jgi.p|Nanoce1779_2|633974, mRNA_10212 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633974
Unique NamemRNA_10212
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length451
Alignment locationscaffold_50:23970..24536 -

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Properties
Property NameValue
TranscriptId634060
TrackFilteredModels2
ProteinId633974
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:23970..24536 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633974gene_10212Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633974mRNA_10212-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10212CDS_10212Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10212 ID=mRNA_10212|Name=jgi.p|Nanoce1779_2|633974|organism=Nannochloropsis oceanica|type=mRNA|length=451bp
GGAGGTCCTTCCCCCGAAACACTTCCTGACTATTGCCCCCGCCATTACCT
ACGCCATGGGCGCTATAGTAGCCTTGACACTGGCTTTTCTCCTTTTCAAT
GTGGCAGCGTTGCTTTATTATCGAAAGCACAAGATCATTCGTTTCTCTCA
AGGAGATATTTTGCAAGCCATGACACTCTCTAGCATCGTTGCTGTAGGGA
GCCTTCCTCTTGCCGCCGTTCCCTCTACGCCATCGTGCCTTCTCCGTCCT
TGGCTACAAATAATTCCGCTCAACTTTCTCTTCGGGCTCCTCTTCGGCAA
GACCTGGCGGATCCACCGCTTACTCAACAACAAGCAGCTCAAGGCAATTA
AAATTAGGCAATCTGCCGTCTTCTTCGTCGCCTTTCTTCTCACTCTTCCT
GAAATCGCCATCCACGGCCTTTACTTCCTCTTGGCCCCTCCCACTTTGTC
G
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protein sequence of jgi.p|Nanoce1779_2|633974

>mRNA_10212-protein ID=mRNA_10212-protein|Name=jgi.p|Nanoce1779_2|633974|organism=Nannochloropsis oceanica|type=polypeptide|length=132bp
MGAIVALTLAFLLFNVAALLYYRKHKIIRFSQGDILQAMTLSSIVAVGSL
PLAAVPSTPSCLLRPWLQIIPLNFLFGLLFGKTWRIHRLLNNKQLKAIKI
RQSAVFFVAFLLTLPEIAIHGLYFLLAPPTLS
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mRNA from alignment at scaffold_50:23970..24536-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10212 ID=mRNA_10212|Name=jgi.p|Nanoce1779_2|633974|organism=Nannochloropsis oceanica|type=mRNA|length=567bp|location=Sequence derived from alignment at scaffold_50:23970..24536- (Nannochloropsis oceanica)
GGAGGTCCTTCCCCCGAAACACTTCCTGACTATTGCCCCCGCCATTACCT
ACGCCATGGGCGCTATAGTAGCCTTGACACTGGCTTTTCTCCTTTTCAAT
GTGGCAGCGTTGCTTTATTATCGAAAGCACAAGATCATTCGTTTCTCTCA
AGGAGATATTTTGCAAGGTAAGAAAGAATGGAAGGAGGTAGACAAGAATA
AAGGGATATTCAGGGTGGAGCTGCTTTAGGGGCGCATGTACGGCATCGCA
ACGAATGAGTTGCTCATCTTCTTCTCCCGATAGCCATGACACTCTCTAGC
ATCGTTGCTGTAGGGAGCCTTCCTCTTGCCGCCGTTCCCTCTACGCCATC
GTGCCTTCTCCGTCCTTGGCTACAAATAATTCCGCTCAACTTTCTCTTCG
GGCTCCTCTTCGGCAAGACCTGGCGGATCCACCGCTTACTCAACAACAAG
CAGCTCAAGGCAATTAAAATTAGGCAATCTGCCGTCTTCTTCGTCGCCTT
TCTTCTCACTCTTCCTGAAATCGCCATCCACGGCCTTTACTTCCTCTTGG
CCCCTCCCACTTTGTCG
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Coding sequence (CDS) from alignment at scaffold_50:23970..24536-

>mRNA_10212 ID=mRNA_10212|Name=jgi.p|Nanoce1779_2|633974|organism=Nannochloropsis oceanica|type=CDS|length=792bp|location=Sequence derived from alignment at scaffold_50:23970..24536- (Nannochloropsis oceanica)
CCATGACACTCTCTAGCATCGTTGCTGTAGGGAGCCTTCCTCTTGCCGCC
GTTCCCTCTACGCCATCGTGCCTTCTCCGTCCTTGGCTACAAATAATTCC
GCTCAACTTTCTCTTCGGGCTCCTCTTCGGCAAGACCTGGCGGATCCACC
GCTTACTCAACAACAAGCAGCTCAAGGCAATTAAAATTAGGCAATCTGCC
GTCTTCTTCGTCGCCTTTCTTCTCACTCTTCCTGAAATCGCCATCCACGG
CCTTTACTTCCTCTTGGCCCCTCCCACTTTGTCGATGGGCGCTATAGTAG
CCTTGACACTGGCTTTTCTCCTTTTCAATGTGGCAGCGTTGCTTTATTAT
CGAAAGCACAAGATCATTCGTTTCTCTCAAGGAGATATTTTGCAAGCCAT
GACACTCTCTAGCATCGTTGCTGTAGGGAGCCTTCCTCTTGCCGCCGTTC
CCTCTACGCCATCGTGCCTTCTCCGTCCTTGGCTACAAATAATTCCGCTC
AACTTTCTCTTCGGGCTCCTCTTCGGCAAGACCTGGCGGATCCACCGCTT
ACTCAACAACAAGCAGCTCAAGGCAATTAAAATTAGGCAATCTGCCGTCT
TCTTCGTCGCCTTTCTTCTCACTCTTCCTGAAATCGCCATCCACGGCCTT
TACTTCCTCTTGGCCCCTCCCACTTTGTCGATGGGCGCTATAGTAGCCTT
GACACTGGCTTTTCTCCTTTTCAATGTGGCAGCGTTGCTTTATTATCGAA
AGCACAAGATCATTCGTTTCTCTCAAGGAGATATTTTGCAAG
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Synonyms
Publications