NO30G00330.1, NO30G00330.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00330.1
Unique Name	NO30G00330.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2259
Alignment location	chr30:132401..135859 -

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:132401..135859 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO30G00330.1 vs.
Match: CCI40930.1 (unnamed protein product [Albugo candida])

HSP 1 Score: 122.1 bits (305), Expect = 3.600e-24
Identity = 56/108 (51.85%), Postives = 76/108 (70.37%), Query Frame = 0

Query:    1 MSPERIDGQDYSYASDVWSLGLALMTVALGKLPISTKAGYWSILQSVRDEPPPTLPEGHWSPLFRDFLSRFLRKDPASRPPCSSLLLHPWLEQARSQHHSGGCVTAVP 109
            MSPERI  ++YSY SDVWSLGL+++T ALGK P S+K GYW +L  +R+EPPP LP+  +S  FRDF+++ L K+ A R     LLLHP++ Q+  ++H   C TA P
Sbjct:  771 MSPERIASEEYSYKSDVWSLGLSILTCALGKFPYSSKNGYWELLHKIRNEPPPMLPKDSFSNTFRDFMAKCLAKNEAERWTVQQLLLHPFVRQSSRKNH---CSTANP 875

The following BLAST results are available for this feature:

BLAST of NO30G00330.1 vs.

BLAST of NO30G00330.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
CCI40930.1	3.600e-24	51.85	unnamed protein product [Albugo candida]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00330	NO30G00330	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00330.1	NO30G00330.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00330.1.cds1	NO30G00330.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00330.1.cds2	NO30G00330.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00330.1.cds3	NO30G00330.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00330.1.cds4	NO30G00330.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00330.1.cds5	NO30G00330.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00330.1.cds6	NO30G00330.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO30G00330.1.cds7	NO30G00330.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:132401..135859-
coding sequence from alignment at chr30:132401..135859-

mRNA sequence

>NO30G00330.1 ID=NO30G00330.1|Name=NO30G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=2259bp
GGAGGGAGGGAGGGAAGGAAAGAGGGAGGAAGGGAGGGAGGGAGAGGTCT
TAAATAAAGCTTCTCTCCCCTGTCGTCACCTCTTCCTCCCTCCCTCCTCC
CCTCCCTCCCCTCAGGCACGGTGACATACATGTCTCCCGAGAGGATCGAT
GGACAAGACTACAGCTACGCATCCGACGTATGGAGTCTGGGCTTGGCCCT
CATGACCGTCGCGCTCGGCAAGCTCCCCATCTCCACCAAGGCCGGGTATT
GGTCTATTTTGCAGTCTGTCAGAGACGAGCCTCCGCCGACACTTCCCGAG
GGCCACTGGTCCCCGCTCTTCCGCGACTTCCTCTCTCGCTTCCTCCGAAA
GGATCCGGCTTCCCGCCCTCCCTGCTCCTCCCTCCTCCTCCACCCCTGGC
TCGAGCAAGCGCGAAGCCAACACCACAGCGGCGGCTGCGTGACTGCCGTC
CCTCTGCACGGTGACAACCAAACGTCCCGGGAGACAGAGGCAAAGGAAGA
ATTGAGAGCCATCGTTTCAGCTGTCAAAGAACACGTTGCAGGCGTCCTGA
GGGAAGAGAGCGCCGTCATCACTTCATCGCTGTCCTCTTCCTCTTCTTCC
TTCTCAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGGGCATGTCCC
CCCTCCTTACCACCGTCAGTTCTCCTCCCTCGTCGTGCTCGCCAACGATG
ACCTCCTACAGCAACACCTCTACACCTCCACGCCCAGGGCCAGCGAGGGC
CGCCGTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCATCCTCCCTCCAC
CCTGAGCCCTCGTGGACATGAAGGAGAAGAAGGAGGAGGTGGAGGAGGCA
AAGCTGTCCCTCCTCCTTCTCCCCCTCCCTCCGCTGTCACCACAGCCAAC
CCTCCTGGACTGATTTCCCAAGAAGGGGAAGACGGGAGGGAGGGAGGGGG
GGAGGGAGGGCAGACGTTCTCGTTCTGTAGCCCTCCACTGTCTCCTTCTC
CCTCTGTGCAGCTGTCGGCCGATAACGTGGGGGTGGATGACATGCTGAGG
AAAATTCTCTTGGAGAGGGGCGAGGGTCGCCTGTATGAGTTCGCGGCACA
GCTTCGGATGGAACCTCGTCTCGTAGTGAAGGAAATTGAAGGAATCCTCC
TCGCTGCTGCTGCCGGTACTGGTGGGGGTGGGAGCCTTTCCTCTGCCCCT
CCCTTGTCATCTTCCTCTTCGTTGCCTCCTCCGTTGTAGGGGATGGGTGG
TGCCGGAGGGAAATGAGGGGGGGTAAGAGGATACAAAGGTAATGATAGTG
GTGGTGGAGGAGGAGGAGGTGGCGGAGGAGGAAGAGGAGGAGGATCGCTG
TAGCCTTATGTGAGAATGAAGGAGTAAATTAGAGGAGAAGGAGGATTAAA
AGAACGACAGGGAGGGGGAAATGGATAGAAAGGAAGAGGAGGGAAAGTGA
GCGAGAAAGAGAGGAGGGAAACGTGGCGGGAAGAGAGCGAAGTGACAATA
ATGTGTACAGCTGTAAGATAGAGAGATATTAGGGCAATTTCAAAAAGAAG
AAGTATCTCGTGTTTTGTGTCTGCTTTTATCCTTCGTGGGGGTAGTCCTC
GCTCATGTACTCGTGATGAGTGCCTGGGTAGATGAGAGAAGAGAAGGAAG
GGTCCTCTGAATTCCTTATTCTTCCACTCGCTTGCCTTATGTCCTTGATT
CTCTATATCCCTTATTCAGCTTAACTGTTTGTGCCTTCGTTGAGCCTGCA
GGGAGGAATGCATGGGAGAGTGGGCAAGGAAGGTTTATTTCGGAGAGTTT
CGGAAGCTTTTTATTTTGTCCCCCTACTTTAAGGGGTCTCTTGCTTTATG
CTATTTTTACAGTATATGACTGCGGACGTGTGTAGATAGGAGGGAATGTC
TCACATTTGCGGGCTTAGTGGTGGGCTGGAGAAGCGATAAGGAGAGGAGC
TCAGTCCAGAGGAGCTGCGCGCTGGAGTGAGGGACAAATTTCATTGATGG
AGCACCGGAATATACCGACAGAATAGAATGTATATAAATCATCGGTAACT
GCGGTTGCATGTCCTTTTCCTCGTCTTGCAGGTCGCCTACGTGTGGTGCA
TAAAAGTGGAATGGCCCTACGTTCCTTCCTCGTGCTTCAAATGACCTCCT
GCCTTTCCTTCCTCCCTCCCTCCCTTCCATTTCCTGTCCGCATGCATACC
GACACAACGTTCCCTTCGATCACACACACATACGTAGAGGCACGACACAA
GCATCGACG

protein sequence of NO30G00330.1

>NO30G00330.1-protein ID=NO30G00330.1-protein|Name=NO30G00330.1|organism=Nannochloropsis oceanica|type=polypeptide|length=370bp
MSPERIDGQDYSYASDVWSLGLALMTVALGKLPISTKAGYWSILQSVRDE
PPPTLPEGHWSPLFRDFLSRFLRKDPASRPPCSSLLLHPWLEQARSQHHS
GGCVTAVPLHGDNQTSRETEAKEELRAIVSAVKEHVAGVLREESAVITSS
LSSSSSSFSGREGGREGGRGGHVPPPYHRQFSSLVVLANDDLLQQHLYTS
TPRASEGRRPSLPPSLPLSHPPSTLSPRGHEGEEGGGGGGKAVPPPSPPP
SAVTTANPPGLISQEGEDGREGGGEGGQTFSFCSPPLSPSPSVQLSADNV
GVDDMLRKILLERGEGRLYEFAAQLRMEPRLVVKEIEGILLAAAAGTGGG
GSLSSAPPLSSSSSLPPPL*

mRNA from alignment at chr30:132401..135859-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00330.1 ID=NO30G00330.1|Name=NO30G00330.1|organism=Nannochloropsis oceanica|type=mRNA|length=3459bp|location=Sequence derived from alignment at chr30:132401..135859- (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAAGGAAAGAGGGAGGAAGGGAGGGAGGGAGAGGTCT
TAAATAAAGCTTCTCTCCCCTGTCGTCACCTCTTCCTCCCTCCCTCCTCC
CCTCCCTCCCCTCAGGCACGGTGACATACATGTCTCCCGAGAGGATCGAT
GGACAAGACTACAGCTACGCATCCGACGTATGGAGGTAGGATCTCTGCCC
TCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCTTCTCTCTTCTCCTC
CCCTTCTCCCTTCCTTCCTTGTCCACTTGCCTACAAGCTGATGGTTCTCT
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCAGTCTGGGCTTGGCCCTCATGACCGTCGCGCTCGGCAAGCTCCC
CATCTCCACCAAGGCCGGGTACGCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTTTCCTCGAGCTCTCTCAC
CCATCCCCCTCCCTTCTCTCCCTTCCCTTCCTCCCTTCCTCCCTCTCCAT
CAGGTATTGGTCTATTTTGCAGTCTGTCAGAGACGAGCCTCCGCCGACAC
TTCCCGAGGGTGAGCAAAAGGGAGGAAGGGAGGGAGGGAGGGAGAGAGGG
AGGGAGAGAGGGAAGAATTGAGAGGAGAAATAGATTAGAAGAGTGTAAAT
TTCCTCCTCTTTTTGTTCGCCCTGGCCACGCTTTCGATGCCCTCCCTCCC
TCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCA
TCAGGCCACTGGTCCCCGCTCTTCCGCGACTTCCTCTCTCGCTTCCTCCG
AAAGGATCCGGCTTCCCGCCCTCCCTGCTCCTCCCTCCTCCTCCACCCCT
GGCTCGAGCAAGCGCGAAGCCAACACCACAGCGGCGGCTGCGTGACTGCC
GGTACGTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTGCTCGACGAT
GTCCGCACTACCCAAAGTGAGAGGCTTAGAGAGACCTCACCCTCCCTCCC
TCGCTCCTGCAGTCCCTCTGCACGGTGACAACCAAACGTCCCGGGAGACA
GAGGCAAAGGAAGAATTGAGAGCCATCGTTTCAGCTGTCAAAGAACACGT
TGCAGGCGTCCTGAGGGAAGAGAGGTAGGGAAGGAGGGGGGGGGAGGGAG
GGCGCCGGCAGTCAAAGAAAAAAAGAGCGCGAAGGAGGGGAAAGATATAG
GTAGGGGAGGAGGGAGGGTGGGAAGGGGTGGTAAGAAGGAGGAAGGGGGG
GAAGGAGGGCTAGATAGAAGCATACAGAAGGGAGGGAGGGAAGGAGGGAG
GAAAGGAAGCATAGGACGGAAGGAGGGAGGGAGGGAGGCAGGGAGGGAAG
GAAGGAGGGAGGGCGACTCTCTTTGGCATCCACAACTCCTTTTGTCATCA
CTTCAGACTCTAACTTTCCCTCCCTCCCTCTCTCCCTCCCCCTTTCCCTC
CTCAAGCGCCGTCATCACTTCATCGCTGTCCTCTTCCTCTTCTTCCTTCT
CAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGGTGGGCATGTCCCCCCT
CCTTACCACCGTCAGTTCTCCTCCCTCGTCGTGCTCGCCAACGATGACCT
CCTACAGCAACACCTCTACACCTCCACGCCCAGGGCCAGCGAGGGCCGCC
GTCCCTCTCTCCCTCCCTCCCTCCCTCTCTCCCATCCTCCCTCCACCCTG
AGCCCTCGTGGACATGAAGGAGAAGAAGGAGGAGGTGGAGGAGGCAAAGC
TGTCCCTCCTCCTTCTCCCCCTCCCTCCGCTGTCACCACAGCCAACCCTC
CTGGACTGATTTCCCAAGAAGGGGAAGACGGGAGGGAGGGAGGGGGGGAG
GGAGGGCAGACGTTCTCGTTCTGTAGCCCTCCACTGTCTCCTTCTCCCTC
TGTGCAGCTGTCGGCCGATAACGTGGGGGTGGATGACATGCTGAGGAAAA
TTCTCTTGGAGAGGTATAGAGGGAGGGAGGGAGGGAGAGAGGGAGGAAGG
GAGGGAGGGAGGGAAGAAGGGAGGGAAGAAGGGAGGGAGGGAGGGGGGGG
GCGGAGGGAGGAAGGAGAGGTGTACATTTTCAATTGATTCTTCTACACGA
CTTGATCCCTCCCTCCCTCCCTCCCTCTCTCCCTCTCTCTCTCCCTCCCT
CTGTCCTTCCCTCCCAGGGGCGAGGGTCGCCTGTATGAGTTCGCGGCACA
GCTTCGGATGGAACCTCGTCTCGTAGTGAAGGAAATTGAAGGAATCCTCC
TCGCTGCTGCTGCCGGTACTGGTGGGGGTGGGAGCCTTTCCTCTGCCCCT
CCCTTGTCATCTTCCTCTTCGTTGCCTCCTCCGTTGTAGGGGATGGGTGG
TGCCGGAGGGAAATGAGGGGGGGTAAGAGGATACAAAGGTAATGATAGTG
GTGGTGGAGGAGGAGGAGGTGGCGGAGGAGGAAGAGGAGGAGGATCGCTG
TAGCCTTATGTGAGAATGAAGGAGTAAATTAGAGGAGAAGGAGGATTAAA
AGAACGACAGGGAGGGGGAAATGGATAGAAAGGAAGAGGAGGGAAAGTGA
GCGAGAAAGAGAGGAGGGAAACGTGGCGGGAAGAGAGCGAAGTGACAATA
ATGTGTACAGCTGTAAGATAGAGAGATATTAGGGCAATTTCAAAAAGAAG
AAGTATCTCGTGTTTTGTGTCTGCTTTTATCCTTCGTGGGGGTAGTCCTC
GCTCATGTACTCGTGATGAGTGCCTGGGTAGATGAGAGAAGAGAAGGAAG
GGTCCTCTGAATTCCTTATTCTTCCACTCGCTTGCCTTATGTCCTTGATT
CTCTATATCCCTTATTCAGCTTAACTGTTTGTGCCTTCGTTGAGCCTGCA
GGGAGGAATGCATGGGAGAGTGGGCAAGGAAGGTTTATTTCGGAGAGTTT
CGGAAGCTTTTTATTTTGTCCCCCTACTTTAAGGGGTCTCTTGCTTTATG
CTATTTTTACAGTATATGACTGCGGACGTGTGTAGATAGGAGGGAATGTC
TCACATTTGCGGGCTTAGTGGTGGGCTGGAGAAGCGATAAGGAGAGGAGC
TCAGTCCAGAGGAGCTGCGCGCTGGAGTGAGGGACAAATTTCATTGATGG
AGCACCGGAATATACCGACAGAATAGAATGTATATAAATCATCGGTAACT
GCGGTTGCATGTCCTTTTCCTCGTCTTGCAGGTCGCCTACGTGTGGTGCA
TAAAAGTGGAATGGCCCTACGTTCCTTCCTCGTGCTTCAAATGACCTCCT
GCCTTTCCTTCCTCCCTCCCTCCCTTCCATTTCCTGTCCGCATGCATACC
GACACAACGTTCCCTTCGATCACACACACATACGTAGAGGCACGACACAA
GCATCGACG

Coding sequence (CDS) from alignment at chr30:132401..135859-

>NO30G00330.1 ID=NO30G00330.1|Name=NO30G00330.1|organism=Nannochloropsis oceanica|type=CDS|length=1110bp|location=Sequence derived from alignment at chr30:132401..135859- (Nannochloropsis oceanica)
ATGTCTCCCGAGAGGATCGATGGACAAGACTACAGCTACGCATCCGACGT
ATGGAGTCTGGGCTTGGCCCTCATGACCGTCGCGCTCGGCAAGCTCCCCA
TCTCCACCAAGGCCGGGTATTGGTCTATTTTGCAGTCTGTCAGAGACGAG
CCTCCGCCGACACTTCCCGAGGGCCACTGGTCCCCGCTCTTCCGCGACTT
CCTCTCTCGCTTCCTCCGAAAGGATCCGGCTTCCCGCCCTCCCTGCTCCT
CCCTCCTCCTCCACCCCTGGCTCGAGCAAGCGCGAAGCCAACACCACAGC
GGCGGCTGCGTGACTGCCGTCCCTCTGCACGGTGACAACCAAACGTCCCG
GGAGACAGAGGCAAAGGAAGAATTGAGAGCCATCGTTTCAGCTGTCAAAG
AACACGTTGCAGGCGTCCTGAGGGAAGAGAGCGCCGTCATCACTTCATCG
CTGTCCTCTTCCTCTTCTTCCTTCTCAGGAAGGGAGGGAGGGAGGGAGGG
AGGGAGGGGTGGGCATGTCCCCCCTCCTTACCACCGTCAGTTCTCCTCCC
TCGTCGTGCTCGCCAACGATGACCTCCTACAGCAACACCTCTACACCTCC
ACGCCCAGGGCCAGCGAGGGCCGCCGTCCCTCTCTCCCTCCCTCCCTCCC
TCTCTCCCATCCTCCCTCCACCCTGAGCCCTCGTGGACATGAAGGAGAAG
AAGGAGGAGGTGGAGGAGGCAAAGCTGTCCCTCCTCCTTCTCCCCCTCCC
TCCGCTGTCACCACAGCCAACCCTCCTGGACTGATTTCCCAAGAAGGGGA
AGACGGGAGGGAGGGAGGGGGGGAGGGAGGGCAGACGTTCTCGTTCTGTA
GCCCTCCACTGTCTCCTTCTCCCTCTGTGCAGCTGTCGGCCGATAACGTG
GGGGTGGATGACATGCTGAGGAAAATTCTCTTGGAGAGGGGCGAGGGTCG
CCTGTATGAGTTCGCGGCACAGCTTCGGATGGAACCTCGTCTCGTAGTGA
AGGAAATTGAAGGAATCCTCCTCGCTGCTGCTGCCGGTACTGGTGGGGGT
GGGAGCCTTTCCTCTGCCCCTCCCTTGTCATCTTCCTCTTCGTTGCCTCC
TCCGTTGTAG

Synonyms

Publications