NO30G00640.1, NO30G00640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00640.1
Unique NameNO30G00640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1320
Alignment locationchr30:241355..243493 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:241355..243493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00640.1 vs.
Match: CBN74306.1 (biotin synthase [Ectocarpus siliculosus])

HSP 1 Score: 507.3 bits (1305), Expect = 4.800e-140
Identity = 250/340 (73.53%), Postives = 287/340 (84.41%), Query Frame = 0 
Query:   64 ETRVMGNTRAVLRNDWTRAEIQALYDQPFIELLYQAATIHRMYWNPQEVQQCTLLSIKTGGCTEDCKYCSQSVRYKTHVKPTPQMKVAEVVEAAKRAKAAGSTRFCMGAAWRELGNKKNAFGHILDMVREVNGMGLEVCATLGMLNPEQARQLKAAGLTAYNHNLDTSPEYYPKVITTRSYEDRLNTLSAVRDAGLNVCSGGILGLGEADSDRIGLLHTLATLPAHPESVPINALVAVEGTPMQE---SHAPSIWDMGRMIATARIVMPKTMVRLSAGRLSFSKGEQALMFFAGANSIFNGDVLLTTPNPEFSADMDLFEKIGLVGKKAHVPAKETPYEV 401
            ETR M    A +RNDWT+ EI+ +Y+ P +ELLY+A+++HRM+++P EVQQCTLLSIKTGGCTEDC YCSQSVR+KT VKPTPQMK+ EV+ AAKRAK AGSTRFCMGAAWRELGNKK AF +ILDMVREVNGMG+EVC TLGMLN EQA+QLK AGLTAYNHNLDTS E+YP VITTRSYEDRL T+S VR+AG++VC GGILGLGE ++DR+GLLHTLATL  HPESVPINALVAVEGTP+ +   +  P IWDMGRMIATAR+VMP+TMVRLSAGRLSFS+ EQA+MF AGANSIF GD LLTT NPEF AD  LF K+GL GK AH    + P E+
Sbjct:   45 ETRSMNGIDATVRNDWTKEEIREVYEMPMLELLYRASSVHRMFFDPTEVQQCTLLSIKTGGCTEDCGYCSQSVRHKTFVKPTPQMKIDEVMAAAKRAKEAGSTRFCMGAAWRELGNKKKAFNNILDMVREVNGMGMEVCCTLGMLNGEQAKQLKEAGLTAYNHNLDTSREFYPSVITTRSYEDRLETISNVREAGISVCCGGILGLGEEENDRVGLLHTLATLEEHPESVPINALVAVEGTPLADEGKADTPDIWDMGRMIATARVVMPRTMVRLSAGRLSFSEAEQAMMFMAGANSIFTGDRLLTTSNPEFDADKALFAKLGLNGKPAHSAPLQPPMEM 384
The following BLAST results are available for this feature:
BLAST of NO30G00640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
CBN74306.14.800e-14073.53biotin synthase [Ectocarpus siliculosus][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00640NO30G00640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00640.1NO30G00640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00640.1.cds1NO30G00640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00640.1.cds2NO30G00640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00640.1.cds3NO30G00640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00640.1.cds4NO30G00640.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00640.1.cds5NO30G00640.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00640.1 ID=NO30G00640.1|Name=NO30G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1320bp
ATGATGATGCGTCGTCTTGTCACTGCCACCGGCCGAATCAGAACCAGTAG
AGCGGGACGAATTGCAGTCACGCGCCGTACCCTGTCCGTTCAGCCTTTGG
AAGAGGAGTCTACGCCTGTGACAGTCCACCACTCCTCTGCCATCGCTGCT
CCTGCGGCTGCTCCTATCCCTACCTCTGCCTTCCAAAGCGAGACCCGCGT
TATGGGCAACACTCGAGCAGTCCTTCGCAATGACTGGACTCGCGCGGAGA
TCCAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAGCCGCA
ACCATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGCACCCT
CCTCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTGCTCCC
AGTCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGATGAAGGTG
GCTGAAGTCGTGGAGGCTGCCAAGCGAGCCAAGGCCGCGGGGAGCACCCG
GTTCTGCATGGGGGCAGCATGGCGGGAGCTGGGGAATAAGAAGAATGCCT
TTGGGCACATTTTGGATATGGTTCGCGAGGTGAACGGCATGGGCCTCGAA
GTGTGCGCCACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAA
GGCCGCGGGTCTGACGGCCTACAACCACAACCTGGACACTTCGCCTGAGT
ACTACCCCAAGGTCATCACCACCAGGTCTTACGAGGACCGCCTCAATACT
CTCTCGGCCGTGCGTGACGCCGGTCTCAACGTCTGCTCCGGGGGCATCCT
GGGGCTCGGAGAGGCGGACAGCGACCGCATCGGCCTCTTGCATACCCTCG
CCACCCTCCCCGCGCACCCGGAATCGGTGCCCATCAACGCATTGGTGGCC
GTGGAAGGCACGCCCATGCAGGAGAGCCACGCGCCCTCGATCTGGGACAT
GGGCCGCATGATTGCTACGGCGCGCATCGTCATGCCCAAGACGATGGTGC
GTCTCTCGGCCGGACGCTTGTCCTTCAGCAAGGGCGAGCAGGCGCTCATG
TTTTTTGCAGGCGCAAACTCGATTTTCAATGGTGACGTGTTATTGACGAC
CCCGAACCCAGAGTTTAGTGCCGATATGGATCTGTTTGAGAAGATCGGAT
TGGTGGGGAAGAAGGCCCATGTCCCTGCCAAGGAAACGCCCTATGAAGTG
CAAAGACTTCAGCAGGAGGAAGCCGAAGCTGAGGCGAACACGGAAGTAAA
GTGGATGGAGGAGGAGGGTGGGAGGGATGGAGGAGTGGTGGTCACGAGGA
GTCGAGCTCAGATGGCGTAG
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protein sequence of NO30G00640.1

>NO30G00640.1-protein ID=NO30G00640.1-protein|Name=NO30G00640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MMMRRLVTATGRIRTSRAGRIAVTRRTLSVQPLEEESTPVTVHHSSAIAA
PAAAPIPTSAFQSETRVMGNTRAVLRNDWTRAEIQALYDQPFIELLYQAA
TIHRMYWNPQEVQQCTLLSIKTGGCTEDCKYCSQSVRYKTHVKPTPQMKV
AEVVEAAKRAKAAGSTRFCMGAAWRELGNKKNAFGHILDMVREVNGMGLE
VCATLGMLNPEQARQLKAAGLTAYNHNLDTSPEYYPKVITTRSYEDRLNT
LSAVRDAGLNVCSGGILGLGEADSDRIGLLHTLATLPAHPESVPINALVA
VEGTPMQESHAPSIWDMGRMIATARIVMPKTMVRLSAGRLSFSKGEQALM
FFAGANSIFNGDVLLTTPNPEFSADMDLFEKIGLVGKKAHVPAKETPYEV
QRLQQEEAEAEANTEVKWMEEEGGRDGGVVVTRSRAQMA*
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mRNA from alignment at chr30:241355..243493+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00640.1 ID=NO30G00640.1|Name=NO30G00640.1|organism=Nannochloropsis oceanica|type=mRNA|length=2139bp|location=Sequence derived from alignment at chr30:241355..243493+ (Nannochloropsis oceanica)
ATGATGATGCGTCGTCTTGTCACTGCCACCGGCCGAATCAGAACCAGTAG
AGCGGGACGAATTGCAGTCACGCGCCGTACCCTGTCCGTTCAGCCTTTGG
AAGAGGAGTCTACGCCTGTGACAGTCCACCACTCCTCTGCCATCGCTGCT
CCTGCGGCTGCTCCTATCCCTACCTCTGCCTTCCAAAGCGAGACCCGCGT
TATGGGCAACACTCGAGCAGTCCTTCGCAATGTACGTTTGAATAGACTGG
CGAGGTTCTCATCTCATATTTTCTTTCTCATAGATTTACAATCGCTTCTT
TTCCCCCTTCCTCCACTCCCTCCCTTAATATCAGGACTGGACTCGCGCGG
AGATCCAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAGCC
GCAACCATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGCAC
CCTCCTCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTGCT
CCCAGTCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGGTACAC
GCCACGCCCTCCCTCCCCCCTCTGTTTCCTTAATTGGCTCTTCGGGTACA
TGCCCTCCCTTCCTCCCTCTGTTCGTTTTAATCACCCCTTAGGTGCACGC
CCTCTCCCCCTCCCTCTATCTGTCTTTTCCTCTCGTGCCTGCATGGCGTC
CAGCTCCTAAATCCCGTCAAGTTCAACCCCTCCTGCTTCCTTTCCATCCT
TCTCTCCCTCCCTCCTCTCAGATGAAGGTGGCTGAAGTCGTGGAGGCTGC
CAAGCGAGCCAAGGCCGCGGGGAGCACCCGGTTCTGCATGGGGGCAGCAT
GGCGGGAGCTGGGGAATAAGAAGAATGCCTTTGGGCACATTTTGGATATG
GTTCGCGAGGTAAGGGGATGAAAAGGGACGATGTGAGGAGTCGGATGGTG
GGTCCAGGGTGTCTCACTGGCGGACTCGGCGAGGAGCTGGAGGCGGTGGA
TAGGGAGGAGGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
AAGAGGTGGGTACCTAATCGAGAGAGATTGTGTGAATCGTGTGTTCATTG
TCTCCTGTGTCTCGCATGGATTGACAGGTGAACGGCATGGGCCTCGAAGT
GTGCGCCACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAAGG
CCGCGGGTCTGACGGCCTACAACCACAACCTGGACACTTCGCCTGAGTAC
TACCCCAAGGTCATCACCACCAGGTGGGGGGGGGAGGGAGGGAGGGGTAG
GAAGGAGGGAGGGGTGGAGGGAGGGGGGGAAGGGAGGGCAATGGAACCGC
TGCTGGGACACAATCTGATCTGTCGGGCGCCACGTTGTGAATGACGCATA
ACCCGAATGTTCAACCCCGGAGCCATCAAACCATCTTCGGCAGCGAATAA
CAATAACAATAACGATCTTCTCTCTACATCTTAATCGAATAACAATAACA
AAAACGATTCTTCTCCCTTCCACCCTTATTACCACGCCCTCCAGGTCTTA
CGAGGACCGCCTCAATACTCTCTCGGCCGTGCGTGACGCCGGTCTCAACG
TCTGCTCCGGGGGCATCCTGGGGCTCGGAGAGGCGGACAGCGACCGCATC
GGCCTCTTGCATACCCTCGCCACCCTCCCCGCGCACCCGGAATCGGTGCC
CATCAACGCATTGGTGGCCGTGGAAGGCACGCCCATGCAGGAGAGCCACG
CGCCCTCGATCTGGGACATGGGCCGCATGATTGCTACGGCGCGCATCGTC
ATGCCCAAGACGATGGTGCGTCTCTCGGCCGGACGCTTGTCCTTCAGCAA
GGGCGAGCAGGCGCTCATGTTTTTTGCAGGCGCAAACTCGATTTTCAATG
GTGACGTGTTATTGACGACCCCGAACCCAGAGTTTAGTGCCGATATGGAT
CTGTTTGAGAAGATCGGATTGGTGGGGAAGAAGGCCCATGTCCCTGCCAA
GGAAACGCCCTATGAAGTGCAAAGACTTCAGCAGGAGGAAGCCGAAGCTG
AGGCGAACACGGAAGTAAAGTGGATGGAGGAGGAGGGTGGGAGGGATGGA
GGAGTGGTGGTCACGAGGAGTCGAGCTCAGATGGCGTAG
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Coding sequence (CDS) from alignment at chr30:241355..243493+

>NO30G00640.1 ID=NO30G00640.1|Name=NO30G00640.1|organism=Nannochloropsis oceanica|type=CDS|length=1320bp|location=Sequence derived from alignment at chr30:241355..243493+ (Nannochloropsis oceanica)
ATGATGATGCGTCGTCTTGTCACTGCCACCGGCCGAATCAGAACCAGTAG
AGCGGGACGAATTGCAGTCACGCGCCGTACCCTGTCCGTTCAGCCTTTGG
AAGAGGAGTCTACGCCTGTGACAGTCCACCACTCCTCTGCCATCGCTGCT
CCTGCGGCTGCTCCTATCCCTACCTCTGCCTTCCAAAGCGAGACCCGCGT
TATGGGCAACACTCGAGCAGTCCTTCGCAATGACTGGACTCGCGCGGAGA
TCCAGGCCCTGTACGACCAGCCATTCATCGAGCTCCTCTATCAAGCCGCA
ACCATCCATCGCATGTACTGGAACCCCCAAGAAGTCCAGCAGTGCACCCT
CCTCTCCATCAAGACCGGCGGCTGCACCGAAGACTGCAAATACTGCTCCC
AGTCCGTGCGCTACAAGACACACGTCAAACCCACCCCTCAGATGAAGGTG
GCTGAAGTCGTGGAGGCTGCCAAGCGAGCCAAGGCCGCGGGGAGCACCCG
GTTCTGCATGGGGGCAGCATGGCGGGAGCTGGGGAATAAGAAGAATGCCT
TTGGGCACATTTTGGATATGGTTCGCGAGGTGAACGGCATGGGCCTCGAA
GTGTGCGCCACCCTAGGGATGCTGAACCCCGAGCAAGCCCGGCAGCTCAA
GGCCGCGGGTCTGACGGCCTACAACCACAACCTGGACACTTCGCCTGAGT
ACTACCCCAAGGTCATCACCACCAGGTCTTACGAGGACCGCCTCAATACT
CTCTCGGCCGTGCGTGACGCCGGTCTCAACGTCTGCTCCGGGGGCATCCT
GGGGCTCGGAGAGGCGGACAGCGACCGCATCGGCCTCTTGCATACCCTCG
CCACCCTCCCCGCGCACCCGGAATCGGTGCCCATCAACGCATTGGTGGCC
GTGGAAGGCACGCCCATGCAGGAGAGCCACGCGCCCTCGATCTGGGACAT
GGGCCGCATGATTGCTACGGCGCGCATCGTCATGCCCAAGACGATGGTGC
GTCTCTCGGCCGGACGCTTGTCCTTCAGCAAGGGCGAGCAGGCGCTCATG
TTTTTTGCAGGCGCAAACTCGATTTTCAATGGTGACGTGTTATTGACGAC
CCCGAACCCAGAGTTTAGTGCCGATATGGATCTGTTTGAGAAGATCGGAT
TGGTGGGGAAGAAGGCCCATGTCCCTGCCAAGGAAACGCCCTATGAAGTG
CAAAGACTTCAGCAGGAGGAAGCCGAAGCTGAGGCGAACACGGAAGTAAA
GTGGATGGAGGAGGAGGGTGGGAGGGATGGAGGAGTGGTGGTCACGAGGA
GTCGAGCTCAGATGGCGTAG
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Synonyms
Publications