NO30G00720.6, NO30G00720.6 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00720.6
Unique NameNO30G00720.6
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1130
Alignment locationchr30:261534..262754 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:261534..262754 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00720.6 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00720NO30G00720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00720.6NO30G00720.6-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00720.6.cds1NO30G00720.6.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00720.6.cds2NO30G00720.6.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00720.6 ID=NO30G00720.6|Name=NO30G00720.6|organism=Nannochloropsis oceanica|type=mRNA|length=1130bp
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGAGC
CTCATCCTCTCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGAT
CTCCTCCTCCGAATCCCTTCCCCCCTCTCCGCTTACTTCCTCCCGCCCCA
TCTCCCTCATGGCCCATCCTTTTATCTGTCAATCGAGCAAAAAAATAATG
TCTAATGGAAGATTGGCAAGAGGGTACGCGAAAAGCCATACGTACGGGTA
CAGTGCAAGAGCGAGGTCTGCATCTGCATCTAATCCTCTCTTCCTCCCTC
TCACCTTCCCTCCTTCCATCCCTCCTGCCCCTTTCTCCCTCTCCTACGTA
GCCTAGGAGAAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGT
GGTACGAGTGGTTGTTGACTCGGCGGATATCGACGGTCAGCAGGGGCAGC
AACTTGGCGCGAGCAAGAGGAACATAGAATCGGGGAATGTGTAACGGATG
GAAGTTAATCATATAAATAAATAACATTGG
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protein sequence of NO30G00720.6

>NO30G00720.6-protein ID=NO30G00720.6-protein|Name=NO30G00720.6|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MHAEFCTSRIKGGPIFVLQKSSECRSGGNVTTPAFCRMGRATATTSYFLL
SFSLHSPPSCFLHCTVMPGFSKHKNNTICTHVYRTCDWFTGAAAAHMFPG
LHRSQASILVLRTLPPCFPKNAALRRRKPVLYMFTFMMRAGLVTLVVPEL
GGNGQGMWWPPTFPPATIRLQLRVPPPLCGLLLLLLLPDSSSVLLLEQLL
LNIIHLSLRHLATQVRASSSRGSGQRIETRRV*
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mRNA from alignment at chr30:261534..262754-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00720.6 ID=NO30G00720.6|Name=NO30G00720.6|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr30:261534..262754- (Nannochloropsis oceanica)
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGGTA
TGAATTTCTCCCGTTTCAGTGAATCAAAGAGAGACATGACATTTAGAGGA
GAAGTGATTTCCAACAGTCTATTCTTTACTATAACCAGAGCCTCATCCTC
TCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGATCTCCTCCTC
CGAATCCCTTCCCCCCTCTCCGCTTACTTCCTCCCGCCCCATCTCCCTCA
TGGCCCATCCTTTTATCTGTCAATCGAGCAAAAAAATAATGTCTAATGGA
AGATTGGCAAGAGGGTACGCGAAAAGCCATACGTACGGGTACAGTGCAAG
AGCGAGGTCTGCATCTGCATCTAATCCTCTCTTCCTCCCTCTCACCTTCC
CTCCTTCCATCCCTCCTGCCCCTTTCTCCCTCTCCTACGTAGCCTAGGAG
AAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGTGGTACGAGT
GGTTGTTGACTCGGCGGATATCGACGGTCAGCAGGGGCAGCAACTTGGCG
CGAGCAAGAGGAACATAGAATCGGGGAATGTGTAACGGATGGAAGTTAAT
CATATAAATAAATAACATTGG
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Coding sequence (CDS) from alignment at chr30:261534..262754-

>NO30G00720.6 ID=NO30G00720.6|Name=NO30G00720.6|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr30:261534..262754- (Nannochloropsis oceanica)
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGAGC
CTCATCCTCTCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGA
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Synonyms
Publications