NO30G00720.1, NO30G00720.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00720.1
Unique Name	NO30G00720.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1026
Alignment location	chr30:261534..262754 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:261534..262754 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO30G00720.1 vs.

BLAST of NO30G00720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00720	NO30G00720	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00720.1	NO30G00720.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00720.1.cds1	NO30G00720.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00720.1.cds2	NO30G00720.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:261534..262754-
coding sequence from alignment at chr30:261534..262754-

mRNA sequence

>NO30G00720.1 ID=NO30G00720.1|Name=NO30G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1026bp
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGAGC
CTCATCCTCTCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGAT
CTCCTCCTCCGAATCCCTTCCCCCCTCTCCGCTTACTTCCTCCCGCCCCA
TCTCCCTCATGGCCCATCCTTTTATCTGTCAATCGAGCAAAAAAATAATG
TCTAATGGAAGATTGGCAAGAGGGTACGCGAAAAGCCATACGTACGGCCT
AGGAGAAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGTGGTA
CGAGTGGTTGTTGACTCGGCGGATATCGACGGTCAGCAGGGGCAGCAACT
TGGCGCGAGCAAGAGGAACATAGAATCGGGGAATGTGTAACGGATGGAAG
TTAATCATATAAATAAATAACATTGG

protein sequence of NO30G00720.1

>NO30G00720.1-protein ID=NO30G00720.1-protein|Name=NO30G00720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MHAEFCTSRIKGGPIFVLQKSSECRSGGNVTTPAFCRMGRATATTSYFLL
SFSLHSPPSCFLHCTVMPGFSKHKNNTICTHVYRTCDWFTGAAAAHMFPG
LHRSQASILVLRTLPPCFPKNAALRRRKPVLYMFTFMMRAGLVTLVVPEL
GGNGQGMWWPPTFPPATIRLQLRVPPPLCGLLLLLLLPDSSSVLLLEQLL
LNIIHLSLRHLATQVRASSSRGSGQRIETRRV*

mRNA from alignment at chr30:261534..262754-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00720.1 ID=NO30G00720.1|Name=NO30G00720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1221bp|location=Sequence derived from alignment at chr30:261534..262754- (Nannochloropsis oceanica)
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGGTA
TGAATTTCTCCCGTTTCAGTGAATCAAAGAGAGACATGACATTTAGAGGA
GAAGTGATTTCCAACAGTCTATTCTTTACTATAACCAGAGCCTCATCCTC
TCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGATCTCCTCCTC
CGAATCCCTTCCCCCCTCTCCGCTTACTTCCTCCCGCCCCATCTCCCTCA
TGGCCCATCCTTTTATCTGTCAATCGAGCAAAAAAATAATGTCTAATGGA
AGATTGGCAAGAGGGTACGCGAAAAGCCATACGTACGGGTACAGTGCAAG
AGCGAGGTCTGCATCTGCATCTAATCCTCTCTTCCTCCCTCTCACCTTCC
CTCCTTCCATCCCTCCTGCCCCTTTCTCCCTCTCCTACGTAGCCTAGGAG
AAGATGCCCGGCGGAAAGATAACGAGGAAAGCCCAGAAGGTGGTACGAGT
GGTTGTTGACTCGGCGGATATCGACGGTCAGCAGGGGCAGCAACTTGGCG
CGAGCAAGAGGAACATAGAATCGGGGAATGTGTAACGGATGGAAGTTAAT
CATATAAATAAATAACATTGG

Coding sequence (CDS) from alignment at chr30:261534..262754-

>NO30G00720.1 ID=NO30G00720.1|Name=NO30G00720.1|organism=Nannochloropsis oceanica|type=CDS|length=699bp|location=Sequence derived from alignment at chr30:261534..262754- (Nannochloropsis oceanica)
ATGCACGCCGAATTTTGTACATCCAGGATCAAAGGTGGTCCAATTTTCGT
TTTACAAAAGTCCTCAGAGTGTCGTAGTGGTGGCAATGTTACCACGCCCG
CTTTCTGTCGGATGGGCCGGGCAACAGCAACGACTTCCTACTTCCTCCTC
TCTTTCTCTCTCCATTCACCCCCTTCGTGCTTCTTGCATTGCACAGTCAT
GCCCGGATTCTCAAAGCACAAGAACAACACAATATGTACACATGTATACA
GGACATGCGATTGGTTTACGGGTGCGGCGGCTGCGCATATGTTTCCTGGC
CTGCATCGTTCACAAGCGAGTATCTTGGTCCTCCGTACCCTCCCTCCGTG
CTTTCCCAAGAACGCAGCACTCCGCCGTAGGAAGCCGGTCCTCTACATGT
TCACCTTCATGATGCGAGCTGGGCTGGTGACGCTGGTGGTGCCTGAGCTT
GGTGGGAATGGCCAAGGAATGTGGTGGCCTCCAACCTTCCCTCCTGCTAC
TATAAGGTTGCAACTCCGAGTGCCACCGCCCTTGTGTGGGCTGCTGCTGC
TCCTGCTACTGCCTGATAGTTCCTCAGTGCTGCTGCTGGAGCAGTTGCTG
CTGAATATCATCCACCTATCCCTCCGGCATCTCGCCACACAAGTCAGAGC
CTCATCCTCTCGAGGATCAGGGCAAAGGATCGAAACAAGAAGAGTCTGA

Synonyms

Publications