NO30G00310.1, NO30G00310.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00310.1
Unique NameNO30G00310.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length675
Alignment locationchr30:126987..129367 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:126987..129367 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO30G00310.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00310NO30G00310Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00310.1NO30G00310.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00310.1.cds1NO30G00310.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds2NO30G00310.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds3NO30G00310.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds4NO30G00310.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds5NO30G00310.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds6NO30G00310.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds7NO30G00310.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds8NO30G00310.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00310.1.cds9NO30G00310.1.cds9Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00310.1 ID=NO30G00310.1|Name=NO30G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=675bp
ATGAAAAAACCTTCGCCGCGTGGCGCTGCCGGTGCCTCCTTTGTCTTCGT
GTGCGTCTTCCTGTTCTCGTCTTCTTCCGTCCTCGTCGATGGCAGTGCTC
TCCGTGGTTCTAGTGAGTCCCTCCTTCTTGACGACGGTGACGCGGGTGCA
TTAAAAGAGCCTCCTTTAGCGTACTTCCCCCATCATGGGGATGACCGAGA
GAATAGCGGGCGGCGAGTGCGAGGTCTGTCCAACCGCGCACTCGCCCCCA
TCTCCCCCGAGCTCGTGAAGGAGGAGAACCAAGGCTACGTCGAAGCAAAG
ACTTCTCCTATAGTGGTTAAGGCCCCGGAAGAGGCCGCCAAGGATCCTCT
CCGTCTCCCCGGAGGCAAGCAGGGCCCTGTCGAAGGCGCCAAGGATCCTC
TCCGTCTCCCCGGAGGCAAGCAGGGCCCTGTCGAAGGCGCCAAGGATCCT
CTCCGTCTCCCCGGAGGCAAGCAGGGCCCTGTTGAAGGCGCCAAGGATCC
TCTCCGTCTCCCCGGAGGCAAGCAGGGCCCTGTTGAAGGCGCCAAGGATC
CTCTCCGTCTCCCCGGAGGCAAGCAGGCCCCTGTGATGGAAAAGGCCAAC
GTCCAAAAGGAGGCCGTGCGCGAGATTGACGACAAGAAGGGAGGGAAAGA
GGAAGGGAATGCGGGAGAACCGTAG
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protein sequence of NO30G00310.1

>NO30G00310.1-protein ID=NO30G00310.1-protein|Name=NO30G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=225bp
MKKPSPRGAAGASFVFVCVFLFSSSSVLVDGSALRGSSESLLLDDGDAGA
LKEPPLAYFPHHGDDRENSGRRVRGLSNRALAPISPELVKEENQGYVEAK
TSPIVVKAPEEAAKDPLRLPGGKQGPVEGAKDPLRLPGGKQGPVEGAKDP
LRLPGGKQGPVEGAKDPLRLPGGKQGPVEGAKDPLRLPGGKQAPVMEKAN
VQKEAVREIDDKKGGKEEGNAGEP*
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mRNA from alignment at chr30:126987..129367+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00310.1 ID=NO30G00310.1|Name=NO30G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp|location=Sequence derived from alignment at chr30:126987..129367+ (Nannochloropsis oceanica)
ATGAAAAAACCTTCGCCGCGTGGCGCTGCCGGTGCCTCCTTTGTCTTCGT
GTGCGTCTTCCTGTTCTCGTCTTCTTCCGTCCTCGTCGATGGCAGTGCTC
TCCGTGGTTCTAGTGAGGTACGTCTAATTTTGTCAGTAATACTACATGTG
GGTGTATGTGTATGTGCACGGGAGGGAGAGAGAGACGGAGGAGGACTGTG
GTGCGTGGCTTGCACCAGCATGACAAGGGTACACTCCCTCGAAGCGAGGG
AGTCGGGGATTGCCTGATACGGAGAAAATCTCGTAAGACAAAAAGAGAGG
AGGAAAAGCTATAGCACAGGCATGAAAATTGTGTGTGCAAATGTCTATGA
GTGCTCGTGTGTGCCTCTGCGTATGTGTGAGGAGGAAAGAATAGAGGGGA
AAACTAGGAGGAAGGTAAAGAGAAAGGTCTCCCCCTTTTCAGCGCAAGTG
CCGCCCCCTTCATTCTCTCTCTGTTTTACCACGACTCCCGGCCCTCCATC
CCTCCATCACTTTTCCCTCCCTTCTTTCCCCTCTTCCACTCGTCGCCCCT
CTTGTCCAGTGAACAACCTTCAATATCTTCTACCATACAAGCAATCCACA
CTCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCGTGCAG
TCCCTCCTTCTTGACGACGGTGACGCGGGTGCATTAAAAGAGCCTCCTTT
AGCGTACTTCCCCCATCATGGGGATGACCGAGAGAATAGCGGGCGGCGAG
TGCGAGGTACGTCTCTCCCTTTTTTTGCTCCCTCTTTCCCTCCCTCCTTC
CCCTGTTCCCCTACTTGCTTGCCTGTCTCCCTCCCTTCCCGTCTTCTACC
CTTCTTATCCCCCCCCTGTTCTCGTCATGGATGCGTCTACATCTTTTTTC
TTCTCCTACTTCCACATGTCCGTGCTCCAGCTCACCCTCCCTCCTTTCTC
CCTCCTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCAGGTCTGTCCAA
CCGCGCACTCGCCCCCATCTCCCCCGAGCTCGTGAAGGAGGAGAACCAAG
GCTACGTCGAAGTAAGTGTGAATCCTCCTTCCTTCCCTCCCTCCGTTCCT
ATCATCCTGCACTCTGTTCTACTTGCTCACATCCCCCCCCCCGCCCTCCC
TCCCGCCCTCCATCTCTCCCTCTCTCCCCGGCAGGCAAAGACTTCTCCTA
TAGTGGTTAAGGCCCCGGAAGAGGCCGCCAAGGATCCTCTCCGTCTCCCC
GGAGGCAAGCAGGTACGTACCTGCCCTCTTCCTCTCCCTCTCTCTTCCGT
GTCATCTGTCTTTATCTCACCCTCCCTCTCTCTGTCCCTCCCTCCCTCCG
TCCGTCCCTCCCTCCCTCCCAGGGCCCTGTCGAAGGCGCCAAGGATCCTC
TCCGTCTCCCCGGAGGCAAGCAGGTACGTGCTTGCCCTCTATCCCTCCCT
CCCTCCTTCCCTCCCTCCCTCTTCTGTATCACTTGTCTTAATCTTATCCT
AACCTCCTCACCCCCCCTCCTCCGTCCCTCCCTCCCTCCCTCGCAGGGCC
CTGTCGAAGGCGCCAAGGATCCTCTCCGTCTCCCCGGAGGCAAGCAGGTA
CGTGCTTTCCCTCTATCCCTCCCTCCGTCCCTCCCTCCCTCTCTCAACTG
TATCACTTGTCTAAATCTTATCCTACCCTCCTCACCCCCCCTCCTCCGTC
CCTCCCTCCCTCCTCCCCCAGGGCCCTGTCGAAGGCGCCAAGGATCCTCT
CCGTCTCCCCGGAGGCAAGCAGGTACGTGCTTGCCCTCTATCCCTCCCTC
CGTCCCTCCCTCCCTCCCTCTTCTGTATCACTTGTCTGAATCTTATCCTA
ACCTCCTCCCCCCGCCTCCTTCGTCCCTCCCTCCCTCCCTCCCAGGGCCC
TGTTGAAGGCGCCAAGGATCCTCTCCGTCTCCCCGGAGGCAAGCAGGTAC
GTGCTTGCCCTCTATCCCTCCCTCCGTCCCTCCCTCCCTCCCTCTTCTGT
ATCACTTGTCTAAATCTTATCCTAACCTCCTCACCCCCCCTCCTCCGTCC
CTCCCTCCCTCCCTCCCAGGGCCCTGTTGAAGGCGCCAAGGATCCTCTCC
GTCTCCCCGGAGGCAAGCAGGTACGTACCTGCCCTCTCTCTATTCCCCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCATCTC
GCTCCCAATCTCCTCATCTTTTTACCCGTGCGCCCTCCCTCCCCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCGTCCATCAGGCCCCTGTGATGGAAAAG
GCCAACGTCCAAAAGGAGGCCGTGCGCGAGATTGACGACAAGAAGGGAGG
GAAAGAGGAAGGGAATGCGGGAGAACCGTAG
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Coding sequence (CDS) from alignment at chr30:126987..129367+

>NO30G00310.1 ID=NO30G00310.1|Name=NO30G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=675bp|location=Sequence derived from alignment at chr30:126987..129367+ (Nannochloropsis oceanica)
ATGAAAAAACCTTCGCCGCGTGGCGCTGCCGGTGCCTCCTTTGTCTTCGT
GTGCGTCTTCCTGTTCTCGTCTTCTTCCGTCCTCGTCGATGGCAGTGCTC
TCCGTGGTTCTAGTGAGTCCCTCCTTCTTGACGACGGTGACGCGGGTGCA
TTAAAAGAGCCTCCTTTAGCGTACTTCCCCCATCATGGGGATGACCGAGA
GAATAGCGGGCGGCGAGTGCGAGGTCTGTCCAACCGCGCACTCGCCCCCA
TCTCCCCCGAGCTCGTGAAGGAGGAGAACCAAGGCTACGTCGAAGCAAAG
ACTTCTCCTATAGTGGTTAAGGCCCCGGAAGAGGCCGCCAAGGATCCTCT
CCGTCTCCCCGGAGGCAAGCAGGGCCCTGTCGAAGGCGCCAAGGATCCTC
TCCGTCTCCCCGGAGGCAAGCAGGGCCCTGTCGAAGGCGCCAAGGATCCT
CTCCGTCTCCCCGGAGGCAAGCAGGGCCCTGTTGAAGGCGCCAAGGATCC
TCTCCGTCTCCCCGGAGGCAAGCAGGGCCCTGTTGAAGGCGCCAAGGATC
CTCTCCGTCTCCCCGGAGGCAAGCAGGCCCCTGTGATGGAAAAGGCCAAC
GTCCAAAAGGAGGCCGTGCGCGAGATTGACGACAAGAAGGGAGGGAAAGA
GGAAGGGAATGCGGGAGAACCGTAG
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Synonyms
Publications