NO30G00710.2, NO30G00710.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00710.2
Unique NameNO30G00710.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2178
Alignment locationchr30:259097..261510 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:259097..261510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00710.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00710NO30G00710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00710.2NO30G00710.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00710.2.cds1NO30G00710.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00710.2.cds2NO30G00710.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00710.2 ID=NO30G00710.2|Name=NO30G00710.2|organism=Nannochloropsis oceanica|type=mRNA|length=2178bp
AATGGTCCCTATTTTGATATGGCCCACCCACAACCCACACCAACTCACCC
TCCTAGGGCTGCTTTTTGGTGTCTCCTTTTTTGCCAAAAAGGGCTTTTTG
GCTTCCTCTCACTATTCTGATTGCAACCATTTCAGGCACATGTCTCACAT
CCTCTCACTTCTTACAAAAACACAAAAAATGTAAAATCCTGGGTTTTGCG
TTCCTCATTTTCGACGGAGAACTGCGACCCCACCACATTTTCTCGCGCGG
CGTGTGCATTGAGCTCCAAGCATGAACAGAACACTTGCAGCCTAAACTTT
GAGCTCAACCTTGGCAGCCATACCTCTTGGCAGGGTCAGGATTGCATTTA
CATACGTCTTCCTTGTCCCTGCGGGCGGCATTTAAAACTACCCCCCTCCG
TAGGTCATCCTTGACCCTAATCCCTCCTAAATCTCACTCCTGCCTGATCA
TCATCCATAGCAAGCCCTACAAAGATAATTTTGAAAGCATTATTGGTCGC
TGCTCGTCCTCATACCATGGCTCCACGTGCCACGCAGCTGCGCTTTTTCA
TTCTCTTTTTGCGTGGGGGCATGTAAGCTGCCAAATTAATCGGCCAGGAA
GAGAGCGAAACTTAGCTCGTCTTGCTTTTATGCGACGTTCAAGCTCGCAT
TTAAAGCGCATAATCGTCGACTTACTTATCTTACGACTATTTCGCCCTGT
ATTTCATCCTCTCGTCCCCCTTTTCCCTTTCCTCCCCTCCTTCCTCACAC
ACCGCCTAAAAGCAATACTACGCGTTAAAATAGACCACCTCGTCCGCGCT
TGGATAGATACACGCCCAGTCCAAAACACCTACGACCAGAACAAGCAAGA
TGAGCGACATCCCATACGAAGACCAGTTTAAGCATATCGAGGGCGGGGAA
TACGAATTCCGTAGGTCTTGTTATTGGCTTCACTTGTTCGCTACTCATAC
ACTCACCCGCTTCCTGTCCCTTCGTCCCTGGTTTTCTCTCAATGATGTTG
GAGAACGTAAATTTTCTGTGTCTGCCATGGGTTTATCAGGCACCCAAGCT
TACTCTACTCCTCTGCTGATGTGTGCTTCTCTCCCTCCCTAACTCTCCCC
TTCACTCACTCCTTCTTTTCAGTACCGCAGGATATGGGCCCTGGTAGTGT
AGAGCGAGCAGGGAGCTTCGAAGCTCATACAGCACAGCAAGCCCGCGGTG
GCAAAGGACAAGGAGGAGAAGGAGAAGGAGAAGGAGAGGAAGGGTTGGAG
GAAGGCGACGAGGAAGAGCCTCCGAAAATGCTTGCATGTGATGAGAAGGG
AGAGGTTAAAGCACCTCAGGTCTATCGTTCAACCAGTGGTGCCAAAGGAA
GCTCCATCCTGCCAGGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGA
GCGACGCGACAGGGATTTGCGCGAGGAGCTGTGGCGGGGGTGTCGACGGT
GATGGAGGAAAAAGGAGGAGAAGAGAGGGGAGAAGGGGGGATAAGGATAC
AGGGGACTTCGTCGGGGGTCGGAGAGCTCGAGAGGGGTTGAGGGAGGAAG
GGAGTAAGGAAGGAGGGGAGGAAGGGAGGGAGGGTGAGAGGAAAGAGGAA
AGAGGAAAGAAGGGAGAATACAAAAGATTTTTGGGGTATTAGAGAGAGAA
AAGAGGTGAAAAAGGAGGGGACGAAAGAATATTTATATATGTACCAAAAA
CTAGTAAAAGCGAGAAAGAGAGACCGGGAGGGAGGGAGAAAACGAGATGT
GGTGACATGGAGAGAGAGAGACTGGAGACATCCACACACAGAGAGAGACA
GAGACAGACAGAGACAGAGACAGAAGGGGGGAGAGAGAGGGAGAGGGAAA
GAGCAAAGAAAGAATTAGAGCAGCCCCATTAACATAAGAAGAAAAGGTAC
TGATTGAAAAGAGATAGGCAGGAAAGGGAGCATGAGGAGAAGAAGGGAAG
GAGATCGGACAATGGGAGACGACATCAATGCCAGGGTACATTGCCATGGG
ACATGGGCGTACGTGCAAGTATTGTTACTCGTCTTCCCTCTCCTCCCTCC
CTCCCTCCCTTCCTTCCTTCCTTCCCCTCTTTGCACCTCCAGGCATGCGG
CGAAGAAGAATTCACATCAGACATGTCAACAGGTTAAAGCTTAAACAGAA
AGAAGCGAAAAAAACAAGTACACTCAGG
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protein sequence of NO30G00710.2

>NO30G00710.2-protein ID=NO30G00710.2-protein|Name=NO30G00710.2|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MGPGSVERAGSFEAHTAQQARGGKGQGGEGEGEGEEGLEEGDEEEPPKML
ACDEKGEVKAPQVYRSTSGAKGSSILPGKEGGREGGKEGATRQGFARGAV
AGVSTVMEEKGGEERGEGGIRIQGTSSGVGELERG*
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mRNA from alignment at chr30:259097..261510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00710.2 ID=NO30G00710.2|Name=NO30G00710.2|organism=Nannochloropsis oceanica|type=mRNA|length=2414bp|location=Sequence derived from alignment at chr30:259097..261510+ (Nannochloropsis oceanica)
AATGGTCCCTATTTTGATATGGCCCACCCACAACCCACACCAACTCACCC
TCCTAGGGCTGCTTTTTGGTGTCTCCTTTTTTGCCAAAAAGGGCTTTTTG
GCTTCCTCTCACTATTCTGATTGCAACCATTTCAGGCACATGTCTCACAT
CCTCTCACTTCTTACAAAAACACAAAAAATGTAAAATCCTGGGTTTTGCG
TTCCTCATTTTCGACGGAGAACTGCGACCCCACCACATTTTCTCGCGCGG
CGTGTGCATTGAGCTCCAAGCATGAACAGAACACTTGCAGCCTAAACTTT
GAGCTCAACCTTGGCAGCCATACCTCTTGGCAGGGTCAGGATTGCATTTA
CATACGTCTTCCTTGTCCCTGCGGGCGGCATTTAAAACTACCCCCCTCCG
TAGGTCATCCTTGACCCTAATCCCTCCTAAATCTCACTCCTGCCTGATCA
TCATCCATAGCAAGCCCTACAAAGATAATTTTGAAAGCATTATTGGTCGC
TGCTCGTCCTCATACCATGGCTCCACGTGCCACGCAGCTGCGCTTTTTCA
TTCTCTTTTTGCGTGGGGGCATGTAAGCTGCCAAATTAATCGGCCAGGAA
GAGAGCGAAACTTAGCTCGTCTTGCTTTTATGCGACGTTCAAGCTCGCAT
TTAAAGCGCATAATCGTCGACTTACTTATCTTACGACTATTTCGCCCTGT
ATTTCATCCTCTCGTCCCCCTTTTCCCTTTCCTCCCCTCCTTCCTCACAC
ACCGCCTAAAAGCAATACTACGCGTTAAAATAGACCACCTCGTCCGCGCT
TGGATAGATACACGCCCAGTCCAAAACACCTACGACCAGAACAAGCAAGA
TGAGCGACATCCCATACGAAGACCAGTTTAAGCATATCGAGGGCGGGGAA
TACGAATTCCGTAGGTCTTGTTATTGGCTTCACTTGTTCGCTACTCATAC
ACTCACCCGCTTCCTGTCCCTTCGTCCCTGGTTTTCTCTCAATGATGTTG
GAGAACGTAAATTTTCTGTGTCTGCCATGGGTTTATCAGGCACCCAAGCT
TACTCTACTCCTCTGCTGATGTGTGCTTCTCTCCCTCCCTAACTCTCCCC
TTCACTCACTCCTTCTTTTCAGTACCGCAGGATATGGGCCCTGGTAGTGT
AGAGCGAGCAGGGAGCTTCGAAGCTCATACAGGTAGGTGGAGGAGGTAAG
GATTGGAGATAGAGACGAGAAAGGGGAGAGAATTGGGAAGACATCGCAAA
ATGAGAGACAGGCATGTAGCCTTTGATATCTCGCATCGGGTCCATGCGTA
CACCACCCTCCATACTTTGAGCTCTTCTTCTTTTTCATTTTTCTCCACCT
CCTCCTCCTTTTTCTGTCCCTCTCTATTTATGACTCCATGGACATGCACC
TGCCGCATCATCCATCAGCACAGCAAGCCCGCGGTGGCAAAGGACAAGGA
GGAGAAGGAGAAGGAGAAGGAGAGGAAGGGTTGGAGGAAGGCGACGAGGA
AGAGCCTCCGAAAATGCTTGCATGTGATGAGAAGGGAGAGGTTAAAGCAC
CTCAGGTCTATCGTTCAACCAGTGGTGCCAAAGGAAGCTCCATCCTGCCA
GGGAAGGAGGGAGGGAGGGAGGGAGGGAAGGAGGGAGCGACGCGACAGGG
ATTTGCGCGAGGAGCTGTGGCGGGGGTGTCGACGGTGATGGAGGAAAAAG
GAGGAGAAGAGAGGGGAGAAGGGGGGATAAGGATACAGGGGACTTCGTCG
GGGGTCGGAGAGCTCGAGAGGGGTTGAGGGAGGAAGGGAGTAAGGAAGGA
GGGGAGGAAGGGAGGGAGGGTGAGAGGAAAGAGGAAAGAGGAAAGAAGGG
AGAATACAAAAGATTTTTGGGGTATTAGAGAGAGAAAAGAGGTGAAAAAG
GAGGGGACGAAAGAATATTTATATATGTACCAAAAACTAGTAAAAGCGAG
AAAGAGAGACCGGGAGGGAGGGAGAAAACGAGATGTGGTGACATGGAGAG
AGAGAGACTGGAGACATCCACACACAGAGAGAGACAGAGACAGACAGAGA
CAGAGACAGAAGGGGGGAGAGAGAGGGAGAGGGAAAGAGCAAAGAAAGAA
TTAGAGCAGCCCCATTAACATAAGAAGAAAAGGTACTGATTGAAAAGAGA
TAGGCAGGAAAGGGAGCATGAGGAGAAGAAGGGAAGGAGATCGGACAATG
GGAGACGACATCAATGCCAGGGTACATTGCCATGGGACATGGGCGTACGT
GCAAGTATTGTTACTCGTCTTCCCTCTCCTCCCTCCCTCCCTCCCTTCCT
TCCTTCCTTCCCCTCTTTGCACCTCCAGGCATGCGGCGAAGAAGAATTCA
CATCAGACATGTCAACAGGTTAAAGCTTAAACAGAAAGAAGCGAAAAAAA
CAAGTACACTCAGG
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Coding sequence (CDS) from alignment at chr30:259097..261510+

>NO30G00710.2 ID=NO30G00710.2|Name=NO30G00710.2|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at chr30:259097..261510+ (Nannochloropsis oceanica)
ATGGGCCCTGGTAGTGTAGAGCGAGCAGGGAGCTTCGAAGCTCATACAGC
ACAGCAAGCCCGCGGTGGCAAAGGACAAGGAGGAGAAGGAGAAGGAGAAG
GAGAGGAAGGGTTGGAGGAAGGCGACGAGGAAGAGCCTCCGAAAATGCTT
GCATGTGATGAGAAGGGAGAGGTTAAAGCACCTCAGGTCTATCGTTCAAC
CAGTGGTGCCAAAGGAAGCTCCATCCTGCCAGGGAAGGAGGGAGGGAGGG
AGGGAGGGAAGGAGGGAGCGACGCGACAGGGATTTGCGCGAGGAGCTGTG
GCGGGGGTGTCGACGGTGATGGAGGAAAAAGGAGGAGAAGAGAGGGGAGA
AGGGGGGATAAGGATACAGGGGACTTCGTCGGGGGTCGGAGAGCTCGAGA
GGGGTTGA
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Synonyms
Publications