NO30G00480.1, NO30G00480.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00480.1
Unique NameNO30G00480.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1419
Alignment locationchr30:196302..197720 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:196302..197720 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO30G00480.1 vs.
Match: EWM20586.1 (hypothetical protein Naga_100649g4, partial [Nannochloropsis gaditana])

HSP 1 Score: 661.4 bits (1705), Expect = 2.100e-186
Identity = 313/423 (74.00%), Postives = 351/423 (82.98%), Query Frame = 0 
Query:    1 MWALIATLLTYWRVFFYFWRSSGDFEGCPFLKREQDLPAKVHVYGLWLDLYLWDRPHYRAPTYRHDLLANLCNVAVPGTGLPLSFFCVAKPLAYLFFTLLYPVVAFLGAVNVARTAPKSQGKYAALTEAFREHLLTPEDWFNFWRLNSRIAAYHELLTHSPGYAQEDKWTFLMDGDRLGVPVSPVLKTASIVVKNKNEEGGLGIYFYKNALAGGDWIIQERLQNSDFLREHLLPPNAPLSTLRVITASRGGLTPDDPRVGRPATDEGFANLPANHIEALSCVFRAGRTGAATDHSSILFDVDVTTGLICEGSINAHWYELGVGKPFRTAWRSTYTTNTHPDAPGLVVTGRHIHADMAALRALVCRAHFLMLPDVPFVGWDVALTSTGEFLLEVNLSCNFFRGSFEKPRYFAFCRDYLVQLQKV 424
            MWAL+ TL TYWR  FYFW S+GDF GCP LK E +L AK+HVYG+WLDLYLW  PHYRAP+YRHDLLANL NVA+PGTG+PLS FCVAKP+A++FF  LYP+ A  GAVNVARTA   +GKYAAL  AF EHLL P+DWF++WRLNSR+AAYH++LT SPGYAQEDKWTFL +G RLGVPVSPVL+ ASIVVKNKNEEGGLGIYFY+NALAGGDWIIQERL+NSDFLR+HLLPP APLSTLRVITASRGGLTP DPR+G   TDEGF+ LP +HI+ALSCVFRAGR GAATDH+SILFDVD  TG + EGS NAHWY+LG+    RT WRS Y T  HPDAP   +TG  I  DM  +R LV RAHFLMLPDVP VGWDVALT+ G  LLEVNLSCNFFRG+F+K  YF FCRDYL  LQK+
Sbjct:    1 MWALLLTLATYWRALFYFWWSNGDFIGCPLLKGEVNLAAKIHVYGIWLDLYLWALPHYRAPSYRHDLLANLRNVALPGTGIPLSTFCVAKPVAWVFFLFLYPLAAMAGAVNVARTARGLRGKYAALAAAFHEHLLAPQDWFSYWRLNSRMAAYHQVLTGSPGYAQEDKWTFLREGARLGVPVSPVLEHASIVVKNKNEEGGLGIYFYRNALAGGDWIIQERLENSDFLRQHLLPPGAPLSTLRVITASRGGLTPADPRLGHAPTDEGFSALPVDHIQALSCVFRAGRAGAATDHASILFDVDAETGRVREGSTNAHWYQLGLRSIPRTPWRSRYRTAAHPDAPARPLTGLQI-PDMGGIRRLVRRAHFLMLPDVPLVGWDVALTTKGLVLLEVNLSCNFFRGTFQKGPYFQFCRDYLDVLQKL 422
The following BLAST results are available for this feature:
BLAST of NO30G00480.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM20586.12.100e-18674.00hypothetical protein Naga_100649g4, partial [Nanno... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00480NO30G00480Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00480.1NO30G00480.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00480.1.cds1NO30G00480.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00480.1 ID=NO30G00480.1|Name=NO30G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp
ATGTGGGCACTCATAGCCACATTGCTGACTTATTGGCGAGTATTTTTCTA
CTTTTGGCGTTCAAGCGGCGACTTTGAGGGCTGTCCGTTTCTGAAGCGCG
AGCAAGACTTGCCCGCCAAGGTGCACGTCTATGGCCTCTGGCTCGACCTG
TACCTGTGGGACCGACCGCATTACCGGGCGCCAACCTACCGTCATGACCT
CTTGGCGAATCTGTGCAACGTGGCGGTGCCGGGAACGGGCCTCCCCTTGA
GCTTTTTCTGCGTAGCCAAGCCCTTAGCCTACCTGTTCTTCACCCTTCTG
TACCCGGTGGTGGCCTTCCTGGGGGCGGTGAATGTGGCCCGCACGGCGCC
AAAGTCCCAGGGCAAGTACGCGGCTTTGACCGAGGCCTTTCGGGAGCATT
TATTGACACCTGAGGATTGGTTTAATTTCTGGCGGCTCAACTCCCGCATC
GCGGCCTACCATGAGCTGCTCACGCACAGCCCTGGCTACGCGCAGGAAGA
CAAATGGACCTTTTTGATGGACGGGGACCGGCTGGGTGTGCCCGTCTCGC
CCGTGCTCAAGACGGCAAGCATTGTGGTCAAGAACAAAAATGAGGAGGGT
GGCTTGGGCATCTACTTTTACAAAAATGCACTGGCCGGCGGGGACTGGAT
CATCCAAGAACGTCTCCAAAACTCGGACTTTCTCCGCGAGCACCTCCTCC
CGCCCAACGCCCCCCTCTCCACCCTCCGCGTCATCACCGCCTCCCGAGGC
GGCCTCACACCCGACGATCCCCGTGTGGGCCGGCCCGCCACCGACGAGGG
CTTTGCCAACTTGCCCGCCAACCACATCGAGGCGCTCTCCTGTGTCTTCA
GGGCAGGGCGAACAGGCGCCGCCACGGACCACTCCTCCATCCTCTTCGAT
GTGGATGTGACGACCGGCCTGATATGTGAAGGCTCCATCAACGCCCACTG
GTACGAGCTGGGTGTGGGGAAGCCCTTCCGCACGGCGTGGCGGTCCACCT
ACACCACAAACACGCACCCCGACGCGCCTGGCCTGGTGGTGACGGGGCGG
CACATCCACGCGGACATGGCGGCCTTGCGCGCTCTTGTCTGCCGGGCCCA
CTTCTTGATGCTGCCTGACGTGCCTTTCGTGGGATGGGACGTGGCGCTCA
CTAGCACGGGGGAGTTCTTGTTGGAGGTGAATTTGTCGTGCAACTTCTTC
AGGGGCTCGTTCGAGAAGCCTCGGTACTTCGCTTTCTGTCGCGACTACCT
GGTTCAGCTGCAGAAGGTGCGGCGGCAGGCAGAGGGGGGGAGAAGAAGGA
GAGATGAATCAAGGGGACAGGAAAGTCTTGCTTCTCGTAGACTGACACGT
ATGACTACAGTCTCGAGAGGTGGGCCAGAGGCACGTGTACCGGCCGCTTG
TGAGCTCTGTGCCACCTGA
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protein sequence of NO30G00480.1

>NO30G00480.1-protein ID=NO30G00480.1-protein|Name=NO30G00480.1|organism=Nannochloropsis oceanica|type=polypeptide|length=473bp
MWALIATLLTYWRVFFYFWRSSGDFEGCPFLKREQDLPAKVHVYGLWLDL
YLWDRPHYRAPTYRHDLLANLCNVAVPGTGLPLSFFCVAKPLAYLFFTLL
YPVVAFLGAVNVARTAPKSQGKYAALTEAFREHLLTPEDWFNFWRLNSRI
AAYHELLTHSPGYAQEDKWTFLMDGDRLGVPVSPVLKTASIVVKNKNEEG
GLGIYFYKNALAGGDWIIQERLQNSDFLREHLLPPNAPLSTLRVITASRG
GLTPDDPRVGRPATDEGFANLPANHIEALSCVFRAGRTGAATDHSSILFD
VDVTTGLICEGSINAHWYELGVGKPFRTAWRSTYTTNTHPDAPGLVVTGR
HIHADMAALRALVCRAHFLMLPDVPFVGWDVALTSTGEFLLEVNLSCNFF
RGSFEKPRYFAFCRDYLVQLQKVRRQAEGGRRRRDESRGQESLASRRLTR
MTTVSRGGPEARVPAACELCAT*
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mRNA from alignment at chr30:196302..197720+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00480.1 ID=NO30G00480.1|Name=NO30G00480.1|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at chr30:196302..197720+ (Nannochloropsis oceanica)
ATGTGGGCACTCATAGCCACATTGCTGACTTATTGGCGAGTATTTTTCTA
CTTTTGGCGTTCAAGCGGCGACTTTGAGGGCTGTCCGTTTCTGAAGCGCG
AGCAAGACTTGCCCGCCAAGGTGCACGTCTATGGCCTCTGGCTCGACCTG
TACCTGTGGGACCGACCGCATTACCGGGCGCCAACCTACCGTCATGACCT
CTTGGCGAATCTGTGCAACGTGGCGGTGCCGGGAACGGGCCTCCCCTTGA
GCTTTTTCTGCGTAGCCAAGCCCTTAGCCTACCTGTTCTTCACCCTTCTG
TACCCGGTGGTGGCCTTCCTGGGGGCGGTGAATGTGGCCCGCACGGCGCC
AAAGTCCCAGGGCAAGTACGCGGCTTTGACCGAGGCCTTTCGGGAGCATT
TATTGACACCTGAGGATTGGTTTAATTTCTGGCGGCTCAACTCCCGCATC
GCGGCCTACCATGAGCTGCTCACGCACAGCCCTGGCTACGCGCAGGAAGA
CAAATGGACCTTTTTGATGGACGGGGACCGGCTGGGTGTGCCCGTCTCGC
CCGTGCTCAAGACGGCAAGCATTGTGGTCAAGAACAAAAATGAGGAGGGT
GGCTTGGGCATCTACTTTTACAAAAATGCACTGGCCGGCGGGGACTGGAT
CATCCAAGAACGTCTCCAAAACTCGGACTTTCTCCGCGAGCACCTCCTCC
CGCCCAACGCCCCCCTCTCCACCCTCCGCGTCATCACCGCCTCCCGAGGC
GGCCTCACACCCGACGATCCCCGTGTGGGCCGGCCCGCCACCGACGAGGG
CTTTGCCAACTTGCCCGCCAACCACATCGAGGCGCTCTCCTGTGTCTTCA
GGGCAGGGCGAACAGGCGCCGCCACGGACCACTCCTCCATCCTCTTCGAT
GTGGATGTGACGACCGGCCTGATATGTGAAGGCTCCATCAACGCCCACTG
GTACGAGCTGGGTGTGGGGAAGCCCTTCCGCACGGCGTGGCGGTCCACCT
ACACCACAAACACGCACCCCGACGCGCCTGGCCTGGTGGTGACGGGGCGG
CACATCCACGCGGACATGGCGGCCTTGCGCGCTCTTGTCTGCCGGGCCCA
CTTCTTGATGCTGCCTGACGTGCCTTTCGTGGGATGGGACGTGGCGCTCA
CTAGCACGGGGGAGTTCTTGTTGGAGGTGAATTTGTCGTGCAACTTCTTC
AGGGGCTCGTTCGAGAAGCCTCGGTACTTCGCTTTCTGTCGCGACTACCT
GGTTCAGCTGCAGAAGGTGCGGCGGCAGGCAGAGGGGGGGAGAAGAAGGA
GAGATGAATCAAGGGGACAGGAAAGTCTTGCTTCTCGTAGACTGACACGT
ATGACTACAGTCTCGAGAGGTGGGCCAGAGGCACGTGTACCGGCCGCTTG
TGAGCTCTGTGCCACCTGA
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Coding sequence (CDS) from alignment at chr30:196302..197720+

>NO30G00480.1 ID=NO30G00480.1|Name=NO30G00480.1|organism=Nannochloropsis oceanica|type=CDS|length=1419bp|location=Sequence derived from alignment at chr30:196302..197720+ (Nannochloropsis oceanica)
ATGTGGGCACTCATAGCCACATTGCTGACTTATTGGCGAGTATTTTTCTA
CTTTTGGCGTTCAAGCGGCGACTTTGAGGGCTGTCCGTTTCTGAAGCGCG
AGCAAGACTTGCCCGCCAAGGTGCACGTCTATGGCCTCTGGCTCGACCTG
TACCTGTGGGACCGACCGCATTACCGGGCGCCAACCTACCGTCATGACCT
CTTGGCGAATCTGTGCAACGTGGCGGTGCCGGGAACGGGCCTCCCCTTGA
GCTTTTTCTGCGTAGCCAAGCCCTTAGCCTACCTGTTCTTCACCCTTCTG
TACCCGGTGGTGGCCTTCCTGGGGGCGGTGAATGTGGCCCGCACGGCGCC
AAAGTCCCAGGGCAAGTACGCGGCTTTGACCGAGGCCTTTCGGGAGCATT
TATTGACACCTGAGGATTGGTTTAATTTCTGGCGGCTCAACTCCCGCATC
GCGGCCTACCATGAGCTGCTCACGCACAGCCCTGGCTACGCGCAGGAAGA
CAAATGGACCTTTTTGATGGACGGGGACCGGCTGGGTGTGCCCGTCTCGC
CCGTGCTCAAGACGGCAAGCATTGTGGTCAAGAACAAAAATGAGGAGGGT
GGCTTGGGCATCTACTTTTACAAAAATGCACTGGCCGGCGGGGACTGGAT
CATCCAAGAACGTCTCCAAAACTCGGACTTTCTCCGCGAGCACCTCCTCC
CGCCCAACGCCCCCCTCTCCACCCTCCGCGTCATCACCGCCTCCCGAGGC
GGCCTCACACCCGACGATCCCCGTGTGGGCCGGCCCGCCACCGACGAGGG
CTTTGCCAACTTGCCCGCCAACCACATCGAGGCGCTCTCCTGTGTCTTCA
GGGCAGGGCGAACAGGCGCCGCCACGGACCACTCCTCCATCCTCTTCGAT
GTGGATGTGACGACCGGCCTGATATGTGAAGGCTCCATCAACGCCCACTG
GTACGAGCTGGGTGTGGGGAAGCCCTTCCGCACGGCGTGGCGGTCCACCT
ACACCACAAACACGCACCCCGACGCGCCTGGCCTGGTGGTGACGGGGCGG
CACATCCACGCGGACATGGCGGCCTTGCGCGCTCTTGTCTGCCGGGCCCA
CTTCTTGATGCTGCCTGACGTGCCTTTCGTGGGATGGGACGTGGCGCTCA
CTAGCACGGGGGAGTTCTTGTTGGAGGTGAATTTGTCGTGCAACTTCTTC
AGGGGCTCGTTCGAGAAGCCTCGGTACTTCGCTTTCTGTCGCGACTACCT
GGTTCAGCTGCAGAAGGTGCGGCGGCAGGCAGAGGGGGGGAGAAGAAGGA
GAGATGAATCAAGGGGACAGGAAAGTCTTGCTTCTCGTAGACTGACACGT
ATGACTACAGTCTCGAGAGGTGGGCCAGAGGCACGTGTACCGGCCGCTTG
TGAGCTCTGTGCCACCTGA
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Synonyms
Publications