jgi.p|Nanoce1779_2|674661, mRNA_10210 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674661
Unique NamemRNA_10210
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length843
Alignment locationscaffold_50:21348..22607 +

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Properties
Property NameValue
TranscriptId674747
TrackFilteredModels2
ProteinId674661
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:21348..22607 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674661gene_10210Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674661mRNA_10210-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10210CDS_10210Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10210 ID=mRNA_10210|Name=jgi.p|Nanoce1779_2|674661|organism=Nannochloropsis oceanica|type=mRNA|length=843bp
TGGGTGTCCGTAATGCTAGACCAATCTAGCCAGTCTTGACTTTTTATTTG
GGGCCACTGAGGTGTGTAGGTGTGGATGATTGGTCCGGGTGGCGGGCGAG
CAAGCAATGCCGTTCCTCTCCTCTCCTCCTGATCATCATCCCCTTTCCCC
CCTCCTCTTCCTCCACACCAACGCACAGCCGCAGCAGCCAGCCACTGCAG
AGAAGCGGCAGCACAAACACAGACTTTAAGGGCAATAGGAAAGGACGACG
CAGCCCCACCATCACCTTTACGCGTTATTGGCCCACACCAGTCCACCCCC
ACATCTACATCCACACTACGCAAGATGAGTCGTCGCCTGCTCAAACACGG
CGCCGAGGCATTCAAACCACATTTTGTCGATGGACGCTGGCAGCGGCCCC
TCATTTCTAAGCGCGTGGCAGCACGCCTGAGGAAAGAAGCTCTGGCCAAT
GGGACCTATGGAAGTCTTCAAGATACCGCCTCAACTGCCGGCAGTGTCAG
CAGCAGCAGCAGCAGGGATGGAGGGCGGGAGGGAGGGAGGGTAGGAGGCT
GGGATCCGGCTTGGGACCGAGTGGAGGCGCCACGGGTGTTAAGGCCAGCA
AAACTGCACAAACGAGAGAGAACTAGAGAAGAGAGGTTTCAAAAGATTGA
GACGGCCATGGCAGGAATGGATGCGAAGGTGGCCCAGCACAAAGAGAGCT
TGAAGTCCCTCAAGCCGAAAGTGGGAATCGAGTCATTGTATAAGAAGATT
GTGACAGAAGCACAGAAACGACGATAGGAGACGAAGAGCAAAGGAGGGGG
AAATGGAATTTGTGAGACAAAAAGGAAATATGCTCGAATCGTT
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protein sequence of jgi.p|Nanoce1779_2|674661

>mRNA_10210-protein ID=mRNA_10210-protein|Name=jgi.p|Nanoce1779_2|674661|organism=Nannochloropsis oceanica|type=polypeptide|length=151bp
MSRRLLKHGAEAFKPHFVDGRWQRPLISKRVAARLRKEALANGTYGSLQD
TASTAGSVSSSSSRDGGREGGRVGGWDPAWDRVEAPRVLRPAKLHKRERT
REERFQKIETAMAGMDAKVAQHKESLKSLKPKVGIESLYKKIVTEAQKRR
*
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mRNA from alignment at scaffold_50:21348..22607+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10210 ID=mRNA_10210|Name=jgi.p|Nanoce1779_2|674661|organism=Nannochloropsis oceanica|type=mRNA|length=1260bp|location=Sequence derived from alignment at scaffold_50:21348..22607+ (Nannochloropsis oceanica)
TGGGTGTCCGTAATGCTAGACCAATCTAGCCAGTCTTGACTTTTTATTTG
GGGCCACTGAGGTGTGTAGGTGTGGATGATTGGTCCGGGTGGCGGGCGAG
CAAGCAATGCCGTTCCTCTCCTCTCCTCCTGATCATCATCCCCTTTCCCC
CCTCCTCTTCCTCCACACCAACGCACAGCCGCAGCAGCCAGCCACTGCAG
AGAAGCGGCAGCACAAACACAGACTTTAAGGGCAATAGGAAAGGACGACG
CAGCCCCACCATCACCTTTACGCGTTATTGGCCCACACCAGTCCACCCCC
ACATCTACATCCACACTACGCAAGATGAGTCGTCGCCTGCTCAAACACGG
CGCCGAGGCATTCAAACCACATTTTGTCGATGGACGCTGGCAGCGGCCCC
TCATTTCTAAGCGCGTGGTACGTCTCCTCTCCATTCTCGCCCACTTTCCC
TCACTCCCTCCTTCGGAAGGGATCTATCCATGTCTGTGCAGCCCTTTTGA
GCCCCCCTCTCCATCTTATTCTTTCATCCTTCCTCTCTCCCATCTTCTCT
GCCTCTTTCCATGTCAAGCATCCTAGTTCCAAGTCCAAATGGCGTCCTCT
CTCTTTTTTCTGTGACAAGCATTCCTTGATCTCTCCCTCCCTCTCTCCCT
CTCCTCTCCCAACTCACCCATCCCCAATTATCACTTTCCCTCACAGGCAG
CACGCCTGAGGAAAGAAGCTCTGGCCAATGGGACCTATGGAAGTCTTCAA
GATACCGCCTCAACTGCCGGCAGTGTCAGCAGCAGCAGCAGCAGGGATGG
AGGGCGGGAGGGAGGGAGGGTAGGAGGCTGGGATCCGGCTTGGGACCGAG
TGGAGGCGCCACGGGTGTTAAGGCCAGCAAAACTGCACAAACGAGAGAGA
ACTAGAGAAGAGAGGTACGGGAGAGAGAGTTAAGGGGAGGGTGTTGTTGA
ATACTGAAGGATACAACTAGTCAGGCGCCTCAAGTCATGTTAGTGAACCT
CTCATCCACCCTCCCTTCCCTTTCTTTTTCTCTTCCTCCTTCTCTTCCTC
AGGTTTCAAAAGATTGAGACGGCCATGGCAGGAATGGATGCGAAGGTGGC
CCAGCACAAAGAGAGCTTGAAGTCCCTCAAGCCGAAAGTGGGAATCGAGT
CATTGTATAAGAAGATTGTGACAGAAGCACAGAAACGACGATAGGAGACG
AAGAGCAAAGGAGGGGGAAATGGAATTTGTGAGACAAAAAGGAAATATGC
TCGAATCGTT
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Coding sequence (CDS) from alignment at scaffold_50:21348..22607+

>mRNA_10210 ID=mRNA_10210|Name=jgi.p|Nanoce1779_2|674661|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_50:21348..22607+ (Nannochloropsis oceanica)
ATGAGTCGTCGCCTGCTCAAACACGGCGCCGAGGCATTCAAACCACATTT
TGTCGATGGACGCTGGCAGCGGCCCCTCATTTCTAAGCGCGTGGCAGCAC
GCCTGAGGAAAGAAGCTCTGGCCAATGGGACCTATGGAAGTCTTCAAGAT
ACCGCCTCAACTGCCGGCAGTGTCAGCAGCAGCAGCAGCAGGGATGGAGG
GCGGGAGGGAGGGAGGGTAGGAGGCTGGGATCCGGCTTGGGACCGAGTGG
AGGCGCCACGGGTGTTAAGGCCAGCAAAACTGCACAAACGAGAGAGAACT
AGAGAAGAGAGGTTTCAAAAGATTGAGACGGCCATGGCAGGAATGGATGC
GAAGGTGGCCCAGCACAAAGAGAGCTTGAAGTCCCTCAAGCCGAAAGTGG
GAATCGAGTCATTGTATAAGAAGATTGTGACAGAAGCACAGAAACGACGA
TAGATGAGTCGTCGCCTGCTCAAACACGGCGCCGAGGCATTCAAACCACA
TTTTGTCGATGGACGCTGGCAGCGGCCCCTCATTTCTAAGCGCGTGGCAG
CACGCCTGAGGAAAGAAGCTCTGGCCAATGGGACCTATGGAAGTCTTCAA
GATACCGCCTCAACTGCCGGCAGTGTCAGCAGCAGCAGCAGCAGGGATGG
AGGGCGGGAGGGAGGGAGGGTAGGAGGCTGGGATCCGGCTTGGGACCGAG
TGGAGGCGCCACGGGTGTTAAGGCCAGCAAAACTGCACAAACGAGAGAGA
ACTAGAGAAGAGAGGTTTCAAAAGATTGAGACGGCCATGGCAGGAATGGA
TGCGAAGGTGGCCCAGCACAAAGAGAGCTTGAAGTCCCTCAAGCCGAAAG
TGGGAATCGAGTCATTGTATAAGAAGATTGTGACAGAAGCACAGAAACGA
CGATAGATGAGTCGTCGCCTGCTCAAACACGGCGCCGAGGCATTCAAACC
ACATTTTGTCGATGGACGCTGGCAGCGGCCCCTCATTTCTAAGCGCGTGG
CAGCACGCCTGAGGAAAGAAGCTCTGGCCAATGGGACCTATGGAAGTCTT
CAAGATACCGCCTCAACTGCCGGCAGTGTCAGCAGCAGCAGCAGCAGGGA
TGGAGGGCGGGAGGGAGGGAGGGTAGGAGGCTGGGATCCGGCTTGGGACC
GAGTGGAGGCGCCACGGGTGTTAAGGCCAGCAAAACTGCACAAACGAGAG
AGAACTAGAGAAGAGAGGTTTCAAAAGATTGAGACGGCCATGGCAGGAAT
GGATGCGAAGGTGGCCCAGCACAAAGAGAGCTTGAAGTCCCTCAAGCCGA
AAGTGGGAATCGAGTCATTGTATAAGAAGATTGTGACAGAAGCACAGAAA
CGACGATAG
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Synonyms
Publications