NO30G00940.1, NO30G00940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00940.1
Unique NameNO30G00940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length549
Alignment locationchr30:352270..353701 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:352270..353701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00940.1 vs.
Match: XP_003719350.1 (hypothetical protein MGG_01909 [Magnaporthe oryzae 70-15]; EHA46983.1 hypothetical protein MGG_01909 [Magnaporthe oryzae 70-15]; ELQ35505.1 hypothetical protein OOU_Y34scaffold00706g9 [Magnaporthe oryzae Y34]; ELQ69547.1 hypothetical protein OOW_P131scaffold00145g4 [Magnaporthe oryzae P131])

HSP 1 Score: 98.6 bits (244), Expect = 2.100e-17
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 0 
Query:   42 TPEFLEAAAVRDLILAQRDQAASQRKVQIVDVRGSDFSEGKLPGALNVASEGLKDMDRVDKLVEELMDKEMVIFHCGKSHQRGPQSAARFLSRLQ----------AATAAAVAAGKDVGPKVYVLKGGWEGWQKQYGEEEGMVE 176
            T E + AA +RDL+LA++   A   KV +VDVR  D+  G + GALNV S+ L+   R+  L+ +L DK  VIFHC  S QRGP +A R++              AA ++A  A + V  KVYVL  G+ GWQ+ YGE+E + E
Sbjct:    6 TLERIPAAKLRDLLLAEK---ADDPKVAVVDVRDDDYIGGHIKGALNVPSQQLEA--RMPTLIRQLQDKPTVIFHCALSQQRGPGAALRYIRERDEALKKANDKDAAASSAPGASQPVEQKVYVLDRGFVGWQEVYGEDENLTE 144
The following BLAST results are available for this feature:
BLAST of NO30G00940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_003719350.12.100e-1742.36hypothetical protein MGG_01909 [Magnaporthe oryzae... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00940NO30G00940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00940.1NO30G00940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00940.1.cds1NO30G00940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00940.1.cds2NO30G00940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00940.1.cds3NO30G00940.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00940.1.cds4NO30G00940.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00940.1.cds5NO30G00940.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00940.1.cds6NO30G00940.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00940.1 ID=NO30G00940.1|Name=NO30G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=549bp
ATGACGACCCCCGCGGCCGTCACCACTACTACCGACAACAATGAGAGCAG
CAGCAATAGCAGCAGTGGGAGCAACATTGCGCCAACTGCCCGTACCAGCA
GCACCACCATATCTCCCTTCCCTACGCCCGAGTTTCTCGAGGCCGCCGCT
GTGCGGGATCTGATCCTGGCCCAAAGGGACCAGGCCGCAAGCCAACGGAA
GGTTCAAATTGTGGATGTCCGAGGCTCGGATTTTTCCGAGGGCAAATTAC
CTGGGGCCCTCAACGTGGCCAGTGAAGGGTTGAAGGACATGGACCGCGTC
GATAAGCTTGTGGAGGAGCTAATGGACAAGGAGATGGTCATCTTCCACTG
TGGCAAGAGCCATCAACGCGGTCCACAATCTGCCGCACGTTTCCTCTCCC
GCCTTCAGGCTGCCACTGCTGCTGCTGTAGCTGCTGGTAAGGACGTGGGA
CCCAAAGTCTATGTTTTGAAGGGAGGGTGGGAAGGGTGGCAGAAGCAATA
CGGGGAGGAGGAAGGGATGGTGGAGGCCTTGGAAGATATCCCCATGTGA
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protein sequence of NO30G00940.1

>NO30G00940.1-protein ID=NO30G00940.1-protein|Name=NO30G00940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=183bp
MTTPAAVTTTTDNNESSSNSSSGSNIAPTARTSSTTISPFPTPEFLEAAA
VRDLILAQRDQAASQRKVQIVDVRGSDFSEGKLPGALNVASEGLKDMDRV
DKLVEELMDKEMVIFHCGKSHQRGPQSAARFLSRLQAATAAAVAAGKDVG
PKVYVLKGGWEGWQKQYGEEEGMVEALEDIPM*
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mRNA from alignment at chr30:352270..353701-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00940.1 ID=NO30G00940.1|Name=NO30G00940.1|organism=Nannochloropsis oceanica|type=mRNA|length=1432bp|location=Sequence derived from alignment at chr30:352270..353701- (Nannochloropsis oceanica)
ATGACGACCCCCGCGGCCGTCACCACTACTACCGACAACAATGAGAGCAG
CAGCAATAGCAGCAGTGGGAGCAACATTGCGCCAACTGCCCGTACCAGCA
GCACCACCATATCTCCCTTCCCTACGCCCGAGTTTCTCGAGGCCGCCGCT
GTGCGGGATCTGATCCTGGGTATGTCCTTTCTTAATTGCTTTGGTTCAAG
CAAAGCTCGTCCAACCAGACTTCACTCCATGCATCCCTTCGGTTTCACTT
TCCTTTCTTCCTTTCCTGCTGCAGTGAATTGAATCGCAATCCTTTCCTTC
CCGCCCTCCCTCCCTCCCCTCTTCCCTCTCGCCCTCCCTCCCTCCCTCCC
TCTCACGACAGCCCAAAGGGACCAGGCCGCAAGCCAACGGAAGGTTCAAA
TTGTGGATGTCCGAGGCTCGGATTTTTCCGGTAAAGAGGAAGGGAGGGAG
GGAGGGCGAGAGGGAAGAGGGAAGGGAGGGAGGGATTGAATGGAAGATGG
CCTACGATACCTACATTATGTAGCTCACTTCTCCTCCCTCCCTCCTTCCC
TTCCTTCCTCTCTCCCTTTCTTCCCTCCTTTCGAAAGGTCAAGTCCAGAA
TCTCTGACTTTCCCTCCACAAAACCCCACCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCTTGTTCAGAGGGCAAATTACCTGGGGCCCTCAACGTGGCCAG
TGAAGGGTTGAAGGACATGGACCGCGTCGATAAGCTTGTGGAGGAGCTAA
TGGTAGGGACGGAGGGAAGGAAGGGCGGCAACGGATGATGACAGACAGAA
ATTTCGGTGTCGCTTTCCTCGGTGTCTCACATCTTTTGTTACCTCTCCCT
CCCTCTCTTCTTCCCTCCTTCTCTCCTTCCCTCCTCCCTTCAATTTACAA
GGACAAGGAGATGGTCATCTTCCACTGTGGCAAGGTACGAATTAAAAGCC
CTTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCCCATCCTTCCT
TCCATTCATTCGCCCCACCCTCCTTCCCTCCCTCTCTTCACAGAGCCATC
AACGCGGTCCACAATCTGCCGCACGTTTCCTCTCCCGCCTTCAGGCTGCC
ACTGCTGCTGCTGTAGCTGCTGGTACGTGTGTTTTTCCCCTCTCCGCCTT
CTCTCTTTCTTTTTTCCCCCGGGAGAGAAGGGGGGGGGGGCTTGCCGCAA
TATCTCCTTTTCCTCTCTTCTCTCTGCTTCCTTCCTTCCTTTTATGTCCT
CTTACTTTGTCCCTGATGACTCATCGTTCCACTGTACGACCCTTCCCTCC
CTCCCTCCCTCCCTGCCAGGTAAGGACGTGGGACCCAAAGTCTATGTTTT
GAAGGGAGGGTGGGAAGGGTGGCAGAAGCAATACGGGGAGGAGGAAGGGA
TGGTGGAGGCCTTGGAAGATATCCCCATGTGA
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Coding sequence (CDS) from alignment at chr30:352270..353701-

>NO30G00940.1 ID=NO30G00940.1|Name=NO30G00940.1|organism=Nannochloropsis oceanica|type=CDS|length=549bp|location=Sequence derived from alignment at chr30:352270..353701- (Nannochloropsis oceanica)
ATGACGACCCCCGCGGCCGTCACCACTACTACCGACAACAATGAGAGCAG
CAGCAATAGCAGCAGTGGGAGCAACATTGCGCCAACTGCCCGTACCAGCA
GCACCACCATATCTCCCTTCCCTACGCCCGAGTTTCTCGAGGCCGCCGCT
GTGCGGGATCTGATCCTGGCCCAAAGGGACCAGGCCGCAAGCCAACGGAA
GGTTCAAATTGTGGATGTCCGAGGCTCGGATTTTTCCGAGGGCAAATTAC
CTGGGGCCCTCAACGTGGCCAGTGAAGGGTTGAAGGACATGGACCGCGTC
GATAAGCTTGTGGAGGAGCTAATGGACAAGGAGATGGTCATCTTCCACTG
TGGCAAGAGCCATCAACGCGGTCCACAATCTGCCGCACGTTTCCTCTCCC
GCCTTCAGGCTGCCACTGCTGCTGCTGTAGCTGCTGGTAAGGACGTGGGA
CCCAAAGTCTATGTTTTGAAGGGAGGGTGGGAAGGGTGGCAGAAGCAATA
CGGGGAGGAGGAAGGGATGGTGGAGGCCTTGGAAGATATCCCCATGTGA
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Synonyms
Publications