NO30G00720.8, NO30G00720.8 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00720.8
Unique NameNO30G00720.8
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length826
Alignment locationchr30:261534..262754 -

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:261534..262754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00720.8 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00720NO30G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00720.8NO30G00720.8-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00720.8.cds1NO30G00720.8.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00720.8.cds2NO30G00720.8.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00720.8 ID=NO30G00720.8|Name=NO30G00720.8|organism=Nannochloropsis oceanica|type=mRNA|length=826bp
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGCCT
AGGAGAAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGTGGTA
CGAGTGGTTGTTGACTCGGCGGATATCGACGGTCAGCAGGGGCAGCAACT
TGGCGCGAGCAAGAGGAACATAGAATCGGGGAATGTGTAACGGATGGAAG
TTAATCATATAAATAAATAACATTGG
back to top

protein sequence of NO30G00720.8

>NO30G00720.8-protein ID=NO30G00720.8-protein|Name=NO30G00720.8|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MHAEFCTSRIKGGPIFVLQKSSECRSGGNVTTPAFCRMGRATATTSYFLL
SFSLHSPPSCFLHCTVMPGFSKHKNNTICTHVYRTCDWFTGAAAAHMFPG
LHRSQASILVLRTLPPCFPKNAALRRRKPVLYMFTFMMRAGLVTLVVPEL
GGNGQGMWWPPTFPPATIRLQLRVPPPLCGLLLLLLLPDSSSVLLLEQLL
LNIIHLSLRHLATQVSLGEDARRKDNEESPEGGTSGC*
back to top

mRNA from alignment at chr30:261534..262754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00720.8 ID=NO30G00720.8|Name=NO30G00720.8|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr30:261534..262754- (Nannochloropsis oceanica)
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGGTA
TGAATTTCTCCCGTTTCAGTGAATCAAAGAGAGACATGACATTTAGAGGA
GAAGTGATTTCCAACAGTCTATTCTTTACTATAACCAGAGCCTCATCCTC
TCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGATCTCCTCCTC
CGAATCCCTTCCCCCCTCTCCGCTTACTTCCTCCCGCCCCATCTCCCTCA
TGGCCCATCCTTTTATCTGTCAATCGAGCAAAAAAATAATGTCTAATGGA
AGATTGGCAAGAGGGTACGCGAAAAGCCATACGTACGGGTACAGTGCAAG
AGCGAGGTCTGCATCTGCATCTAATCCTCTCTTCCTCCCTCTCACCTTCC
CTCCTTCCATCCCTCCTGCCCCTTTCTCCCTCTCCTACGTAGCCTAGGAG
AAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGTGGTACGAGT
GGTTGTTGACTCGGCGGATATCGACGGTCAGCAGGGGCAGCAACTTGGCG
CGAGCAAGAGGAACATAGAATCGGGGAATGTGTAACGGATGGAAGTTAAT
CATATAAATAAATAACATTGG
back to top

Coding sequence (CDS) from alignment at chr30:261534..262754-

>NO30G00720.8 ID=NO30G00720.8|Name=NO30G00720.8|organism=Nannochloropsis oceanica|type=CDS|length=714bp|location=Sequence derived from alignment at chr30:261534..262754- (Nannochloropsis oceanica)
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGCCT
AGGAGAAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGTGGTA
CGAGTGGTTGTTGA
back to top
Synonyms
Publications