jgi.p|Nanoce1779_2|608600, mRNA_10025 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|608600
Unique NamemRNA_10025
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1113
Alignment locationscaffold_42:77799..78911 -

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Properties
Property NameValue
TranscriptId608686
TrackFilteredModels2
ProteinId608600
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_42supercontigscaffold_42:77799..78911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608600gene_10025Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|608600mRNA_10025-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_10025CDS_10025Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_10025 ID=mRNA_10025|Name=jgi.p|Nanoce1779_2|608600|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp
GTAACGCGGAGGTACAAAGAGCATCAATACACACTTGCGTGACCGTCCCT
CCGACCTCCTACCCGTCCGACGCGACTACGCGCCTGCCATGCTGTACACC
TCTGCAGGATCAGATCCTACACGCACCCGCATCGCGATGAACTGACTCTT
CTACTATGTTTTTCGCTCCTACTTAATTGATGTGCACCAGAACCATGACG
TCTTATTCTCCGATTCCACTCACTGCCACAGGTCACGCCAGCATCAGCCA
AGGCACACCCATTCTGATACCAACCTCCTTCTATGGCGACGCCATCATAT
TCACTCATATATTGCATCGGCACCCTCCTGTTTTTTGCCTTCAGCACACA
CGCCTTTCTCCTCCCTACCACCATCAAGCGGAGCAGCAGGTCATCAAGTC
GCTGCACTCTTCGCATGTCGGCTGCTTCTTCATCCCCACCCTCTGAAGCC
GAATTAGTAAAGGTATTTGGTCGTCTTGCAGACAAAGCTATCTTCATGGA
CGAAAGCGCTGGACAATGTTGTCACTCCGGCTGCGACAACTGCGAATGGC
GTTATGATTTTGACATCATGCGTGCCGCCCGCCCAAAATGGCTGGTAACG
TATGCCGAGCGAAAATTTGATTCCGACGCGCACACTGCCAAGTGGAAGGC
GCTCTTTGACGCTCCATCTGCCCCTATCTCTTCCTCTCCTCTCTCAGACG
AAGACATCTTCAACACGGAGACAGCTGGTCCTACTCCCTTGTCCTCCGCT
GTCTTGCTTGCGGAACGGCTCTCGGCTCTGCCTTTTAGCGCGCCGTTGGG
GCCAAGCGTGAGTGTGCCCGGTGAAGAGCCACTCCAGGCTGAGACTGTTG
CATGGCTGTGGGAGAAACTGGTGCCGGCGGGGAGTAAGAGTAGGACATTG
ACGGCGAGGTTGATGGAGAAGCGATTGAAGGAGTGGGCGAGTGGAAAGGA
TTCGATGATGTGGGGGGACTTCGTTGCCAAGATGACGAGCGAGGAGTGAA
GAGTGAGGGATTGAATAAAAAAAAGTCGAGGGAGAAGAGGAAAATACACT
GTAATATAGAAAGAACGTGAACGAAGCGAAGGAAAAAAGAAAAGCCAAGG
GCGGATATTCGGG
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protein sequence of jgi.p|Nanoce1779_2|608600

>mRNA_10025-protein ID=mRNA_10025-protein|Name=jgi.p|Nanoce1779_2|608600|organism=Nannochloropsis oceanica|type=polypeptide|length=239bp
MATPSYSLIYCIGTLLFFAFSTHAFLLPTTIKRSSRSSSRCTLRMSAASS
SPPSEAELVKVFGRLADKAIFMDESAGQCCHSGCDNCEWRYDFDIMRAAR
PKWLVTYAERKFDSDAHTAKWKALFDAPSAPISSSPLSDEDIFNTETAGP
TPLSSAVLLAERLSALPFSAPLGPSVSVPGEEPLQAETVAWLWEKLVPAG
SKSRTLTARLMEKRLKEWASGKDSMMWGDFVAKMTSEE*
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mRNA from alignment at scaffold_42:77799..78911-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10025 ID=mRNA_10025|Name=jgi.p|Nanoce1779_2|608600|organism=Nannochloropsis oceanica|type=mRNA|length=1113bp|location=Sequence derived from alignment at scaffold_42:77799..78911- (Nannochloropsis oceanica)
GTAACGCGGAGGTACAAAGAGCATCAATACACACTTGCGTGACCGTCCCT
CCGACCTCCTACCCGTCCGACGCGACTACGCGCCTGCCATGCTGTACACC
TCTGCAGGATCAGATCCTACACGCACCCGCATCGCGATGAACTGACTCTT
CTACTATGTTTTTCGCTCCTACTTAATTGATGTGCACCAGAACCATGACG
TCTTATTCTCCGATTCCACTCACTGCCACAGGTCACGCCAGCATCAGCCA
AGGCACACCCATTCTGATACCAACCTCCTTCTATGGCGACGCCATCATAT
TCACTCATATATTGCATCGGCACCCTCCTGTTTTTTGCCTTCAGCACACA
CGCCTTTCTCCTCCCTACCACCATCAAGCGGAGCAGCAGGTCATCAAGTC
GCTGCACTCTTCGCATGTCGGCTGCTTCTTCATCCCCACCCTCTGAAGCC
GAATTAGTAAAGGTATTTGGTCGTCTTGCAGACAAAGCTATCTTCATGGA
CGAAAGCGCTGGACAATGTTGTCACTCCGGCTGCGACAACTGCGAATGGC
GTTATGATTTTGACATCATGCGTGCCGCCCGCCCAAAATGGCTGGTAACG
TATGCCGAGCGAAAATTTGATTCCGACGCGCACACTGCCAAGTGGAAGGC
GCTCTTTGACGCTCCATCTGCCCCTATCTCTTCCTCTCCTCTCTCAGACG
AAGACATCTTCAACACGGAGACAGCTGGTCCTACTCCCTTGTCCTCCGCT
GTCTTGCTTGCGGAACGGCTCTCGGCTCTGCCTTTTAGCGCGCCGTTGGG
GCCAAGCGTGAGTGTGCCCGGTGAAGAGCCACTCCAGGCTGAGACTGTTG
CATGGCTGTGGGAGAAACTGGTGCCGGCGGGGAGTAAGAGTAGGACATTG
ACGGCGAGGTTGATGGAGAAGCGATTGAAGGAGTGGGCGAGTGGAAAGGA
TTCGATGATGTGGGGGGACTTCGTTGCCAAGATGACGAGCGAGGAGTGAA
GAGTGAGGGATTGAATAAAAAAAAGTCGAGGGAGAAGAGGAAAATACACT
GTAATATAGAAAGAACGTGAACGAAGCGAAGGAAAAAAGAAAAGCCAAGG
GCGGATATTCGGG
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Coding sequence (CDS) from alignment at scaffold_42:77799..78911-

>mRNA_10025 ID=mRNA_10025|Name=jgi.p|Nanoce1779_2|608600|organism=Nannochloropsis oceanica|type=CDS|length=717bp|location=Sequence derived from alignment at scaffold_42:77799..78911- (Nannochloropsis oceanica)
ATGGCGACGCCATCATATTCACTCATATATTGCATCGGCACCCTCCTGTT
TTTTGCCTTCAGCACACACGCCTTTCTCCTCCCTACCACCATCAAGCGGA
GCAGCAGGTCATCAAGTCGCTGCACTCTTCGCATGTCGGCTGCTTCTTCA
TCCCCACCCTCTGAAGCCGAATTAGTAAAGGTATTTGGTCGTCTTGCAGA
CAAAGCTATCTTCATGGACGAAAGCGCTGGACAATGTTGTCACTCCGGCT
GCGACAACTGCGAATGGCGTTATGATTTTGACATCATGCGTGCCGCCCGC
CCAAAATGGCTGGTAACGTATGCCGAGCGAAAATTTGATTCCGACGCGCA
CACTGCCAAGTGGAAGGCGCTCTTTGACGCTCCATCTGCCCCTATCTCTT
CCTCTCCTCTCTCAGACGAAGACATCTTCAACACGGAGACAGCTGGTCCT
ACTCCCTTGTCCTCCGCTGTCTTGCTTGCGGAACGGCTCTCGGCTCTGCC
TTTTAGCGCGCCGTTGGGGCCAAGCGTGAGTGTGCCCGGTGAAGAGCCAC
TCCAGGCTGAGACTGTTGCATGGCTGTGGGAGAAACTGGTGCCGGCGGGG
AGTAAGAGTAGGACATTGACGGCGAGGTTGATGGAGAAGCGATTGAAGGA
GTGGGCGAGTGGAAAGGATTCGATGATGTGGGGGGACTTCGTTGCCAAGA
TGACGAGCGAGGAGTGA
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Synonyms
Publications