NO30G00950.1, NO30G00950.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00950.1
Unique NameNO30G00950.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1601
Alignment locationchr30:354049..355912 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:354049..355912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00950.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00950NO30G00950Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00950.1NO30G00950.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00950.1.cds1NO30G00950.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00950.1.cds2NO30G00950.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00950.1 ID=NO30G00950.1|Name=NO30G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp
ATGCCGCAGTTCTCTGTCAACCTCCTCCCTCCCTTCCTTCAACCCCCTTC
CCAACAACCACACAGCGGGAAGCAAGCAGCAACGCTTGTGTATGGTATGA
AAAAAGTCGTCCGATCCATCACTTTTCCGATCGGCGCACCGATATGTGGC
AGTAACCCCAGCAGTAGCAACCGCAGTAGCAGCAACCGCAGCAGCAGCAA
CAGCTGCGAAAAGGAGGAGGAGCAGGAAGAGGAGGAGGACGATGACCAGT
GGCAGCGCCACCACCAAAAGAGATGCAAGACGAACGAAGCTTCTGCTGCA
GCTGCTGATACTGCTGATAGAGGCGTTTGTCGTACTCCTCTTGCTGCTGG
GTCAAAAGGAATAGAAGAAGCAGCAGAAGCAGCAGCAGCAGAAGCAGTAA
CAGCAGCAGCTACAACACCAACACCAAAAACCACCGCGTTGGGCGTAGCT
CCCCTTTCCTCCTCCCCCCGCCCCATCACCATCCACCTACAAGAATGCCT
CGATGGCGCTTTTGGCTTGTTCCTGTGGTCCGCCGCCAAGAAGTTGGCCT
CTTTCCTCTTCAGGTTGTGGCAGCAGGAGCCTTTAATGTTCAAAGGCAAG
CGTGTCATTGAGCTCGGGGCTGGCACCGCGCTTCCAGGCTTGTTGTGCGC
CCATCCCTTCTTCGGCACCTCTTATGTCCTCCTCACGGACAGGGAGGACT
CCCCGTTAGTGCTGGAGAACGCCCGACAGTCGGTACTTTTGAATGGGCAC
TGCCTAACCGGGGAAGCAGGAGGGGGAGGAGGGGGAATAGGAGGGGGGAG
AGGAGGAGTAGGAGGAGGAGGAGGAGGAGGGGGAATAGGAGGGGGAATAG
GAGAGGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGA
ACGGTAGTGGCAGTAGAGGGATGGACATGGGGAGACCCAAGGAAATTCCT
GGAGGGAGAAAGAAAAGGAGGATGGGATATCATCCTAGCTGCGGACTGCT
GTTACCACGAGGCCGAAACGGAAGGGTTTCTCGCAACGGCTGCGTTTCTG
TTGAGGGGCTATTCCAATTTCTCCTCTTCTTCTTCTTCCTCCTCCTCCTC
ACCTGTCCTTTACATGAGCTACCCGGACAGGGGGATGGAAGGCCTCCGTC
CTCGTTTTCGTCGATGGGGCCTGACAGCCAAGGAGGTGGAGGGAGGGGGG
GAGGACGAGGAGGAGAGCGAGGAGGAGGAGGGGGTGAGGGTTTATGTTCT
GGAAGTGCGCTTGGCGAGGAATGCAAAAGAAGGGAAGGGCGAGAGGGAGG
GTGGGAAGGAGGGCGGGAAGGAGGGAGGGACGGGATGAGCAGAGGGCGGG
AGGGAGGCAGAAAAGGAAGAGGAAAGGAGGAAGAAGAAGAGGAGGAGGAG
AAGAGATGCAAGAGAAGAAGGAGGAGACACAGGAGGAGGAGGCAAAGGCC
GGTAGAATAAGAATTAAAAGTATTTAAAGTGTGCACAAGCTAATGAAAAT
CGGAAGAGATGTAAAAGATGTCTTGTGAACGATATTATTTTGCCATAAGA
ACATTAAAGAAATACCTTGAGAATAATGTAATTACAAAAAAACTTGTATG
T
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protein sequence of NO30G00950.1

>NO30G00950.1-protein ID=NO30G00950.1-protein|Name=NO30G00950.1|organism=Nannochloropsis oceanica|type=polypeptide|length=446bp
MPQFSVNLLPPFLQPPSQQPHSGKQAATLVYGMKKVVRSITFPIGAPICG
SNPSSSNRSSSNRSSSNSCEKEEEQEEEEDDDQWQRHHQKRCKTNEASAA
AADTADRGVCRTPLAAGSKGIEEAAEAAAAEAVTAAATTPTPKTTALGVA
PLSSSPRPITIHLQECLDGAFGLFLWSAAKKLASFLFRLWQQEPLMFKGK
RVIELGAGTALPGLLCAHPFFGTSYVLLTDREDSPLVLENARQSVLLNGH
CLTGEAGGGGGGIGGGRGGVGGGGGGGGIGGGIGEGRGGGGGGGGGGGEG
TVVAVEGWTWGDPRKFLEGERKGGWDIILAADCCYHEAETEGFLATAAFL
LRGYSNFSSSSSSSSSSPVLYMSYPDRGMEGLRPRFRRWGLTAKEVEGGG
EDEEESEEEEGVRVYVLEVRLARNAKEGKGEREGGKEGGKEGGTG*
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mRNA from alignment at chr30:354049..355912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00950.1 ID=NO30G00950.1|Name=NO30G00950.1|organism=Nannochloropsis oceanica|type=mRNA|length=1864bp|location=Sequence derived from alignment at chr30:354049..355912+ (Nannochloropsis oceanica)
ATGCCGCAGTTCTCTGTCAACCTCCTCCCTCCCTTCCTTCAACCCCCTTC
CCAACAACCACACAGCGGGAAGCAAGCAGCAACGCTTGTGTATGGTATGA
AAAAAGTCGTCCGATCCATCACTTTTCCGATCGGCGCACCGATATGTGGC
AGTAACCCCAGCAGTAGCAACCGCAGTAGCAGCAACCGCAGCAGCAGCAA
CAGCTGCGAAAAGGAGGAGGAGCAGGAAGAGGAGGAGGACGATGACCAGT
GGCAGCGCCACCACCAAAAGAGATGCAAGACGAACGAAGCTTCTGCTGCA
GCTGCTGATACTGCTGATAGAGGCGTTTGTCGTACTCCTCTTGCTGCTGG
GTCAAAAGGAATAGAAGAAGCAGCAGAAGCAGCAGCAGCAGAAGCAGTAA
CAGCAGCAGCTACAACACCAACACCAAAAACCACCGCGTTGGGCGTAGCT
CCCCTTTCCTCCTCCCCCCGCCCCATCACCATCCACCTACAAGAATGCCT
CGATGGCGCTTTTGGCTTGTTCCTGTGGTCCGCCGCCAAGAAGTTGGCCT
CTTTCCTCTTCAGGTTGTGGCAGCAGGAGCCTTTAATGTTCAAAGGCAAG
CGTGTCATTGAGCTCGGGGCTGGGTACGTGCACTAGCACCATAAGAGGGG
GGAGAGAAGGACAGAGGGGAGGGAGGGAGGGAGGGAGAGAGGGACGGAAT
GGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGGTTCGTCTTTGGGGCTCGT
CAAGGATAACGGCCATGGGACCAGAGATGGAAGCAGGGCCTATTTAATGC
CCCTTTTTTCTACGCACTTGTATAGATTCTTACCCCTCCCTCCCTCCCTC
CCTACCTCCCCCCCTCCCTCTTCTCTTCTGTTTCAGCACCGCGCTTCCAG
GCTTGTTGTGCGCCCATCCCTTCTTCGGCACCTCTTATGTCCTCCTCACG
GACAGGGAGGACTCCCCGTTAGTGCTGGAGAACGCCCGACAGTCGGTACT
TTTGAATGGGCACTGCCTAACCGGGGAAGCAGGAGGGGGAGGAGGGGGAA
TAGGAGGGGGGAGAGGAGGAGTAGGAGGAGGAGGAGGAGGAGGGGGAATA
GGAGGGGGAATAGGAGAGGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGAGGGAACGGTAGTGGCAGTAGAGGGATGGACATGGGGAGACC
CAAGGAAATTCCTGGAGGGAGAAAGAAAAGGAGGATGGGATATCATCCTA
GCTGCGGACTGCTGTTACCACGAGGCCGAAACGGAAGGGTTTCTCGCAAC
GGCTGCGTTTCTGTTGAGGGGCTATTCCAATTTCTCCTCTTCTTCTTCTT
CCTCCTCCTCCTCACCTGTCCTTTACATGAGCTACCCGGACAGGGGGATG
GAAGGCCTCCGTCCTCGTTTTCGTCGATGGGGCCTGACAGCCAAGGAGGT
GGAGGGAGGGGGGGAGGACGAGGAGGAGAGCGAGGAGGAGGAGGGGGTGA
GGGTTTATGTTCTGGAAGTGCGCTTGGCGAGGAATGCAAAAGAAGGGAAG
GGCGAGAGGGAGGGTGGGAAGGAGGGCGGGAAGGAGGGAGGGACGGGATG
AGCAGAGGGCGGGAGGGAGGCAGAAAAGGAAGAGGAAAGGAGGAAGAAGA
AGAGGAGGAGGAGAAGAGATGCAAGAGAAGAAGGAGGAGACACAGGAGGA
GGAGGCAAAGGCCGGTAGAATAAGAATTAAAAGTATTTAAAGTGTGCACA
AGCTAATGAAAATCGGAAGAGATGTAAAAGATGTCTTGTGAACGATATTA
TTTTGCCATAAGAACATTAAAGAAATACCTTGAGAATAATGTAATTACAA
AAAAACTTGTATGT
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Coding sequence (CDS) from alignment at chr30:354049..355912+

>NO30G00950.1 ID=NO30G00950.1|Name=NO30G00950.1|organism=Nannochloropsis oceanica|type=CDS|length=1338bp|location=Sequence derived from alignment at chr30:354049..355912+ (Nannochloropsis oceanica)
ATGCCGCAGTTCTCTGTCAACCTCCTCCCTCCCTTCCTTCAACCCCCTTC
CCAACAACCACACAGCGGGAAGCAAGCAGCAACGCTTGTGTATGGTATGA
AAAAAGTCGTCCGATCCATCACTTTTCCGATCGGCGCACCGATATGTGGC
AGTAACCCCAGCAGTAGCAACCGCAGTAGCAGCAACCGCAGCAGCAGCAA
CAGCTGCGAAAAGGAGGAGGAGCAGGAAGAGGAGGAGGACGATGACCAGT
GGCAGCGCCACCACCAAAAGAGATGCAAGACGAACGAAGCTTCTGCTGCA
GCTGCTGATACTGCTGATAGAGGCGTTTGTCGTACTCCTCTTGCTGCTGG
GTCAAAAGGAATAGAAGAAGCAGCAGAAGCAGCAGCAGCAGAAGCAGTAA
CAGCAGCAGCTACAACACCAACACCAAAAACCACCGCGTTGGGCGTAGCT
CCCCTTTCCTCCTCCCCCCGCCCCATCACCATCCACCTACAAGAATGCCT
CGATGGCGCTTTTGGCTTGTTCCTGTGGTCCGCCGCCAAGAAGTTGGCCT
CTTTCCTCTTCAGGTTGTGGCAGCAGGAGCCTTTAATGTTCAAAGGCAAG
CGTGTCATTGAGCTCGGGGCTGGCACCGCGCTTCCAGGCTTGTTGTGCGC
CCATCCCTTCTTCGGCACCTCTTATGTCCTCCTCACGGACAGGGAGGACT
CCCCGTTAGTGCTGGAGAACGCCCGACAGTCGGTACTTTTGAATGGGCAC
TGCCTAACCGGGGAAGCAGGAGGGGGAGGAGGGGGAATAGGAGGGGGGAG
AGGAGGAGTAGGAGGAGGAGGAGGAGGAGGGGGAATAGGAGGGGGAATAG
GAGAGGGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGGA
ACGGTAGTGGCAGTAGAGGGATGGACATGGGGAGACCCAAGGAAATTCCT
GGAGGGAGAAAGAAAAGGAGGATGGGATATCATCCTAGCTGCGGACTGCT
GTTACCACGAGGCCGAAACGGAAGGGTTTCTCGCAACGGCTGCGTTTCTG
TTGAGGGGCTATTCCAATTTCTCCTCTTCTTCTTCTTCCTCCTCCTCCTC
ACCTGTCCTTTACATGAGCTACCCGGACAGGGGGATGGAAGGCCTCCGTC
CTCGTTTTCGTCGATGGGGCCTGACAGCCAAGGAGGTGGAGGGAGGGGGG
GAGGACGAGGAGGAGAGCGAGGAGGAGGAGGGGGTGAGGGTTTATGTTCT
GGAAGTGCGCTTGGCGAGGAATGCAAAAGAAGGGAAGGGCGAGAGGGAGG
GTGGGAAGGAGGGCGGGAAGGAGGGAGGGACGGGATGA
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Synonyms
Publications