jgi.p|Nanoce1779_2|674666, mRNA_10219 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674666
Unique NamemRNA_10219
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length553
Alignment locationscaffold_50:40069..42193 +

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Properties
Property NameValue
TranscriptId674752
TrackFilteredModels2
ProteinId674666
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:40069..42193 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674666gene_10219Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674666mRNA_10219-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10219CDS_10219Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10219 ID=mRNA_10219|Name=jgi.p|Nanoce1779_2|674666|organism=Nannochloropsis oceanica|type=mRNA|length=553bp
AGCGAGTGGCGTCTTCGCTGCAAGCAAGTCGGCTCGCTCGGATGGATGGA
CTTGGCTGGCAGCAGTGACAAAGCACGACAAGCAAATGCCGTACAAGGAG
AGCATAGCCACAACTGTCAGTGGAGTCCTGGATATCATTGCATTGCTTCT
CGTCCATGCTTTACACCTGAGCCCAGCGTCGCCCAAGTACGTCCATAGCA
GCAGCAGTATCAACAGCAACAGCAAAAGCAGCAGCGTCACTACCCTGACA
GGAAGGAGCAGCAGTAGGAGCCGGAGCAGCAGCAGCAGCAGAAGCAGCAG
CAATTACAGCAGCAGCGAGCGCGCCCTGCGCATCATCCACTTCGCCGAGG
CCGATATTCCCGAGGAGAATCCCAAAAAGCCCGACGAGCCCGCCTAGGCA
GCCAGCGAGGAGAGCAGCCTCGGCCCCCTCGCAAAAAAAAGGAAAAAAAT
ATTGAGAAGGAGAATAAAACAAAGAAAGACAATAGTGTATAAGTAGAAAA
AGGTGCCTGCCAAAGCTATGACTGAAAGCTGCTTCTGTTGATCTTTTCTT
GCT
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protein sequence of jgi.p|Nanoce1779_2|674666

>mRNA_10219-protein ID=mRNA_10219-protein|Name=jgi.p|Nanoce1779_2|674666|organism=Nannochloropsis oceanica|type=polypeptide|length=104bp
MPYKESIATTVSGVLDIIALLLVHALHLSPASPKYVHSSSSINSNSKSSS
VTTLTGRSSSRSRSSSSSRSSSNYSSSERALRIIHFAEADIPEENPKKPD
EPA*
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mRNA from alignment at scaffold_50:40069..42193+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10219 ID=mRNA_10219|Name=jgi.p|Nanoce1779_2|674666|organism=Nannochloropsis oceanica|type=mRNA|length=2125bp|location=Sequence derived from alignment at scaffold_50:40069..42193+ (Nannochloropsis oceanica)
AGCGAGTGGCGTCTTCGCTGCAAGCAAGTCGGCTCGCTCGGATGGATGGA
CTTGGCTGGCAGCAGTGACAAAGCACGACAAGCAAATGCCGTACAAGGAG
AGCATAGCCACAACTGTCAGTGGTACTGGAAATGAGAACAGTCTGGATTG
CCTGGCTTTGCTGGGCATCTCGACCTCCCCCTTTGCCTCCTGCCACGACC
CAGTCACCTACGGCTCTAGGAGTCCTGGATATCATTGCATTGCTTCTCGT
CCATGCTTTACACCTGAGCCCAGCGTCGCCCAAGTACGTCCATAGCAGCA
GCAGTATCAACAGCAACAGCAAAAGCAGCAGCGTCACTACCCTGACAGGA
AGGTCTATGACAGAGGCGAGACACGGTAAAAGGGAGAGAGGGAGCGAGGG
AGGCCACGAATGTGAATATGTGTATGTGTGTGTGTTTGTGTGTGTGTGTA
TGTCGCAGGGATGTCGTACACTCAAATATATATGTTAGACAACTGAAACA
CGTTTATTGAAGACAACTTCCTCAAACGTATGCTGAGCGACGCATTTTCT
CCAATTCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTTGTGTGCGAGCCTCACCCTCTGCTCGGGGGGAGGG
GAAACGAGGAGGAGGGAGGGAGGGAGGGAGAGGCCCCAATAGTGACCGAG
ACTTAATTTATCTTCTTTATTCTTACACTAACAGAGATACGGAGGCACAC
AGAGTGATTAAAATTGCACAAGCGTCTCTTGGAGCCTCCCTCTCTCCGAT
GGCACCAAAAGTAAGCACGACTCTTTCCTTCTCCCCTCCCTCCTTCCCTC
CCTTGCTTCCTCGTGACTTGTTCTCTCTTGTTCTCTATGATTATTATATT
ATTAGCTCTAGCTGACTCTCATTTTTACGATTGAGTGGTTGAGGAGAAAA
TTTAATATAGGACTACGATGATATGAGAGAACCGCAGTAGATCCATGTGT
CCCTCCTCCCTCCCTCCCTTCCTTTTCCACTTCTTTCCATTTCTTGCGAA
AGGGGCAGACAAGATGGAAAAGAAAAAAGAGGAGGAAAAATTGATGGAGG
GTGGTGACTGATTTATTCTATTTCTCTCTTCTTTTACACTACAAGGAGCA
GCAGTAGGAGCCGGAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTACAGC
AGCAGGTGGAGGAAAACAATTAAAAAGGTGCGTTTGGAAGAAGAAAAGTA
AAGCGAGAGCAAGGCAAGGAGGGAAGGAAGGAGGGACGGCAAGGGGCAGT
ATGTGCCGGGTCTCAGTGACGAAAAACGTGTTAAACAGAGCGTTTAGCTT
GGTGAGATAAACACAACCTCCTACTCATTCCGAGGATACCCGGACAGACA
CATACATATATCTGTTTTTTGGTCTACTTAGATACAGATATAGATATGGG
TACAGATATCTATCCATATCTATCTATCTATCTACCTATTTATCTATCTA
TCTATCTATCTATCTATCCATCTATTCATCTATCCATATCTATCCATCTA
TTCATCAACAATGTCGAGGAGGAGGAAAGGAGGAAAAAATGGAAGGAAGG
AGGGAAGGAAGGAGGGAAAGAGGAATGGAGGAGGGACAGACAAGTCACTT
AAATTGCTTCAAACGAATACAGGGCAACGACAAGAGCGCCGCCATTCCCC
CCTCCTCTTCCTCCTCCTCCTCCTCCATCACCACCACCACATCTTCCCTC
TTCCTCCTCTTCCTCCTCCTCTTCCTCCTCCTTCTGCCACAGCAGGAGAT
GGTAGTGCTCTCCTACGCTGGCGGCCATGGCGGCAAGCGAGCGCGCCCTG
CGCATCATCCACTTCGCCGAGGCCGATATTCCCGAGGAGAATCCCAAAAA
GCCCGACGAGCCCGCCTAGGCAGCCAGCGAGGAGAGCAGCCTCGGCCCCC
TCGCAAAAAAAAGGAAAAAAATATTGAGAAGGAGAATAAAACAAAGAAAG
ACAATAGTGTATAAGTAGAAAAAGGTGCCTGCCAAAGCTATGACTGAAAG
CTGCTTCTGTTGATCTTTTCTTGCT
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Coding sequence (CDS) from alignment at scaffold_50:40069..42193+

>mRNA_10219 ID=mRNA_10219|Name=jgi.p|Nanoce1779_2|674666|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_50:40069..42193+ (Nannochloropsis oceanica)
ATGCCGTACAAGGAGAGCATAGCCACAACTGTCAGTGGAGTCCTGGATAT
CATTGCATTGCTTCTCGTCCATGCTTTACACCTGAGCCCAGCGTCGCCCA
AGTACGTCCATAGCAGCAGCAGTATCAACAGCAACAGCAAAAGCAGCAGC
GTCACTACCCTGACAGGAAGGAGCAGCAGTAGGAGCCGGAGCAGCAGCAG
CAGCAGAAGCAGCAGCAATTACAGCAGCAGCGAGCGCGCCCTGCGCATCA
TCCACTTCGCCGAGGCCGATATTCCCGAGGAGAATCCCAAAAAGCCCGAC
GAGCCCGCCTAGATGCCGTACAAGGAGAGCATAGCCACAACTGTCAGTGG
AGTCCTGGATATCATTGCATTGCTTCTCGTCCATGCTTTACACCTGAGCC
CAGCGTCGCCCAAGTACGTCCATAGCAGCAGCAGTATCAACAGCAACAGC
AAAAGCAGCAGCGTCACTACCCTGACAGGAAGGAGCAGCAGTAGGAGCCG
GAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTACAGCAGCAGCGAGCGCG
CCCTGCGCATCATCCACTTCGCCGAGGCCGATATTCCCGAGGAGAATCCC
AAAAAGCCCGACGAGCCCGCCTAGATGCCGTACAAGGAGAGCATAGCCAC
AACTGTCAGTGGAGTCCTGGATATCATTGCATTGCTTCTCGTCCATGCTT
TACACCTGAGCCCAGCGTCGCCCAAGTACGTCCATAGCAGCAGCAGTATC
AACAGCAACAGCAAAAGCAGCAGCGTCACTACCCTGACAGGAAGGAGCAG
CAGTAGGAGCCGGAGCAGCAGCAGCAGCAGAAGCAGCAGCAATTACAGCA
GCAGCGAGCGCGCCCTGCGCATCATCCACTTCGCCGAGGCCGATATTCCC
GAGGAGAATCCCAAAAAGCCCGACGAGCCCGCCTAGATGCCGTACAAGGA
GAGCATAGCCACAACTGTCAGTGGAGTCCTGGATATCATTGCATTGCTTC
TCGTCCATGCTTTACACCTGAGCCCAGCGTCGCCCAAGTACGTCCATAGC
AGCAGCAGTATCAACAGCAACAGCAAAAGCAGCAGCGTCACTACCCTGAC
AGGAAGGAGCAGCAGTAGGAGCCGGAGCAGCAGCAGCAGCAGAAGCAGCA
GCAATTACAGCAGCAGCGAGCGCGCCCTGCGCATCATCCACTTCGCCGAG
GCCGATATTCCCGAGGAGAATCCCAAAAAGCCCGACGAGCCCGCCTAG
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Synonyms
Publications