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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:210156..212752 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00540.1 vs.
Match: XP_008861890.1 (hypothetical protein H310_00774 [Aphanomyces invadans]; ETW10479.1 hypothetical protein H310_00774 [Aphanomyces invadans]) HSP 1 Score: 355.5 bits (911), Expect = 4.000e-94 Identity = 262/706 (37.11%), Postives = 348/706 (49.29%), Query Frame = 0
Query: 11 ITPAEVHLLAHPSPSSSF------FVRDGAFLLAPSRSNEEDDYDDEEARQEEQAVLLREEIRTIQTQGKLCPAGMSRGSGKWND-----DDFRGDEIAWLSILSPSNPSAPSPSFSSDTFTPNKSSPSTLSIAPRSALHTLLGRLEEIRDRIDILDRGGPSPPLLNLDKCKRRSMQLAYYPGNGKRYVRHRDTFPGDIPKEGGEGDERKDKALESVRCLTMIYYLNADWTPEQGGELRLFLGDDEGGRGHQDGRFWDVAPILDRLVVFRSDVIEHEVLPVYGPRFALTCWFYGRPTNTLGPLLSSSTPSPLASLAIALPSSSSGATSAA-ATISSFLAPLHPSLKPKLNPTITVPPPLSPPSRRPRGSFSSAPPLDIEDESLNEEVEEASIFVSIASYRDSECQHTLHSLFKTAMRPERIHVGLVLQFSEEEDKACFTHPLPPLWANQVRTLSLSHLEAAGPCWARHLAQALRQNERYVLQLDSHMRFRPGWDVFLLQTLLRCPTPARSILTTYPIGYTLPSTCPSDTRPTLLCPSGFDSHGMLRQTARRCKQQQHLEQPIPSKLWASGFNFAPAQAWEEVPYDPNLRHLFFGEEVSMAARLWTWGWDFFAPPETVLYHLWSRDHRPSFRELKTEKSEDEQMKSMMRVRKLLGEGTTAQNVEELGRYGLGSVRSLREYERLLGVSFALATVTSSNAQWGGQPSDF 705
+TP + + PSP+ +F F FLL + + E QA + + R ++ + PA ++ GK N D RGD + WL P + P P L LGRL L + P L N +S QLA +PGN R+V+H DT+ +KD+ + CL YYLNADW P GG LR+ L +DG D+ P+LD LVVFRS + HEVLP R ALT WFYG PT PS + + A +P S +A TI + A L+ S P ++PPP G + PP I D ++IFVSI SY DSECQ T+ LF TA P R+ GL LQ E + + +QVR + +A GPC AR Q L + E Y LQ+DSHMRFR GWDVFL+ L +C +P R+ILTTYP+GY LP+ D RPTLLC S FDS+G++RQ ++ K +PIPS WA+GF F+ A +EV YDP+L HLFFGEE MAARLWT G+DFFAP E V+YHLWSR HRP+FR+ + +E +Q +S+ RV K+L EG + G GLG VR++ + GV ++ + ++ P +F
Sbjct: 64 MTPTDTRTVLPPSPTDNFTHNVELFGPSEVFLLR--QPDSPGFIVRENFLGAAQATRVLDACRALRESMPMRPAQVA--VGKMNQVTALVTDARGDHLLWL----PHDDKDVPP--------------------PVQHLLVQLGRLAHG------LAKAAPELALRNA-----KSTQLAIFPGNNTRFVQHVDTY-----------GSKKDQLSRRITCL---YYLNADWQPSHGGALRVHL---------KDGSHEDIPPLLDSLVVFRSADVMHEVLPTTVDRLALTTWFYGGPT-----------PSDVPTTAATIPKSLGKPNTATFETIEASPATLNRSH----TPDASLPPP------GLCGGGMALPPPAIPDLI-------STIFVSIPSYCDSECQPTVAHLFATATAPSRVFAGLCLQHDEGDPAQAIA--FAAAYGDQVRVKRMHPADATGPCLARWETQQLWRGEPYYLQIDSHMRFRQGWDVFLIHELSQCSSP-RAILTTYPLGYNLPNQITRDIRPTLLCASHFDSNGLVRQCSKVLKTSP--SKPIPSMFWAAGFAFSRATVLQEVMYDPSLTHLFFGEENVMAARLWTHGYDFFAPTEAVVYHLWSRSHRPTFRDHQRNGTEAQQ-RSIQRVLKMLKEG-------DEGPCGLGRVRTIEAFVAAQGVHYSTKEIAWASLWSNRDPIEF 666
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00540.1 ID=NO30G00540.1|Name=NO30G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2259bp ATGGCAGTTCCGCAAGATGTCCTTGACACCATCACGCCGGCTGAGGTTCA CCTGCTGGCGCACCCGTCACCATCCTCCTCCTTTTTTGTGCGTGATGGTG CCTTCCTTCTCGCACCATCGCGCTCCAACGAGGAGGACGATTACGACGAC GAAGAGGCACGCCAAGAGGAGCAGGCCGTCCTCCTCCGTGAAGAAATCCG TACCATTCAAACACAGGGCAAACTTTGTCCCGCGGGCATGAGTAGGGGGT CCGGCAAATGGAACGACGATGATTTCCGCGGGGATGAGATAGCCTGGCTT TCCATTTTGTCGCCCTCCAATCCCTCCGCCCCTTCACCCTCTTTTTCTTC AGACACCTTTACCCCAAATAAAAGCTCGCCTTCAACCCTCTCCATCGCCC CGCGCTCTGCCTTACACACCTTGCTCGGCCGTCTAGAAGAAATTAGGGAT CGCATCGATATCCTCGACCGTGGTGGCCCCTCGCCTCCCTTGCTCAATCT AGACAAATGCAAACGCCGCTCTATGCAGCTTGCCTATTACCCGGGAAATG GGAAACGCTATGTGCGGCATCGTGATACGTTTCCGGGTGATATTCCAAAG GAAGGGGGGGAGGGAGATGAAAGGAAAGACAAGGCGTTAGAGTCCGTGAG GTGCCTAACGATGATTTACTACTTGAATGCTGACTGGACGCCCGAACAAG GCGGGGAGCTTCGTCTTTTCCTGGGAGACGATGAGGGAGGAAGAGGACAC CAGGATGGAAGGTTTTGGGACGTGGCTCCGATTTTGGATCGCCTCGTGGT CTTTCGCAGTGATGTGATCGAGCACGAAGTTCTTCCAGTGTACGGGCCCC GCTTTGCCCTGACCTGCTGGTTCTACGGCCGCCCCACCAACACCCTCGGC CCCCTCCTTTCCTCATCCACTCCATCCCCCCTCGCCAGCCTCGCTATAGC CCTCCCCTCCTCCTCCTCCGGTGCTACCTCTGCTGCTGCTACCATCTCCT CCTTCCTGGCCCCTCTTCACCCTTCCCTCAAACCGAAACTCAACCCCACC ATCACAGTCCCGCCTCCCCTTTCCCCCCCTTCCCGCCGGCCCCGAGGCTC CTTCTCCTCCGCCCCTCCCCTGGACATAGAAGACGAAAGCCTGAATGAGG AAGTGGAAGAAGCGAGCATATTTGTGTCTATCGCCTCGTACCGTGACTCG GAGTGTCAACACACCTTACACAGTCTTTTCAAAACCGCCATGCGCCCCGA GCGAATTCACGTTGGCCTCGTCCTTCAGTTTTCTGAAGAAGAGGACAAGG CTTGCTTCACCCATCCCCTCCCTCCTTTGTGGGCAAATCAAGTCCGCACC CTCTCCCTTTCCCATCTGGAGGCCGCGGGCCCCTGCTGGGCGCGTCATCT TGCCCAGGCCTTGCGACAGAATGAGCGTTACGTCCTGCAACTCGACTCTC ACATGCGCTTTCGTCCGGGATGGGACGTCTTCCTCCTTCAGACCCTCCTC CGTTGTCCTACTCCTGCTCGCTCCATACTGACAACCTACCCGATAGGGTA CACTCTTCCGTCAACCTGTCCTTCCGATACTCGGCCCACCCTTCTCTGTC CCTCGGGCTTCGACTCTCACGGAATGCTGAGGCAGACGGCCCGCCGATGC AAACAGCAGCAGCATCTCGAGCAGCCCATCCCTTCTAAACTCTGGGCCAG CGGGTTCAACTTTGCACCGGCCCAAGCCTGGGAGGAGGTGCCGTATGACC CGAACCTGCGGCATTTGTTCTTTGGAGAGGAAGTGAGTATGGCGGCGAGG CTGTGGACATGGGGTTGGGATTTTTTTGCGCCTCCCGAGACAGTTTTATA TCATTTGTGGTCTCGCGACCATAGACCCTCTTTTAGGGAGCTTAAAACTG AGAAGTCGGAGGATGAGCAGATGAAGAGTATGATGAGGGTGCGGAAATTA TTGGGGGAAGGGACAACGGCACAAAATGTGGAAGAACTGGGGAGGTACGG TTTGGGGAGCGTGCGGTCGTTAAGGGAGTATGAGCGCTTGCTGGGGGTGA GTTTTGCACTTGCTACAGTAACTTCAAGTAATGCCCAGTGGGGGGGGCAG CCGTCTGATTTCTTTGAGAGCGGGAACGGAGCGATTGTAGGAGAGGGGAA TAGTGAGGGCAGAGGTAAGGAGCAGCACCACAGACAGCAGTCGGCGGCTG TGGAGGGGGTGGTGAGGACGTCGTCATTGCAGGCCTTGGTAAATAGTTTC CTCTCTTGA back to topprotein sequence of NO30G00540.1 >NO30G00540.1-protein ID=NO30G00540.1-protein|Name=NO30G00540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=753bp MAVPQDVLDTITPAEVHLLAHPSPSSSFFVRDGAFLLAPSRSNEEDDYDD EEARQEEQAVLLREEIRTIQTQGKLCPAGMSRGSGKWNDDDFRGDEIAWL SILSPSNPSAPSPSFSSDTFTPNKSSPSTLSIAPRSALHTLLGRLEEIRD RIDILDRGGPSPPLLNLDKCKRRSMQLAYYPGNGKRYVRHRDTFPGDIPK EGGEGDERKDKALESVRCLTMIYYLNADWTPEQGGELRLFLGDDEGGRGH QDGRFWDVAPILDRLVVFRSDVIEHEVLPVYGPRFALTCWFYGRPTNTLG PLLSSSTPSPLASLAIALPSSSSGATSAAATISSFLAPLHPSLKPKLNPT ITVPPPLSPPSRRPRGSFSSAPPLDIEDESLNEEVEEASIFVSIASYRDS ECQHTLHSLFKTAMRPERIHVGLVLQFSEEEDKACFTHPLPPLWANQVRT LSLSHLEAAGPCWARHLAQALRQNERYVLQLDSHMRFRPGWDVFLLQTLL RCPTPARSILTTYPIGYTLPSTCPSDTRPTLLCPSGFDSHGMLRQTARRC KQQQHLEQPIPSKLWASGFNFAPAQAWEEVPYDPNLRHLFFGEEVSMAAR LWTWGWDFFAPPETVLYHLWSRDHRPSFRELKTEKSEDEQMKSMMRVRKL LGEGTTAQNVEELGRYGLGSVRSLREYERLLGVSFALATVTSSNAQWGGQ PSDFFESGNGAIVGEGNSEGRGKEQHHRQQSAAVEGVVRTSSLQALVNSF LS* back to topmRNA from alignment at chr30:210156..212752+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00540.1 ID=NO30G00540.1|Name=NO30G00540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2597bp|location=Sequence derived from alignment at chr30:210156..212752+ (Nannochloropsis oceanica) ATGGCAGTTCCGCAAGATGTCCTTGACACCATCACGCCGGCTGAGGTTCA
CCTGCTGGCGCACCCGTCACCATCCTCCTCCTTTTTTGTGCGTGATGGTG
CCTTCCTTCTCGCACCATCGCGCTCCAACGAGGAGGACGATTACGACGAC
GAAGAGGCACGCCAAGAGGAGCAGGCCGTCCTCCTCCGTGAAGAAATCCG
TACCATTCAAACACAGGGCAAACTTTGTCCCGCGGGCATGAGTAGGGGGT
CCGGCAAATGGAACGACGATGATTTCCGCGGGGATGAGATAGCCTGGCTT
TCCATTTTGTCGCCCTCCAATCCCTCCGCCCCTTCACCCTCTTTTTCTTC
AGACACCTTTACCCCAAATAAAAGCTCGCCTTCAACCCTCTCCATCGCCC
CGCGCTCTGCCTTACACACCTTGCTCGGCCGTCTAGAAGAAATTAGGGAT
CGCATCGATATCCTCGACCGTGGTGGCCCCTCGCCTCCCTTGCTCAATCT
AGACAAATGCAAACGCCGCTCTATGCAGCTTGCCTATTACCCGGGAAATG
GGAAACGCTATGTGCGGCATCGTGATACGTTTCCGGGTGATATTCCAAAG
GAAGGGGGGGAGGGAGATGAAAGGAAAGACAAGGCGTTAGAGTCCGTGAG
GTGCCTAACGATGATTTACTACTTGAATGCTGACTGGACGCCCGAACAAG
GCGGGGAGCTTCGTCTTTTCCTGGGAGACGATGAGGGAGGAAGAGGACAC
CAGGATGGAAGGTTTTGGGACGTGGCTCCGATTTTGGATCGCCTCGTGGT
CTTTCGCAGGTAGGATTATTTGAGTGGCAGGAAATGAAGTGCAGGAGCTA
TCCTCCTACAGTAGTCGTCTCCCTCTCTTCTCCTCCTCTTAATCACACGC
TCAAATCCTTATTTCCTTTTCTGTTCACCACCCCAAAAAAGTGATGTGAT
CGAGCACGAAGTTCTTCCAGTGTACGGGCCCCGCTTTGCCCTGACCTGCT
GGTTCTACGGCCGCCCCACCAACACCCTCGGCCCCCTCCTTTCCTCATCC
ACTCCATCCCCCCTCGCCAGCCTCGCTATAGCCCTCCCCTCCTCCTCCTC
CGGTGCTACCTCTGCTGCTGCTACCATCTCCTCCTTCCTGGCCCCTCTTC
ACCCTTCCCTCAAACCGAAACTCAACCCCACCATCACAGTCCCGCCTCCC
CTTTCCCCCCCTTCCCGCCGGCCCCGAGGCTCCTTCTCCTCCGCCCCTCC
CCTGGACATAGAAGACGAAAGCCTGAATGAGGAAGTGGAAGAAGCGAGCA
TATTTGTGTCTATCGCCTCGTACCGTGACTCGGAGTGTCAACACACCTTA
CACAGTCTTTTCAAAACCGCCATGCGCCCCGAGCGAATTCACGTTGGCCT
CGTCCTTCAGTTTTCTGAAGAAGAGGACAAGGCTTGCTTCACCCATCCCC
TCCCTCCTTTGTGGGCAAATCAAGTCCGCACCCTCTCCCTTTCCCATCTG
GAGGCCGCGGGCCCCTGCTGGGCGCGTCATCTTGCCCAGGCCTTGCGACA
GGTACGTCTTCCTTCCTCCCTACTTTAACTCCTTTTTCCTTGAAAGGTGG
CATGTCTAATCCACATTTCCCTTCCTCCCTCCCTTCACGTTACGTTTCCT
CCTTGCCCCCAACATAGAATGAGCGTTACGTCCTGCAACTCGACTCTCAC
ATGCGCTTTCGTCCGGGATGGGACGTCTTCCTCCTTCAGACCCTCCTCCG
TTGTCCTACTCCTGCTCGCTCCATACTGACAACCTACCCGATAGGGTACA
CTCTTCCGTCAACCTGTCCTTCCGATACTCGGCCCACCCTTCTCTGTCCC
TCGGGCTTCGACTCTCACGGTAAGGTCGTCCTCAACGTCCATTTTCAATC
TTGATATGCTCTCAAGAGGGACATTCATGCTCCTCTTCCCTTTCTTCCTC
CATTGCAAGGAATGCTGAGGCAGACGGCCCGCCGATGCAAACAGCAGCAG
CATCTCGAGCAGCCCATCCCTTCTAAACTCTGGGCCAGCGGGTTCAACTT
TGCACCGGCCCAAGCCTGGGAGGAGGTGCCGTATGACCCGAACCTGCGGC
ATTTGTTCTTTGGAGAGGAAGTGAGTATGGCGGCGAGGCTGTGGACATGG
GGTTGGGATTTTTTTGCGCCTCCCGAGACAGTTTTATATCATTTGTGGTC
TCGCGACCATAGACCCTCTTTTAGGGAGCTTAAAACTGAGAAGTCGGAGG
ATGAGCAGATGAAGAGTATGATGAGGGTGCGGAAATTATTGGGGGAAGGG
ACAACGGCACAAAATGTGGAAGAACTGGGGAGGTACGGTTTGGGGAGCGT
GCGGTCGTTAAGGGAGTATGAGCGCTTGCTGGGGGTGAGTTTTGCACTTG
CTACAGTAACTTCAAGTAATGCCCAGTGGGGGGGGCAGCCGTCTGATTTC
TTTGAGAGCGGGAACGGAGCGATTGTAGGAGAGGGGAATAGTGAGGGCAG
AGGTAAGGAGCAGCACCACAGACAGCAGTCGGCGGCTGTGGAGGGGGTGG
TGAGGACGTCGTCATTGCAGGCCTTGGTAAATAGTTTCCTCTCTTGA back to topCoding sequence (CDS) from alignment at chr30:210156..212752+ >NO30G00540.1 ID=NO30G00540.1|Name=NO30G00540.1|organism=Nannochloropsis oceanica|type=CDS|length=2259bp|location=Sequence derived from alignment at chr30:210156..212752+ (Nannochloropsis oceanica) ATGGCAGTTCCGCAAGATGTCCTTGACACCATCACGCCGGCTGAGGTTCA CCTGCTGGCGCACCCGTCACCATCCTCCTCCTTTTTTGTGCGTGATGGTG CCTTCCTTCTCGCACCATCGCGCTCCAACGAGGAGGACGATTACGACGAC GAAGAGGCACGCCAAGAGGAGCAGGCCGTCCTCCTCCGTGAAGAAATCCG TACCATTCAAACACAGGGCAAACTTTGTCCCGCGGGCATGAGTAGGGGGT CCGGCAAATGGAACGACGATGATTTCCGCGGGGATGAGATAGCCTGGCTT TCCATTTTGTCGCCCTCCAATCCCTCCGCCCCTTCACCCTCTTTTTCTTC AGACACCTTTACCCCAAATAAAAGCTCGCCTTCAACCCTCTCCATCGCCC CGCGCTCTGCCTTACACACCTTGCTCGGCCGTCTAGAAGAAATTAGGGAT CGCATCGATATCCTCGACCGTGGTGGCCCCTCGCCTCCCTTGCTCAATCT AGACAAATGCAAACGCCGCTCTATGCAGCTTGCCTATTACCCGGGAAATG GGAAACGCTATGTGCGGCATCGTGATACGTTTCCGGGTGATATTCCAAAG GAAGGGGGGGAGGGAGATGAAAGGAAAGACAAGGCGTTAGAGTCCGTGAG GTGCCTAACGATGATTTACTACTTGAATGCTGACTGGACGCCCGAACAAG GCGGGGAGCTTCGTCTTTTCCTGGGAGACGATGAGGGAGGAAGAGGACAC CAGGATGGAAGGTTTTGGGACGTGGCTCCGATTTTGGATCGCCTCGTGGT CTTTCGCAGTGATGTGATCGAGCACGAAGTTCTTCCAGTGTACGGGCCCC GCTTTGCCCTGACCTGCTGGTTCTACGGCCGCCCCACCAACACCCTCGGC CCCCTCCTTTCCTCATCCACTCCATCCCCCCTCGCCAGCCTCGCTATAGC CCTCCCCTCCTCCTCCTCCGGTGCTACCTCTGCTGCTGCTACCATCTCCT CCTTCCTGGCCCCTCTTCACCCTTCCCTCAAACCGAAACTCAACCCCACC ATCACAGTCCCGCCTCCCCTTTCCCCCCCTTCCCGCCGGCCCCGAGGCTC CTTCTCCTCCGCCCCTCCCCTGGACATAGAAGACGAAAGCCTGAATGAGG AAGTGGAAGAAGCGAGCATATTTGTGTCTATCGCCTCGTACCGTGACTCG GAGTGTCAACACACCTTACACAGTCTTTTCAAAACCGCCATGCGCCCCGA GCGAATTCACGTTGGCCTCGTCCTTCAGTTTTCTGAAGAAGAGGACAAGG CTTGCTTCACCCATCCCCTCCCTCCTTTGTGGGCAAATCAAGTCCGCACC CTCTCCCTTTCCCATCTGGAGGCCGCGGGCCCCTGCTGGGCGCGTCATCT TGCCCAGGCCTTGCGACAGAATGAGCGTTACGTCCTGCAACTCGACTCTC ACATGCGCTTTCGTCCGGGATGGGACGTCTTCCTCCTTCAGACCCTCCTC CGTTGTCCTACTCCTGCTCGCTCCATACTGACAACCTACCCGATAGGGTA CACTCTTCCGTCAACCTGTCCTTCCGATACTCGGCCCACCCTTCTCTGTC CCTCGGGCTTCGACTCTCACGGAATGCTGAGGCAGACGGCCCGCCGATGC AAACAGCAGCAGCATCTCGAGCAGCCCATCCCTTCTAAACTCTGGGCCAG CGGGTTCAACTTTGCACCGGCCCAAGCCTGGGAGGAGGTGCCGTATGACC CGAACCTGCGGCATTTGTTCTTTGGAGAGGAAGTGAGTATGGCGGCGAGG CTGTGGACATGGGGTTGGGATTTTTTTGCGCCTCCCGAGACAGTTTTATA TCATTTGTGGTCTCGCGACCATAGACCCTCTTTTAGGGAGCTTAAAACTG AGAAGTCGGAGGATGAGCAGATGAAGAGTATGATGAGGGTGCGGAAATTA TTGGGGGAAGGGACAACGGCACAAAATGTGGAAGAACTGGGGAGGTACGG TTTGGGGAGCGTGCGGTCGTTAAGGGAGTATGAGCGCTTGCTGGGGGTGA GTTTTGCACTTGCTACAGTAACTTCAAGTAATGCCCAGTGGGGGGGGCAG CCGTCTGATTTCTTTGAGAGCGGGAACGGAGCGATTGTAGGAGAGGGGAA TAGTGAGGGCAGAGGTAAGGAGCAGCACCACAGACAGCAGTCGGCGGCTG TGGAGGGGGTGGTGAGGACGTCGTCATTGCAGGCCTTGGTAAATAGTTTC CTCTCTTGA back to top
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