGCT
ATTTGTCCGGGGGGATGTCGTCATTCTGGTGTCTCCGCCCTTGCGCACTG
GTTGAAGATAAAAAAGAAAGAAAAAAGAAAAACATAGATAAGAGCGTGGG
AAAGAAGGAGAAGGAGCGAGGGGGGGAGGAAAGGAGGGAGGGAAGGCGAC
CGCATGATAAGTAAAACAAAGCAGAACACAGAAAGCAGAAAACGGA
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Coding sequence (CDS) from alignment at scaffold_50:59283..60328+

>mRNA_10224 ID=mRNA_10224|Name=jgi.p|Nanoce1779_2|610486|organism=Nannochloropsis oceanica|type=CDS|length=846bp|location=Sequence derived from alignment at scaffold_50:59283..60328+ (Nannochloropsis oceanica)
ATGTCCTCTTCGGTCGATGAGCCTTTGGACCTGATCCGTCTGTCCCTAGA
TGAAAGGGTTTATGTCAAGTGCCGCGGGGAGAGGGAGCTGCGAGGAAAGC
TGCATGCGTTTGACAGACATCTTAATATGATACTGGGAGACGTGGAGGAG
ACAGTGACCACGCCGGAAATCGACGAGGAAACCGACGAAGAAATAATCAG
GACCTCGCGTAGGACTGTGGAGATGCTATTTGTCCGGGGGGATGTCGTCA
TTCTGGTGTCTCCGCCCTTGCGCACTGGTTGAATGTCCTCTTCGGTCGAT
GAGCCTTTGGACCTGATCCGTCTGTCCCTAGATGAAAGGGTTTATGTCAA
GTGCCGCGGGGAGAGGGAGCTGCGAGGAAAGCTGCATGCGTTTGACAGAC
ATCTTAATATGATACTGGGAGACGTGGAGGAGACAGTGACCACGCCGGAA
ATCGACGAGGAAACCGACGAAGAAATAATCAGGACCTCGCGTAGGACTGT
GGAGATGCTATTTGTCCGGGGGGATGTCGTCATTCTGGTGTCTCCGCCCT
TGCGCACTGGTTGAATGTCCTCTTCGGTCGATGAGCCTTTGGACCTGATC
CGTCTGTCCCTAGATGAAAGGGTTTATGTCAAGTGCCGCGGGGAGAGGGA
GCTGCGAGGAAAGCTGCATGCGTTTGACAGACATCTTAATATGATACTGG
GAGACGTGGAGGAGACAGTGACCACGCCGGAAATCGACGAGGAAACCGAC
GAAGAAATAATCAGGACCTCGCGTAGGACTGTGGAGATGCTATTTGTCCG
GGGGGATGTCGTCATTCTGGTGTCTCCGCCCTTGCGCACTGGTTGA
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Synonyms
Publications