NO30G00590.1, NO30G00590.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00590.1
Unique Name	NO30G00590.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3043
Alignment location	chr30:225266..228794 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:225266..228794 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO30G00590.1 vs.
Match: KRP13307.1 (hypothetical protein ABR95_04990 [Sphingobacteriales bacterium BACL12 MAG-120813-bin55])

HSP 1 Score: 128.6 bits (322), Expect = 2.700e-26
Identity = 78/245 (31.84%), Postives = 127/245 (51.84%), Query Frame = 0

Query:   13 RIALVTGADHGLGLEYCKQLSNQGYLVVGTAKDAVNATELNDLARESQNKVFVQQLDQTKVDEIKNLTEALRTRNYRLDLLILNAGVAEKEHP-------NVNASQLEHKELMDMFEVNVCGTASVIKHMLPLVLESHEKKVIGVTTNMASLEEATADKPYISAGYRITKAAENMLFRVWSCDPAAKDVTFLLVHPGHVKTQMGEAGGRKAPMTAEEGVQQSLSNVILRCGKQDSGHFFNYDGTE 251
            +IALVTGA  GLG E C QL+ +GY V+ TA+    A    ++ R+    V  + LD +   EI+ L E +      LDLL+ NAG+  K++P       N     L+ +++++   +N      ++KH   L+  S    V+ + + + S+    +   Y    Y  +K+A NM+ +  + +   + +  ++V+PG V+T M   GG KAP+T EE V   ++NVI R    D+G F  +DGTE
Sbjct:    2 KIALVTGAYKGLGKEICLQLAEEGYTVILTARSMEKAEAAAEVLRQDHGHVLARTLDVSNEQEIQQLAEWVEAEFGHLDLLVNNAGINSKDNPDKEVFMKNFRLDMLDAEQVLEHIRINSIAPILMVKHFRQLLRRSSRPVVVSIGSWLGSVSVKNSGGHY---SYATSKSALNMMNKAMALELKEEGIIAVVVNPGWVQTDM---GGSKAPLTPEESVNGIVNNVIKRVKIADTGKFLQWDGTE 240

The following BLAST results are available for this feature:

BLAST of NO30G00590.1 vs.

BLAST of NO30G00590.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
KRP13307.1	2.700e-26	31.84	hypothetical protein ABR95_04990 [Sphingobacterial...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00590	NO30G00590	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00590.1	NO30G00590.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00590.1.cds1	NO30G00590.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00590.1.cds2	NO30G00590.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00590.1.cds3	NO30G00590.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:225266..228794-
coding sequence from alignment at chr30:225266..228794-

mRNA sequence

>NO30G00590.1 ID=NO30G00590.1|Name=NO30G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3043bp
ACAGCCGACTCAGATAGTACACAAAATAACCATGGCATCCTCCACCGTCA
CCATGCAGCCAGACACTCGCATTGCCCTCGTCACCGGCGCGGACCATGGC
CTGGGCCTGGAATACTGCAAGCAGCTCTCCAACCAAGGCTACCTCGTGGT
GGGCACGGCCAAGGACGCTGTTAATGCCACGGAGTTAAATGATCTTGCCA
GGGAGAGCCAAAATAAAGTGTTTGTGCAGCAGCTGGACCAGACTAAGGTG
GATGAGATCAAGAACTTGACCGAGGCCCTGCGCACCCGCAACTACCGACT
CGACCTGCTGATTCTCAACGCCGGTGTGGCTGAAAAGGAGCACCCGAACG
TCAATGCCAGCCAACTAGAGCATAAGGAGCTGATGGATATGTTTGAAGTT
AACGTATGCGGCACTGCTAGCGTTATTAAGCATATGCTGCCTTTGGTGTT
GGAGTCGCACGAAAAGAAAGTGATTGGCGTGACGACCAATATGGCATCAT
TGGAGGAGGCAACCGCGGATAAGCCTTATATCTCGGCTGGATATCGCATC
ACTAAAGCGGCGGAGAATATGCTCTTCCGTGTCTGGTCCTGCGACCCCGC
CGCCAAGGACGTGACCTTCCTCCTGGTGCATCCCGGGCACGTCAAGACGC
AAATGGGGGAGGCGGGCGGACGGAAGGCCCCCATGACGGCGGAGGAGGGC
GTGCAGCAGTCTCTGTCGAATGTGATTTTGCGTTGTGGGAAGCAGGACTC
GGGCCACTTTTTCAATTATGACGGGACAGAGATTTCTTTGTAAGTGTCTA
AGTGTCTAGGACGGAGGGAGGGAGGAAGGGGCGGAAGAGCAGTGTAAATA
TCAGGAGACGTGGGGTGTGGGGTGTGGGGCGGGAGAGAAGGGATGGAAAG
AAAAGACGGGATAGAGTGGTTGTTTTTCCTGATGTAAAGAAAGAGTTTTG
CGTATGTTTTACACATTAAGGCGAAAGTGAGCAGTTTTATTCAAGAGGTG
GAAGAAGAGGACGCTCGCAAAGCGGGGAAGAGGGAAGCTAAGACACGTAG
TTGTGGTTGGCGGGCGCATGTATGCGTAGGAAGAGATGCGTTTCTGCTAT
TGTGTCGTTTTTCGAAGTGCGAAAGAGAGGACTAGTGGAAAGCGACAATG
TACACACGAAAGGACATATATACACGCGAGGAGGACGGGAGAAAGGCAGG
CAAACACCAACAAAAAAAAGAGGAGAGGAACGAATTTGACTCAAGAGGAG
GAGAGATCAACGAACATATCACACCACAACACCACCAACACGCACTGCAT
TTGTTGATGTAGACAATAGGCAACACCTGGATTTTTGCGTTGCTTATCGT
ACAACTACTTTTGACTTCAGAGTCGTGACCCAATATTTCGGGTCCTGTGA
AAGAAAGGCACGAGCCCGACACTCGTGCGTTTGGATATGTATAGATGGTA
AGTGTACCACGACTGGCTTCTCCTGGCTCTAGTGAAGAGAATCTACTGTC
TCTTTCGTGCTGGTTGTCGTGTGTATCTATATTGCGTGCCTTACTTCGGT
CGTTCCTTCTTAATCAAACCATTTTAGGGTATCTAGCCTGCCTGCTAGCG
ACTCTACTCCACCTCATGCACTTTCTCTGGTTTTATTTCCTGATGCTGCT
GTGGTGCCTCCAATTTAGCCTCAAGAACCTTTGATATACAAGTGAAGTCG
AGCTGAGTTATTTGGGCTCGTCATGCCTGATGTCCTTTCCTCCCTCCTGA
ACAAAGAAATGGCTTCTCTTTCTTCCACCTTCTCTCGCTCGATCTTCGTA
CCCTATTTCTCCCCTCGTTCATAAATTTCTCTTGTGTAATCGCTTTCACG
TTTTACATGCAAAGACCTCTCTCTGTCTCTGTCTCTCGTTAGACCTTTGT
CTCTTCTCATTGTCTCTGTGTCTATCTGTCTGTCCCTCTCGCTTACTTGG
TCTTGATAGCATGCACACAGTTACACTCGCCCGCTCTCTCTTTCCCTCCC
TTGCTCCCTTTTTGGTCCACATATTCCTCTTATTCATATCAAAATGATTT
GCATTGAATTTCCGCTTTCTCCTGTCTCCTTCTTCCCCCTTTATTATTAT
TCCTCCTTCCTGCCTACTCCCCTCCCCCTCCTCTTCCTCCGTCACTTCTA
CCTATCACTCCGTCAAGCTGGTCCCCGTAGCGCTTTCTGTTGTTATTGTT
GTTATTGCTGCTGCTGCTGCGGCTATTTTTCACTTCTTTGTCGTCGCGCA
CACATTTGTAGTTTGTACCACTGGTGCTATTTCTGTTACCTTATTGCTGC
TGCTACTGCTGCCCTTTTCGTCTGTGGCAGTAGCAGCAGTGGTCGTAGCA
GCAGAGGGAGCAGGAAATGATGAGGTCGAGGAGGAAGAAGGGCCCCAGGG
AGGGATGATACTGAATGTTTGAAGGGCTTCGGCCAGCTTGTCTGCTTCGA
GAGGCGACATCTCTGTATTCTGCAACCCTAACCCTCCTTCCTTTTTCCCT
TCCACCCTTCCGCGTCCTCCTCCTCGTCCTCGTTCCGTCCTGATTTTGCT
CAAGCCTAGCTTAGCCTTTGCCACACAAGAGAAGGGGGCAGCAGGGAGAA
GGGAGGAGCCAAATGAGTGAGGGAAGGACGGAGGAAGGCCGGCAGTGTCC
TGATAGTCGTATTAAAGCAAAACATCAGCTGCGTCATCTTGCATTGCAGA
GGCCCCACGATGGCTCGAAGCTCTCTGATCTCTGCTGTGTGACGGAACAC
TTCCGGTTGGAGCTCTGAAGCTGCAATTGGCCGGGTGGAAATGGTGCTGG
GTAGAAGTGGTGCTGATACTTACTACTTACTTGTGTTGCTGCTCGTAGGT
CTTTCGGATGAGGAGGAGGAGGGTGCGTGGGTAGGTGCCGAGTGGGAGGA
AGCATAAAAGGTGAGCTTGAACGGCGACGAGGAAGAGGACGACGAGGGTG
TTTCGTCCTTGGGCTGCTGATGCTAGGCCTTGGACGGCTCAATCTCGGAT
GAGTTTGCGGCCGGCGAAGAGGACGCCAGCTACCTATGCATGT

protein sequence of NO30G00590.1

>NO30G00590.1-protein ID=NO30G00590.1-protein|Name=NO30G00590.1|organism=Nannochloropsis oceanica|type=polypeptide|length=254bp
MASSTVTMQPDTRIALVTGADHGLGLEYCKQLSNQGYLVVGTAKDAVNAT
ELNDLARESQNKVFVQQLDQTKVDEIKNLTEALRTRNYRLDLLILNAGVA
EKEHPNVNASQLEHKELMDMFEVNVCGTASVIKHMLPLVLESHEKKVIGV
TTNMASLEEATADKPYISAGYRITKAAENMLFRVWSCDPAAKDVTFLLVH
PGHVKTQMGEAGGRKAPMTAEEGVQQSLSNVILRCGKQDSGHFFNYDGTE
ISL*

mRNA from alignment at chr30:225266..228794-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00590.1 ID=NO30G00590.1|Name=NO30G00590.1|organism=Nannochloropsis oceanica|type=mRNA|length=3529bp|location=Sequence derived from alignment at chr30:225266..228794- (Nannochloropsis oceanica)
ACAGCCGACTCAGATAGTACACAAAATAACCATGGCATCCTCCACCGTCA
CCATGCAGCCAGACACTCGCATTGCCCTCGTCACCGGCGCGGACCATGGC
CTGGGCCTGGAATACTGCAAGCAGCTCTCCAACCAAGGCTACCTCGTGGT
GGGCACGGCCAAGGACGCTGTTAATGCCACGGAGTTAAATGATCTTGCCA
GGGAGAGCCAAAATAAAGTGTTTGTGCAGCAGCTGGACCAGACTAAGGTG
GATGAGATCAAGAACTTGACCGAGGCCCTGCGCACCCGCAACTACCGACT
CGAGTAAGTATTTGGGGAGGAATGAGGAGGAGGGAGGCAAGTCACGGGGG
AAAAAATGACTTACGTCATTACCCTACCCATTTTGTGGACCAACATAATT
CCGTTCGCTCACATCTCTTCCTCCCTCTCTCCCTTTCTTCCTCCCTCCCC
TTCCACAGCCTGCTGATTCTCAACGCCGGTGTGGCTGAAAAGGAGCACCC
GAACGTCAATGCCAGCCAACTAGAGCATAAGGAGCTGATGGATATGTTTG
AAGTTAACGTATGCGGCACTGCTAGCGTTATTAAGCATATGCTGCCTTTG
GTGTTGGAGTCGCACGAAAAGAAAGTGATTGGCGTGACGACCAATATGGC
ATCATTGGAGGAGGCAACCGCGGATAAGCCTTATATCTCGGCTGGATATC
GCATCACTAAAGCGGCGGAGAATATGCGTGAGTGATGAGGGGATGGAGAG
AAGGGAGGAATCGGGTAGTTGAATAATTTCTGTGTAATTTTAATTCTTTG
TTTTTATTTGTCTTCTCGGTGACATGCTGGGGGTTAGGAAGAGGATTTTG
CGTTTTGAGGCAGTGAAGAAGAGAGGTGGGACGGTGCTTGTTCATTTTTC
TTAATATTCTTGATTCATCCGATTTGCTTCCTACCGTTCAAGTTATTCAC
ATGCCAATTGCCTTAGAACGAAGGACATTCTTTCTCGCTGCATGAGCCAC
TTTCTTTAAACATTCTGAACCCCACCTCACCCTCCCGTCCGCGCTATCTT
TCCTCCAGTCTTCCGTGTCTGGTCCTGCGACCCCGCCGCCAAGGACGTGA
CCTTCCTCCTGGTGCATCCCGGGCACGTCAAGACGCAAATGGGGGAGGCG
GGCGGACGGAAGGCCCCCATGACGGCGGAGGAGGGCGTGCAGCAGTCTCT
GTCGAATGTGATTTTGCGTTGTGGGAAGCAGGACTCGGGCCACTTTTTCA
ATTATGACGGGACAGAGATTTCTTTGTAAGTGTCTAAGTGTCTAGGACGG
AGGGAGGGAGGAAGGGGCGGAAGAGCAGTGTAAATATCAGGAGACGTGGG
GTGTGGGGTGTGGGGCGGGAGAGAAGGGATGGAAAGAAAAGACGGGATAG
AGTGGTTGTTTTTCCTGATGTAAAGAAAGAGTTTTGCGTATGTTTTACAC
ATTAAGGCGAAAGTGAGCAGTTTTATTCAAGAGGTGGAAGAAGAGGACGC
TCGCAAAGCGGGGAAGAGGGAAGCTAAGACACGTAGTTGTGGTTGGCGGG
CGCATGTATGCGTAGGAAGAGATGCGTTTCTGCTATTGTGTCGTTTTTCG
AAGTGCGAAAGAGAGGACTAGTGGAAAGCGACAATGTACACACGAAAGGA
CATATATACACGCGAGGAGGACGGGAGAAAGGCAGGCAAACACCAACAAA
AAAAAGAGGAGAGGAACGAATTTGACTCAAGAGGAGGAGAGATCAACGAA
CATATCACACCACAACACCACCAACACGCACTGCATTTGTTGATGTAGAC
AATAGGCAACACCTGGATTTTTGCGTTGCTTATCGTACAACTACTTTTGA
CTTCAGAGTCGTGACCCAATATTTCGGGTCCTGTGAAAGAAAGGCACGAG
CCCGACACTCGTGCGTTTGGATATGTATAGATGGTAAGTGTACCACGACT
GGCTTCTCCTGGCTCTAGTGAAGAGAATCTACTGTCTCTTTCGTGCTGGT
TGTCGTGTGTATCTATATTGCGTGCCTTACTTCGGTCGTTCCTTCTTAAT
CAAACCATTTTAGGGTATCTAGCCTGCCTGCTAGCGACTCTACTCCACCT
CATGCACTTTCTCTGGTTTTATTTCCTGATGCTGCTGTGGTGCCTCCAAT
TTAGCCTCAAGAACCTTTGATATACAAGTGAAGTCGAGCTGAGTTATTTG
GGCTCGTCATGCCTGATGTCCTTTCCTCCCTCCTGAACAAAGAAATGGCT
TCTCTTTCTTCCACCTTCTCTCGCTCGATCTTCGTACCCTATTTCTCCCC
TCGTTCATAAATTTCTCTTGTGTAATCGCTTTCACGTTTTACATGCAAAG
ACCTCTCTCTGTCTCTGTCTCTCGTTAGACCTTTGTCTCTTCTCATTGTC
TCTGTGTCTATCTGTCTGTCCCTCTCGCTTACTTGGTCTTGATAGCATGC
ACACAGTTACACTCGCCCGCTCTCTCTTTCCCTCCCTTGCTCCCTTTTTG
GTCCACATATTCCTCTTATTCATATCAAAATGATTTGCATTGAATTTCCG
CTTTCTCCTGTCTCCTTCTTCCCCCTTTATTATTATTCCTCCTTCCTGCC
TACTCCCCTCCCCCTCCTCTTCCTCCGTCACTTCTACCTATCACTCCGTC
AAGCTGGTCCCCGTAGCGCTTTCTGTTGTTATTGTTGTTATTGCTGCTGC
TGCTGCGGCTATTTTTCACTTCTTTGTCGTCGCGCACACATTTGTAGTTT
GTACCACTGGTGCTATTTCTGTTACCTTATTGCTGCTGCTACTGCTGCCC
TTTTCGTCTGTGGCAGTAGCAGCAGTGGTCGTAGCAGCAGAGGGAGCAGG
AAATGATGAGGTCGAGGAGGAAGAAGGGCCCCAGGGAGGGATGATACTGA
ATGTTTGAAGGGCTTCGGCCAGCTTGTCTGCTTCGAGAGGCGACATCTCT
GTATTCTGCAACCCTAACCCTCCTTCCTTTTTCCCTTCCACCCTTCCGCG
TCCTCCTCCTCGTCCTCGTTCCGTCCTGATTTTGCTCAAGCCTAGCTTAG
CCTTTGCCACACAAGAGAAGGGGGCAGCAGGGAGAAGGGAGGAGCCAAAT
GAGTGAGGGAAGGACGGAGGAAGGCCGGCAGTGTCCTGATAGTCGTATTA
AAGCAAAACATCAGCTGCGTCATCTTGCATTGCAGAGGCCCCACGATGGC
TCGAAGCTCTCTGATCTCTGCTGTGTGACGGAACACTTCCGGTTGGAGCT
CTGAAGCTGCAATTGGCCGGGTGGAAATGGTGCTGGGTAGAAGTGGTGCT
GATACTTACTACTTACTTGTGTTGCTGCTCGTAGGTCTTTCGGATGAGGA
GGAGGAGGGTGCGTGGGTAGGTGCCGAGTGGGAGGAAGCATAAAAGGTGA
GCTTGAACGGCGACGAGGAAGAGGACGACGAGGGTGTTTCGTCCTTGGGC
TGCTGATGCTAGGCCTTGGACGGCTCAATCTCGGATGAGTTTGCGGCCGG
CGAAGAGGACGCCAGCTACCTATGCATGT

Coding sequence (CDS) from alignment at chr30:225266..228794-

>NO30G00590.1 ID=NO30G00590.1|Name=NO30G00590.1|organism=Nannochloropsis oceanica|type=CDS|length=762bp|location=Sequence derived from alignment at chr30:225266..228794- (Nannochloropsis oceanica)
ATGGCATCCTCCACCGTCACCATGCAGCCAGACACTCGCATTGCCCTCGT
CACCGGCGCGGACCATGGCCTGGGCCTGGAATACTGCAAGCAGCTCTCCA
ACCAAGGCTACCTCGTGGTGGGCACGGCCAAGGACGCTGTTAATGCCACG
GAGTTAAATGATCTTGCCAGGGAGAGCCAAAATAAAGTGTTTGTGCAGCA
GCTGGACCAGACTAAGGTGGATGAGATCAAGAACTTGACCGAGGCCCTGC
GCACCCGCAACTACCGACTCGACCTGCTGATTCTCAACGCCGGTGTGGCT
GAAAAGGAGCACCCGAACGTCAATGCCAGCCAACTAGAGCATAAGGAGCT
GATGGATATGTTTGAAGTTAACGTATGCGGCACTGCTAGCGTTATTAAGC
ATATGCTGCCTTTGGTGTTGGAGTCGCACGAAAAGAAAGTGATTGGCGTG
ACGACCAATATGGCATCATTGGAGGAGGCAACCGCGGATAAGCCTTATAT
CTCGGCTGGATATCGCATCACTAAAGCGGCGGAGAATATGCTCTTCCGTG
TCTGGTCCTGCGACCCCGCCGCCAAGGACGTGACCTTCCTCCTGGTGCAT
CCCGGGCACGTCAAGACGCAAATGGGGGAGGCGGGCGGACGGAAGGCCCC
CATGACGGCGGAGGAGGGCGTGCAGCAGTCTCTGTCGAATGTGATTTTGC
GTTGTGGGAAGCAGGACTCGGGCCACTTTTTCAATTATGACGGGACAGAG
ATTTCTTTGTAA

Synonyms

Publications