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Properties
Property Name | Value |
TranscriptId | 342000 |
Track | FilteredModels2 |
ProteinId | 341914 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_50 | supercontig | scaffold_50:50779..53580 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_10222 ID=mRNA_10222|Name=jgi.p|Nanoce1779_2|341914|organism=Nannochloropsis oceanica|type=mRNA|length=1218bp AACCGATAAGGACATCCTTGCCCAAGCCGAGCCTCACATTGCGCGTTTAC GTGGTGCTACGGTAGTGGTAAAGTATGGGGGGCACGCCATGGAAAACGAT GTGTTGAAGGCCAATTTCGCAAGTGACATTGCCTTGCTCAAGCAGTTGGG AATCAATATTGTGGTGGTCCATGGAGGAGGACCGCAGATTGCGGCCATGC TCAAACGCCTAAATGTCGAGAGCTCCTTCATCGATGGCCTGCGCGTGACT GACAAGGCCACGCTGGAGGTTGCCGAAATGGTGTTATGCGGTTTGGTCAA CAAGGAAATCGCTTCGTTAATTAAGAAGAGCGGTGCCAGGGCCATCGGAA TTGCCGGAAGGGACGATGGATTGCTCGTGGGTATCAAGGTCAGGGAGGAG CTGGGGTATGTGGGCGAGCCCACGGGCGTGAATACAGCGATTATTACCGA CCTCCTCGCTGCGGGGATTACCCCAGTGGTGGCGCCCATCGGAGTTTCGG AAGAAGGCGAGACGTTAAATTTTAATGCTGACACCGCCGCGGGAAAAATT GCCGGTGCTCTCAAGGCGAAGCGGCTTTTGTTACTCACGGACGTGGCGGG GGTATTGAACAAGGAGAAGGTGCTCTTTCCCCGACTGAAGCTGAAGCAGG TGGAGGAGCTGAAGCAGGACGGCACGGTCACAGGCGGGATGATTCCTAAG GTGGAGATGGCCAAATCAGCCGTTCTTGAAGGCGTAGAAGGAGCGGTCAT TCTGGATGGGCGGGTTCCACACGCGGTATTACTGCAACTGCTCTCGGACA GAGCTGTGGGCACTTTGGTATCGGACGCAGAGGAGCAGTAAAAACGGAAA CTGAGAGAAATGAAAGAGGAAAAAGCGATGAAGAGTCAGAAAAGGATTTT CCCTACCGTTTACACAAGGAAATGAGGTAAAGACAGGAGAAAAAAGAAGC CAGATGGCAAGGAGAGCCATGTTCGCCGTTCTTTTATTTCATGCTCCTCT CTCTACACACAATCCTCATGAGATCTTGGACGTGCCGCATACATCACCTC TCTCTCTCCCCCCCCTTTCACTGATAACTACAAAATGAAGTGTGTGTGTG TGTGTGTGTGAGAGTGAGTGTGGGTGTGTGTGTGTTACAAAAAGAGAAAG AAGAAGAAGAGAAAGAAAAAGCGGAGGATGATTGTCGTGATCATCGTACC GATACAGAGGAGAGCATC back to topprotein sequence of jgi.p|Nanoce1779_2|341914 >mRNA_10222-protein ID=mRNA_10222-protein|Name=jgi.p|Nanoce1779_2|341914|organism=Nannochloropsis oceanica|type=polypeptide|length=251bp MENDVLKANFASDIALLKQLGINIVVVHGGGPQIAAMLKRLNVESSFIDG LRVTDKATLEVAEMVLCGLVNKEIASLIKKSGARAIGIAGRDDGLLVGIK VREELGYVGEPTGVNTAIITDLLAAGITPVVAPIGVSEEGETLNFNADTA AGKIAGALKAKRLLLLTDVAGVLNKEKVLFPRLKLKQVEELKQDGTVTGG MIPKVEMAKSAVLEGVEGAVILDGRVPHAVLLQLLSDRAVGTLVSDAEEQ * back to topmRNA from alignment at scaffold_50:50779..53580+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_10222 ID=mRNA_10222|Name=jgi.p|Nanoce1779_2|341914|organism=Nannochloropsis oceanica|type=mRNA|length=2802bp|location=Sequence derived from alignment at scaffold_50:50779..53580+ (Nannochloropsis oceanica) AACCGATAAGGACATCCTTGCCCAAGCCGAGCCTCACATTGCGCGTTTAC
GTGGTGCTACGGTAGTGGTAAAGTATGGGGGGCACGCCATGGAAAACGAT
GTGTTGAAGGCCAATTTCGCAAGTGACATTGCCTTGCTCAAGCAGGTAGG
TCCTCCTTCCCTAACCCTAACCCTATCCCTCCCTCTATCCCTCCCTCTAT
CCCTCCCTCCCTCCCTCCCTTCTTCCCTCCCTCCTTCCCTCCCTTCTTTC
CTCCTTTCCTCCCTCCCTCCTTTCCGCCCTCCCTATCTTGTCTGCCCTTT
TCCTTGCCTACCATTCTTTATGGGGACGTTATTACAGCCATTACAGTCAT
TACAGTCATTACAGTCATTACGGTCATTACAGTCTTTACAGTCATTACAG
TCATTACGGTCATCCTCAGCACACCGAGATCTGAGCATGCTCCTCCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCTTCCCTCCTTCCATTCC
CCACAGTTGGGAATCAATATTGTGGTGGTCCATGGAGGAGGACCGCAGAT
TGCGGCCATGCTCAAACGCCTAAATGTCGAGAGCTCCTTCATCGATGGCC
TGCGCGTGACTGACAAGGTAGGGAGGGAAGGAGGGAGGGAGGGAGGAGAG
GAAGGAAGGGACAGAGGAAGGAAACTCCACATCATACGCTTTCGAGCGAC
TCGTCGTCCATTCCGTCACACATGGCGCCTTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCC
ACGCTGGAGGTTGCCGAAATGGTGTTATGCGGTTTGGTCAACAAGGAAAT
CGCTTCGTTAATTAAGAAGAGCGGTGCCAGGGCCATCGGAATTGCCGGAA
GGGACGATGGATTGCTCGTGGGTATCAAGGTGAGGGAGAGAGGAAAGGAA
GGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAAAGAGAA
AAAAAGGTTGGTTGGTTGGCCTGTCAGGTGGCGCCAAGGTCGAGATGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGGGATGCATGAGAGA
CTCTCGCGATCTTCACCGTCATTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCTTCCCTCCTTCACACCCTCCCTCCCTCCCTTCCTT
TCTTCAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCACGGGCGTGA
ATACAGCGATTATTACCGACCTCCTCGCTGCGGGGATTACCCCAGTGGTG
GCGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTTAATGCTGA
CACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCGGCTTTTGT
TACTCACGGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGCTCTTTCCC
CGACTGAAGCTGAAGCAGGTCTGGAGGGAGGGAGGGAGGAAAGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAACGAGGGAGGCAGGAAGAG
AAAGTCACTTCGACCATTTCCTATTTCTTCTTTTTCCTTCTTATTTTTTG
TATCTCTCTCGGTGTGTGTGTGTGAAAACAAACAAACAGGTGGAGGAGCT
GAAGCAGGACGGCACGGTCACAGGCGGGATGATTCCTAAGGTAGGACAAA
AGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGGAAGGAAGC
GAGGATGAGGGTGGGTATTTATCTAATATTCTGCAATATTATGTACGTAT
ATATATATATATATATACACACATATTCTCTTTCTCTCTCTCTCTCTCTC
TCTCTCTTTCTCTTTCTCTTTCTTTCTTTCTCTCTCTCCCCACCCGCCGC
TTCTTGTCGCACACTTGCCAAACCTTTTTTTTTTATTTTTTTAAAATTGT
TTTGACGCCGACGTCACCCTCATCCTCCCCTCCCTCTTTCATTCCCTTCC
CTTTCCCCCACACTCCGTCAGGTGGAGATGGCCAAATCAGCCGTTCTTGA
AGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCACACGCGGTAT
TACTGCAACTGCTCTCGGACAGGTAGGGGGAGAGGGAGGAGGGGAAGGAG
GAAAGGAGGGAAGAGGGAGGGAAGGATCAAACGTATCATGTCAATAACCA
ATACTTCCCCCTCGTATCACTCATTTTCTCATTTTTCCTTTCCCTTCAAT
AGAGCTGTGGGCACTTTGGTATCGGACGCAGAGGAGTAAAAAGGAAGGGA
GGGAAGGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGCGAAACGAGCG
AGACTATCAAGGTTTTGGCCGTAGGGAGGGTAGGAGGGAGCGAGGAAGGG
AGGGAAAGCTGTGTGTAGGCAGTAAAAACGGAAACTGAGAGAAATGAAAG
AGGAAAAAGCGATGAAGAGTCAGAAAAGGATTTTCCCTACCGTTTACACA
AGGAAATGAGGTAAAGACAGGAGAAAAAAGAAGCCAGATGGCAAGGAGAG
CCATGTTCGCCGTTCTTTTATTTCATGCTCCTCTCTCTACACACAATCCT
CATGAGATCTTGGACGTGCCGCATACATCACCTCTCTCTCTCCCCCCCCT
TTCACTGATAACTACAAAATGAAGTGTGTGTGTGTGTGTGTGTGAGAGTG
AGTGTGGGTGTGTGTGTGTTACAAAAAGAGAAAGAAGAAGAAGAGAAAGA
AAAAGCGGAGGATGATTGTCGTGATCATCGTACCGATACAGAGGAGAGCA
TC back to topCoding sequence (CDS) from alignment at scaffold_50:50779..53580+ >mRNA_10222 ID=mRNA_10222|Name=jgi.p|Nanoce1779_2|341914|organism=Nannochloropsis oceanica|type=CDS|length=6024bp|location=Sequence derived from alignment at scaffold_50:50779..53580+ (Nannochloropsis oceanica) ATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAGTGACATTGCCTTGCT CAAGCAGTTGGGAATCAATATTGTGGTGGTCCATGGAGGAGGACCGCAGA TTGCGGCCATGCTCAAACGCCTAAATGTCGAGAGCTCCTTCATCGATGGC CTGCGCGTGACTGACAAGGCCACGCTGGAGGTTGCCGAAATGGTGTTATG CGGTTTGGTCAACAAGGAAATCGCTTCGTTAATTAAGAAGAGCGGTGCCA GGGCCATCGGAATTGCCGGAAGGGACGATGGATTGCTCGTGGGTATCAAG GTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCACGGGCGTGAATACAGC GATTATTACCGACCTCCTCGCTGCGGGGATTACCCCAGTGGTGGCGCCCA TCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTTAATGCTGACACCGCC GCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCGGCTTTTGTTACTCAC GGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGCTCTTTCCCCGACTGA AGCTGAAGCAGGTGGAGGAGCTGAAGCAGGACGGCACGGTCACAGGCGGG ATGATTCCTAAGGTGGAGATGGCCAAATCAGCCGTTCTTGAAGGCGTAGA AGGAGCGGTCATTCTGGATGGGCGGGTTCCACACGCGGTATTACTGCAAC TGCTCTCGGACAGAGCTGTGGGCACTTTGGTATCGGACGCAGAGGAGCAG TAAATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAGTGACATTGCCTT GCTCAAGCAGTTGGGAATCAATATTGTGGTGGTCCATGGAGGAGGACCGC AGATTGCGGCCATGCTCAAACGCCTAAATGTCGAGAGCTCCTTCATCGAT GGCCTGCGCGTGACTGACAAGGCCACGCTGGAGGTTGCCGAAATGGTGTT ATGCGGTTTGGTCAACAAGGAAATCGCTTCGTTAATTAAGAAGAGCGGTG CCAGGGCCATCGGAATTGCCGGAAGGGACGATGGATTGCTCGTGGGTATC AAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCACGGGCGTGAATAC AGCGATTATTACCGACCTCCTCGCTGCGGGGATTACCCCAGTGGTGGCGC CCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTTAATGCTGACACC GCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCGGCTTTTGTTACT CACGGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGCTCTTTCCCCGAC TGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAGGACGGCACGGTCACAGGC GGGATGATTCCTAAGGTGGAGATGGCCAAATCAGCCGTTCTTGAAGGCGT AGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCACACGCGGTATTACTGC AACTGCTCTCGGACAGAGCTGTGGGCACTTTGGTATCGGACGCAGAGGAG CAGTAAATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAGTGACATTGC CTTGCTCAAGCAGTTGGGAATCAATATTGTGGTGGTCCATGGAGGAGGAC CGCAGATTGCGGCCATGCTCAAACGCCTAAATGTCGAGAGCTCCTTCATC GATGGCCTGCGCGTGACTGACAAGGCCACGCTGGAGGTTGCCGAAATGGT GTTATGCGGTTTGGTCAACAAGGAAATCGCTTCGTTAATTAAGAAGAGCG GTGCCAGGGCCATCGGAATTGCCGGAAGGGACGATGGATTGCTCGTGGGT ATCAAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCACGGGCGTGAA TACAGCGATTATTACCGACCTCCTCGCTGCGGGGATTACCCCAGTGGTGG CGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTTAATGCTGAC ACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCGGCTTTTGTT ACTCACGGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGCTCTTTCCCC GACTGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAGGACGGCACGGTCACA GGCGGGATGATTCCTAAGGTGGAGATGGCCAAATCAGCCGTTCTTGAAGG CGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCACACGCGGTATTAC TGCAACTGCTCTCGGACAGAGCTGTGGGCACTTTGGTATCGGACGCAGAG GAGCAGTAAATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAGTGACAT TGCCTTGCTCAAGCAGTTGGGAATCAATATTGTGGTGGTCCATGGAGGAG GACCGCAGATTGCGGCCATGCTCAAACGCCTAAATGTCGAGAGCTCCTTC ATCGATGGCCTGCGCGTGACTGACAAGGCCACGCTGGAGGTTGCCGAAAT GGTGTTATGCGGTTTGGTCAACAAGGAAATCGCTTCGTTAATTAAGAAGA GCGGTGCCAGGGCCATCGGAATTGCCGGAAGGGACGATGGATTGCTCGTG GGTATCAAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCACGGGCGT GAATACAGCGATTATTACCGACCTCCTCGCTGCGGGGATTACCCCAGTGG TGGCGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTTAATGCT GACACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCGGCTTTT GTTACTCACGGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGCTCTTTC CCCGACTGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAGGACGGCACGGTC ACAGGCGGGATGATTCCTAAGGTGGAGATGGCCAAATCAGCCGTTCTTGA AGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCACACGCGGTAT TACTGCAACTGCTCTCGGACAGAGCTGTGGGCACTTTGGTATCGGACGCA GAGGAGCAGTAAATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAGTGA CATTGCCTTGCTCAAGCAGTTGGGAATCAATATTGTGGTGGTCCATGGAG GAGGACCGCAGATTGCGGCCATGCTCAAACGCCTAAATGTCGAGAGCTCC TTCATCGATGGCCTGCGCGTGACTGACAAGGCCACGCTGGAGGTTGCCGA AATGGTGTTATGCGGTTTGGTCAACAAGGAAATCGCTTCGTTAATTAAGA AGAGCGGTGCCAGGGCCATCGGAATTGCCGGAAGGGACGATGGATTGCTC GTGGGTATCAAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCACGGG CGTGAATACAGCGATTATTACCGACCTCCTCGCTGCGGGGATTACCCCAG TGGTGGCGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTTAAT GCTGACACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCGGCT TTTGTTACTCACGGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGCTCT TTCCCCGACTGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAGGACGGCACG GTCACAGGCGGGATGATTCCTAAGGTGGAGATGGCCAAATCAGCCGTTCT TGAAGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCACACGCGG TATTACTGCAACTGCTCTCGGACAGAGCTGTGGGCACTTTGGTATCGGAC GCAGAGGAGCAGTAAATGGAAAACGATGTGTTGAAGGCCAATTTCGCAAG TGACATTGCCTTGCTCAAGCAGTTGGGAATCAATATTGTGGTGGTCCATG GAGGAGGACCGCAGATTGCGGCCATGCTCAAACGCCTAAATGTCGAGAGC TCCTTCATCGATGGCCTGCGCGTGACTGACAAGGCCACGCTGGAGGTTGC CGAAATGGTGTTATGCGGTTTGGTCAACAAGGAAATCGCTTCGTTAATTA AGAAGAGCGGTGCCAGGGCCATCGGAATTGCCGGAAGGGACGATGGATTG CTCGTGGGTATCAAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCCCAC GGGCGTGAATACAGCGATTATTACCGACCTCCTCGCTGCGGGGATTACCC CAGTGGTGGCGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAATTTT AATGCTGACACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAAGCG GCTTTTGTTACTCACGGACGTGGCGGGGGTATTGAACAAGGAGAAGGTGC TCTTTCCCCGACTGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAGGACGGC ACGGTCACAGGCGGGATGATTCCTAAGGTGGAGATGGCCAAATCAGCCGT TCTTGAAGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCACACG CGGTATTACTGCAACTGCTCTCGGACAGAGCTGTGGGCACTTTGGTATCG GACGCAGAGGAGCAGTAAATGGAAAACGATGTGTTGAAGGCCAATTTCGC AAGTGACATTGCCTTGCTCAAGCAGTTGGGAATCAATATTGTGGTGGTCC ATGGAGGAGGACCGCAGATTGCGGCCATGCTCAAACGCCTAAATGTCGAG AGCTCCTTCATCGATGGCCTGCGCGTGACTGACAAGGCCACGCTGGAGGT TGCCGAAATGGTGTTATGCGGTTTGGTCAACAAGGAAATCGCTTCGTTAA TTAAGAAGAGCGGTGCCAGGGCCATCGGAATTGCCGGAAGGGACGATGGA TTGCTCGTGGGTATCAAGGTCAGGGAGGAGCTGGGGTATGTGGGCGAGCC CACGGGCGTGAATACAGCGATTATTACCGACCTCCTCGCTGCGGGGATTA CCCCAGTGGTGGCGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTAAAT TTTAATGCTGACACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGCGAA GCGGCTTTTGTTACTCACGGACGTGGCGGGGGTATTGAACAAGGAGAAGG TGCTCTTTCCCCGACTGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAGGAC GGCACGGTCACAGGCGGGATGATTCCTAAGGTGGAGATGGCCAAATCAGC CGTTCTTGAAGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTCCAC ACGCGGTATTACTGCAACTGCTCTCGGACAGAGCTGTGGGCACTTTGGTA TCGGACGCAGAGGAGCAGTAAATGGAAAACGATGTGTTGAAGGCCAATTT CGCAAGTGACATTGCCTTGCTCAAGCAGTTGGGAATCAATATTGTGGTGG TCCATGGAGGAGGACCGCAGATTGCGGCCATGCTCAAACGCCTAAATGTC GAGAGCTCCTTCATCGATGGCCTGCGCGTGACTGACAAGGCCACGCTGGA GGTTGCCGAAATGGTGTTATGCGGTTTGGTCAACAAGGAAATCGCTTCGT TAATTAAGAAGAGCGGTGCCAGGGCCATCGGAATTGCCGGAAGGGACGAT GGATTGCTCGTGGGTATCAAGGTCAGGGAGGAGCTGGGGTATGTGGGCGA GCCCACGGGCGTGAATACAGCGATTATTACCGACCTCCTCGCTGCGGGGA TTACCCCAGTGGTGGCGCCCATCGGAGTTTCGGAAGAAGGCGAGACGTTA AATTTTAATGCTGACACCGCCGCGGGAAAAATTGCCGGTGCTCTCAAGGC GAAGCGGCTTTTGTTACTCACGGACGTGGCGGGGGTATTGAACAAGGAGA AGGTGCTCTTTCCCCGACTGAAGCTGAAGCAGGTGGAGGAGCTGAAGCAG GACGGCACGGTCACAGGCGGGATGATTCCTAAGGTGGAGATGGCCAAATC AGCCGTTCTTGAAGGCGTAGAAGGAGCGGTCATTCTGGATGGGCGGGTTC CACACGCGGTATTACTGCAACTGCTCTCGGACAGAGCTGTGGGCACTTTG GTATCGGACGCAGAGGAGCAGTAA back to top
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