jgi.p|Nanoce1779_2|674655, mRNA_10205 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|674655
Unique NamemRNA_10205
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length824
Alignment locationscaffold_50:684..2132 -

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Properties
Property NameValue
TranscriptId674741
TrackFilteredModels2
ProteinId674655
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_50supercontigscaffold_50:684..2132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674655gene_10205Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|674655mRNA_10205-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10205CDS_10205Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10205 ID=mRNA_10205|Name=jgi.p|Nanoce1779_2|674655|organism=Nannochloropsis oceanica|type=mRNA|length=824bp
AGCTTGGAGGCTGCATGCCTCGAGCCGCCTTCCTCCCGACCCGACACGCC
ATCATCTTCCTCTCCTTCCTCCCCCTCTTCCTCCTCCTCATCCCCCTCGT
CCCCGTACCCTGCGTTTCCTCCTTCTCCTTTATCAACCCCATTTCTATTG
GGAGTAGCAGCAGAAGCGTCAGTGGCACCAGCAGGCGTAGCAGCGTTAGC
AGAACCAGCAGCGAGAAGAGCATCAGCAGCAGCAGTACAGGCATGTCCTC
TTCCTTCCTTCCCTGCCGACCATCGTTCATCGAGCCCGAGGAATTACTAG
CTCTCCTCCAGGCACAACGACAGGGAGTTAAATCTCCCACAATAAAGATC
GTAGACGTGCGTGACGACGACTTTGAAGTGGCCAAACTGCCGGGGGCGAT
AAACGTGCCAAGTGAAGAGTGGCATGAAGACGAGCGGGTGGATACCTTGG
TACAGGAACTCAAGGACTATGACCTGGTGATCTTCCATTGCATGCTCTCT
CAAGTCCGTGGTCCCAAGTGCAGCAACCGCTTTCGAGCTCGTCTCTCAGT
CTTAAAAGTAGACGAAGAGGAAGAGGAGGAGGAAGAGGGAAGGAGGGAAG
GAGGGAAAGAGGGAGGGAGGCCTCGGGTGTTCGTTTTGAGAGGGGGCTTT
CAGGGATGGTATGCGAGGTATAGAAAAGAGATAGGCATGGTGGTGCCATG
CGAGGATGAGTAGGGAGAAAGGGAGGGAGGGAACGCTGGAGAGAGGGGGA
AGGGACCATATAGAGGAGGGCAACGAGCAGTAATAAAGAAAAGAATGGGG
AATAAACATTCTAAAAAGCAATAC
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protein sequence of jgi.p|Nanoce1779_2|674655

>mRNA_10205-protein ID=mRNA_10205-protein|Name=jgi.p|Nanoce1779_2|674655|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MPRAAFLPTRHAIIFLSFLPLFLLLIPLVPVPCVSSFSFINPISIGSSSR
SVSGTSRRSSVSRTSSEKSISSSSTGMSSSFLPCRPSFIEPEELLALLQA
QRQGVKSPTIKIVDVRDDDFEVAKLPGAINVPSEEWHEDERVDTLVQELK
DYDLVIFHCMLSQVRGPKCSNRFRARLSVLKVDEEEEEEEEGRREGGKEG
GRPRVFVLRGGFQGWYARYRKEIGMVVPCEDE*
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mRNA from alignment at scaffold_50:684..2132-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10205 ID=mRNA_10205|Name=jgi.p|Nanoce1779_2|674655|organism=Nannochloropsis oceanica|type=mRNA|length=1449bp|location=Sequence derived from alignment at scaffold_50:684..2132- (Nannochloropsis oceanica)
AGCTTGGAGGCTGCATGCCTCGAGCCGCCTTCCTCCCGACCCGACACGCC
ATCATCTTCCTCTCCTTCCTCCCCCTCTTCCTCCTCCTCATCCCCCTCGT
CCCCGTACCCTGCGTTTCCTCCTTCTCCTTTATCAACCCCATTTCTATTG
GGAGTAGCAGCAGAAGCGTCAGTGGCACCAGCAGGCGTAGCAGCGTTAGC
AGAACCAGCAGCGAGAAGAGCATCAGCAGCAGCAGTACAGGCATGTCCTC
TTCCTTCCTTCCCTGCCGACCATCGTTCATCGAGCCCGAGGAATTACTAG
CTCTCCTCCAGGCACAACGACAGGGAGTTAAATCTCCCACAATAAAGATC
GTAGACGTGCGTGACGACGACTTTGAAGGTTAGTCGAAACATGGAAGAGG
GAGAGGGGGAGGGATCGCAAGAGGGAGGGAGGGAGGGTGGGTGGGTGGGC
TACTTGTCTTGGCATAATTTATTTCGATTCGTAGAATCACGAGAACAACA
CAACGAAAGGGAAGGGTAAACAGGAGAGAGCTGGGGAGGGAGGGAGGGAG
GACTTGCACTCAAATATAGCCTATTCTTATACACATGCCATAAATCGATA
CAGTGGCCAAACTGCCGGGGGCGATAAACGTGCCAAGTGAAGGTGAGGTA
GCGAGAGGGAGGGAGGGTGGGTGGGAGGGAGGAAGGGGGGGGGGGCGAAG
GGAGGGAGAATTATGTGTAATAGAAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAATAGTATCAATATGTGTTATCATATGTACATGAAAATACACGTTTTG
GGGGCGGGAACCCTATCATGGTGACGACAGAGTGGCATGAAGACGAGCGG
GTGGATACCTTGGTACAGGAACTCAAGGTAAGCCCTCCTTCTCTCCCTCC
CCATCTTCCCTCCCTCCCTCTCTCCTCTTCCTCTTTCTCTCTTTCCCTGC
CTTCGTTTCTCAGGACCATGACCCGACCTAATAAAGTTCCATTGCATGTC
CTCTCACGGCCTTGACCCTCACTGCAGCTCTTTCTCCCTCTACCCTCGCT
CCCTTTGTTACTCCCTCCCTCCCTCCCTCCCTCCCTCAGGACTATGACCT
GGTGATCTTCCATTGCATGCTCTCTCAAGTCCGTGGTCCCAAGTGCAGCA
ACCGCTTTCGAGCTCGTCTCTCAGTCTTAAAAGTAGACGAAGAGGAAGAG
GAGGAGGAAGAGGGAAGGAGGGAAGGAGGGAAAGAGGGAGGGAGGCCTCG
GGTGTTCGTTTTGAGAGGGGGCTTTCAGGGATGGTATGCGAGGTATAGAA
AAGAGATAGGCATGGTGGTGCCATGCGAGGATGAGTAGGGAGAAAGGGAG
GGAGGGAACGCTGGAGAGAGGGGGAAGGGACCATATAGAGGAGGGCAACG
AGCAGTAATAAAGAAAAGAATGGGGAATAAACATTCTAAAAAGCAATAC
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Coding sequence (CDS) from alignment at scaffold_50:684..2132-

>mRNA_10205 ID=mRNA_10205|Name=jgi.p|Nanoce1779_2|674655|organism=Nannochloropsis oceanica|type=CDS|length=2796bp|location=Sequence derived from alignment at scaffold_50:684..2132- (Nannochloropsis oceanica)
GACTATGACCTGGTGATCTTCCATTGCATGCTCTCTCAAGTCCGTGGTCC
CAAGTGCAGCAACCGCTTTCGAGCTCGTCTCTCAGTCTTAAAAGTAGACG
AAGAGGAAGAGGAGGAGGAAGAGGGAAGGAGGGAAGGAGGGAAAGAGGGA
GGGAGGCCTCGGGTGTTCGTTTTGAGAGGGGGCTTTCAGGGATGGTATGC
GAGGTATAGAAAAGAGATAGGCATGGTGGTGCCATGCGAGGATGAGTAGA
GTGGCATGAAGACGAGCGGGTGGATACCTTGGTACAGGAACTCAAGTGGC
CAAACTGCCGGGGGCGATAAACGTGCCAAGTGAAGATGCCTCGAGCCGCC
TTCCTCCCGACCCGACACGCCATCATCTTCCTCTCCTTCCTCCCCCTCTT
CCTCCTCCTCATCCCCCTCGTCCCCGTACCCTGCGTTTCCTCCTTCTCCT
TTATCAACCCCATTTCTATTGGGAGTAGCAGCAGAAGCGTCAGTGGCACC
AGCAGGCGTAGCAGCGTTAGCAGAACCAGCAGCGAGAAGAGCATCAGCAG
CAGCAGTACAGGCATGTCCTCTTCCTTCCTTCCCTGCCGACCATCGTTCA
TCGAGCCCGAGGAATTACTAGCTCTCCTCCAGGCACAACGACAGGGAGTT
AAATCTCCCACAATAAAGATCGTAGACGTGCGTGACGACGACTTTGAAGG
ACTATGACCTGGTGATCTTCCATTGCATGCTCTCTCAAGTCCGTGGTCCC
AAGTGCAGCAACCGCTTTCGAGCTCGTCTCTCAGTCTTAAAAGTAGACGA
AGAGGAAGAGGAGGAGGAAGAGGGAAGGAGGGAAGGAGGGAAAGAGGGAG
GGAGGCCTCGGGTGTTCGTTTTGAGAGGGGGCTTTCAGGGATGGTATGCG
AGGTATAGAAAAGAGATAGGCATGGTGGTGCCATGCGAGGATGAGTAGAG
TGGCATGAAGACGAGCGGGTGGATACCTTGGTACAGGAACTCAAGTGGCC
AAACTGCCGGGGGCGATAAACGTGCCAAGTGAAGATGCCTCGAGCCGCCT
TCCTCCCGACCCGACACGCCATCATCTTCCTCTCCTTCCTCCCCCTCTTC
CTCCTCCTCATCCCCCTCGTCCCCGTACCCTGCGTTTCCTCCTTCTCCTT
TATCAACCCCATTTCTATTGGGAGTAGCAGCAGAAGCGTCAGTGGCACCA
GCAGGCGTAGCAGCGTTAGCAGAACCAGCAGCGAGAAGAGCATCAGCAGC
AGCAGTACAGGCATGTCCTCTTCCTTCCTTCCCTGCCGACCATCGTTCAT
CGAGCCCGAGGAATTACTAGCTCTCCTCCAGGCACAACGACAGGGAGTTA
AATCTCCCACAATAAAGATCGTAGACGTGCGTGACGACGACTTTGAAGGA
CTATGACCTGGTGATCTTCCATTGCATGCTCTCTCAAGTCCGTGGTCCCA
AGTGCAGCAACCGCTTTCGAGCTCGTCTCTCAGTCTTAAAAGTAGACGAA
GAGGAAGAGGAGGAGGAAGAGGGAAGGAGGGAAGGAGGGAAAGAGGGAGG
GAGGCCTCGGGTGTTCGTTTTGAGAGGGGGCTTTCAGGGATGGTATGCGA
GGTATAGAAAAGAGATAGGCATGGTGGTGCCATGCGAGGATGAGTAGAGT
GGCATGAAGACGAGCGGGTGGATACCTTGGTACAGGAACTCAAGTGGCCA
AACTGCCGGGGGCGATAAACGTGCCAAGTGAAGATGCCTCGAGCCGCCTT
CCTCCCGACCCGACACGCCATCATCTTCCTCTCCTTCCTCCCCCTCTTCC
TCCTCCTCATCCCCCTCGTCCCCGTACCCTGCGTTTCCTCCTTCTCCTTT
ATCAACCCCATTTCTATTGGGAGTAGCAGCAGAAGCGTCAGTGGCACCAG
CAGGCGTAGCAGCGTTAGCAGAACCAGCAGCGAGAAGAGCATCAGCAGCA
GCAGTACAGGCATGTCCTCTTCCTTCCTTCCCTGCCGACCATCGTTCATC
GAGCCCGAGGAATTACTAGCTCTCCTCCAGGCACAACGACAGGGAGTTAA
ATCTCCCACAATAAAGATCGTAGACGTGCGTGACGACGACTTTGAAGGAC
TATGACCTGGTGATCTTCCATTGCATGCTCTCTCAAGTCCGTGGTCCCAA
GTGCAGCAACCGCTTTCGAGCTCGTCTCTCAGTCTTAAAAGTAGACGAAG
AGGAAGAGGAGGAGGAAGAGGGAAGGAGGGAAGGAGGGAAAGAGGGAGGG
AGGCCTCGGGTGTTCGTTTTGAGAGGGGGCTTTCAGGGATGGTATGCGAG
GTATAGAAAAGAGATAGGCATGGTGGTGCCATGCGAGGATGAGTAGAGTG
GCATGAAGACGAGCGGGTGGATACCTTGGTACAGGAACTCAAGTGGCCAA
ACTGCCGGGGGCGATAAACGTGCCAAGTGAAGATGCCTCGAGCCGCCTTC
CTCCCGACCCGACACGCCATCATCTTCCTCTCCTTCCTCCCCCTCTTCCT
CCTCCTCATCCCCCTCGTCCCCGTACCCTGCGTTTCCTCCTTCTCCTTTA
TCAACCCCATTTCTATTGGGAGTAGCAGCAGAAGCGTCAGTGGCACCAGC
AGGCGTAGCAGCGTTAGCAGAACCAGCAGCGAGAAGAGCATCAGCAGCAG
CAGTACAGGCATGTCCTCTTCCTTCCTTCCCTGCCGACCATCGTTCATCG
AGCCCGAGGAATTACTAGCTCTCCTCCAGGCACAACGACAGGGAGTTAAA
TCTCCCACAATAAAGATCGTAGACGTGCGTGACGACGACTTTGAAG
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Synonyms
Publications