NO30G00230.1, NO30G00230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00230.1
Unique NameNO30G00230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2158
Alignment locationchr30:101992..106099 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:101992..106099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO30G00230.1 vs.
Match: OEU07897.1 (Clavaminate synthase-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 172.9 bits (437), Expect = 2.500e-39
Identity = 92/246 (37.40%), Postives = 126/246 (51.22%), Query Frame = 0
Query:  282 REEAHSYNAAFRMMTERENLLHKY-GHLEAKLTSSNAYSQGESHKTLREYLQEEWRERERRGGREGGRGANDTMYLFGNTFGEEWASFLSHYQRPPCRTCSDPDG----ALSFGLGPRHSGVSWHIHGPGYSEVLHGRKRWFLYPPSSSPPPSFHPNMSSLQWQEHVLPTLGGEGGGGRREKGREEEGSGMVVEDGEEICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTFTQE 523
            +   H  N  F+ +T  + +LH +  +    L+SSN++S+      L  YL+E       R        +N+  YLFG T+  EW +FL  Y+ PPC+ C +       ALSFG+G   SGV WH+HGPG+SE LHGRK W LYPP     P FHP+ +SL W  +   T+                     +ED             P  C + PG+IL+FP+MWWHA +N++DY  FVSTFTQE
Sbjct:   83 KNNIHKRNQQFQNITRSDRILHSFPDNFTVTLSSSNSFSEHSRTIPLASYLKEV-----NRNPTNPNMKSNENWYLFGETYSSEWKNFLRSYELPPCQACDNKFDENLIALSFGIGNSGSGVQWHVHGPGFSEALHGRKHWILYPPDYR--PDFHPDQTSLNWMYYNYSTITN-------------------MED------------KPLECTLSPGDILYFPNMWWHATVNVDDYTAFVSTFTQE 290          
The following BLAST results are available for this feature:
BLAST of NO30G00230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
OEU07897.12.500e-3937.40Clavaminate synthase-like protein [Fragilariopsis ... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00230NO30G00230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00230.1NO30G00230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00230.1.cds1NO30G00230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds2NO30G00230.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds3NO30G00230.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds4NO30G00230.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds5NO30G00230.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds6NO30G00230.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds7NO30G00230.1.cds7Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00230.1.cds8NO30G00230.1.cds8Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00230.1 ID=NO30G00230.1|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp
AATAGGGACACAGCCATGGAAGCCAACACCGATTCCGAGGATCTCCAGTC
CCTAATCGAGAAATCCCGGGCTGCGGGTGCTAAGAGAAAGGAGTCAATGG
GAAGCAAGAAATCTGGTTCTTATATCTCAGCACGTGCCCACCTTTTTCAT
TCCCCTATCCAATCCGACCGCGTTCCCTCCCCCATTTGGCCCTCCCGAAC
TCCTCCACCACTGAGACCGACGTATTGGACGTTGCCACGCTACCAAGCCC
TCTCCTCTTCCTCCATCGACTCTCCAATCGCTAAAACCATCATCGTATCC
CTCTCGCCCTCCCGTCTCTTCCACCCTCTTCCCATCCTGCCTCACCCTCT
TCCCATCCTGCCTCCATCACAGCCTCCTACTCATCGCCTTTCAAGACCTC
GCCGTTCAACTCCCTCTTCTCTCTCTCTCCCTCCCTCCTTCCTTCCCTCC
CTCCCTCTCTTCCTCTACCACAGCCTCCTCATCGCCTTTCAAGCACTCGC
CTCTCAAGAATCTCTTTCGTCGCCGCCTGTCGAAAAAGAGAGGAGCAGAC
ACAAACTTAGGGCCCCAAGACAAACACCAAGACAACACTATGATTATTTC
CTCCTCCTCCTCCTTCCCTTCACCCTCCTCCTTTCCTTCCTCCTCCTCCT
CCTCCTTCCCTTCACCCTCCTCCTTTCCTTCCTCCTCCTCCTCCTCCTTC
CCTTTCTCCTCCTCCTCCTTTCCTTCCTCCTCCTCCTCCTTTCCTTCCTC
CTCCTCCTTGCCTTCGGCCTCTTCTTCCTTCCACCTCCCCTTTTCCTCCT
CCTCCCCTCCCTCCCTCCCTCCCTCCTATCCCCTTTCCGGCACACCAGCC
TCCTTGTCATCGCCTTCCTCCCGTCCCTCCCAAGGGGTCCATCCCACCAG
CGTCGTCAGTAGTACGACAAACACTTCTACCACCAGCACCAGCACCAGCA
CCAGCAAAAACAACAGCACCAGCAGCAGCGTCATTACCAGCAGTACGACC
AGCACCTGTATCGGTAACATCAGCAGCAGCAGCAGCAGCAACAGCAGCAG
CAGCAGCAGCAGCAGCAGCAAACGGAGGAAGGGCGAGAAAGCCTCGCTGT
GGGGAGGGCCGGGGGGGCTGCTACTGTTGGCAGGGTCGACCTTTTGGGGC
TTCATTTCCTCGTACTTCTTGGTCATGCAGAGCGACCGACTCGCATCCCT
GGAGCATGTGCAGCCACAACAACATCCACATCATCAAGAAGCCTCCTCCT
CCTCCTCCTGCATGCTACCTCGGATCCCTCTCGCTTCCCTCCCTCTTCCC
CTCCGCTCCTTCCCGTCTCCCGTCGTCGTACTCCTCCCCGATCAGGAGGA
GGGAGTGGGGGAGAGAGGGAAGGAGGGAGGGCATAGAAAGTATGGAGGGG
AGAAGTCAGAAGTGGGAGGGAGGGAGGGCGGGAGGGAGGAAGCGCACTCG
TATAACGCGGCGTTCCGGATGATGACGGAAAGGGAGAACTTACTACACAA
GTACGGGCACTTGGAGGCCAAGCTGACAAGCAGCAACGCCTACAGCCAAG
GCGAGTCCCACAAAACGCTGCGGGAGTACCTGCAGGAAGAATGGAGGGAG
AGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGAGCGAACGACACGAT
GTACTTGTTCGGAAATACATTTGGGGAGGAGTGGGCCTCCTTTTTGTCGC
ACTACCAACGCCCTCCTTGCCGGACTTGCTCCGACCCCGACGGGGCCTTG
AGCTTCGGCCTCGGTCCTCGTCATTCCGGCGTTTCCTGGCACATCCACGG
CCCGGGCTACAGCGAGGTGCTGCACGGACGGAAGAGGTGGTTTCTCTACC
CCCCTTCGTCCTCCCCTCCTCCCTCCTTCCATCCTAACATGAGCAGCCTC
CAATGGCAAGAGCATGTACTGCCCACGCTGGGAGGAGAAGGAGGAGGAGG
AAGGAGAGAGAAAGGGAGGGAGGAAGAAGGATCTGGCATGGTCGTTGAAG
ACGGCGAGGAGATATGCCTAGAGGCAGGAACGAACGCCATGCCCTTCATC
TGCGACATCGGCCCGGGGGAAATACTGCACTTTCCGTCCATGTGGTGGCA
CGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTCCACCTTCACCC
AGGAGTAG
back to top

protein sequence of NO30G00230.1

>NO30G00230.1-protein ID=NO30G00230.1-protein|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp
MIISSSSSFPSPSSFPSSSSSSFPSPSSFPSSSSSSFPFSSSSFPSSSSS
FPSSSSLPSASSSFHLPFSSSSPPSLPPSYPLSGTPASLSSPSSRPSQGV
HPTSVVSSTTNTSTTSTSTSTSKNNSTSSSVITSSTTSTCIGNISSSSSS
NSSSSSSSSSKRRKGEKASLWGGPGGLLLLAGSTFWGFISSYFLVMQSDR
LASLEHVQPQQHPHHQEASSSSSCMLPRIPLASLPLPLRSFPSPVVVLLP
DQEEGVGERGKEGGHRKYGGEKSEVGGREGGREEAHSYNAAFRMMTEREN
LLHKYGHLEAKLTSSNAYSQGESHKTLREYLQEEWRERERRGGREGGRGA
NDTMYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSW
HIHGPGYSEVLHGRKRWFLYPPSSSPPPSFHPNMSSLQWQEHVLPTLGGE
GGGGRREKGREEEGSGMVVEDGEEICLEAGTNAMPFICDIGPGEILHFPS
MWWHAVLNLEDYNVFVSTFTQE*
back to top

mRNA from alignment at chr30:101992..106099+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00230.1 ID=NO30G00230.1|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=4108bp|location=Sequence derived from alignment at chr30:101992..106099+ (Nannochloropsis oceanica)
AATAGGGACACAGCCATGGAAGCCAACACCGATTCCGAGGATCTCCAGTC CCTAATCGAGAAATCCCGGGCTGCGGGTGCTAAGAGAAAGGAGTCAATGG GAAGCAAGAAATGTAAGTCGTGTCGGCATGTTCAAATCCCATCGCAACAA CCACCGCACACCCTGACGAGTCTGTCAATTGACGGGGCCGCATGCAAACA TTAGCACTTACGAAAAAGGAGGCGAAGGATGCGTGCGCAGTGTGCAGCTT AACTACTCTATGTGCTAGCTCCACAAACAGCCATCGTCATCCTCCTCGTC GTTCCATCCTTGCCACTCCACCTCTTTGCCTCCCGGTCCGAGAGCATACG TATACACCCACCGCTTCCTTTATCCCACTTTCGTCTGATCTATTCCACTA TCGTATCGTGCTTACACATCTACCTCTGGCCTTGGCTTGACCCGTTCTCT TCCACCCCTCCACCCACCCACCTTCCCTACCTACGCCTTCAGCTGGTTCT TATATCTCAGCACGTGCCCACCTTTTTCATTCCCCTATCCAATCCGACCG CGTTCCCTCCCCCATTTGGCCCTCCCGAACTCCTCCACCACTGAGACCGA CGTATTGGACGTTGCCACGCTACCAAGCCCTCTCCTCTTCCTCCATCGAC TCTCCAATCGCTAAAACCATCATCGTATCCCTCTCGCCCTCCCGTCTCTT CCACCCTCTTCCCATCCTGCCTCACCCTCTTCCCATCCTGCCTCCATCAC AGCCTCCTACTCATCGCCTTTCAAGACCTCGCCGTTCAACTCCCTCTTCT CTCTCTCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCTCTTCCTCTACCA CAGCCTCCTCATCGCCTTTCAAGCACTCGCCTCTCAAGAATCTCTTTCGT CGCCGCCTGTCGAAAAAGAGAGGAGCAGGTAAGAGGGAGGGAGGGAGGGA GGGAGGGAGGGAGAGAGAGGCACAGCAGGCTTTTTGGTCAAATTTCTTCC TCTTCTCCGTCACAAACACAATAAATACACCTTCTTTCCCTCCCTCCCTC TCCCCTCACCATCACAAACACAACATAGACACAAACTTAGGGCCCCAAGA CAAACACCAAGACAACACTATGATTATTTCCTCCTCCTCCTCCTTCCCTT CACCCTCCTCCTTTCCTTCCTCCTCCTCCTCCTCCTTCCCTTCACCCTCC TCCTTTCCTTCCTCCTCCTCCTCCTCCTTCCCTTTCTCCTCCTCCTCCTT TCCTTCCTCCTCCTCCTCCTTTCCTTCCTCCTCCTCCTTGCCTTCGGCCT CTTCTTCCTTCCACCTCCCCTTTTCCTCCTCCTCCCCTCCCTCCCTCCCT CCCTCCTATCCCCTTTCCGGCACACCAGCCTCCTTGTCATCGCCTTCCTC CCGTCCCTCCCAAGGGGTCCATCCCACCAGCGTCGTCAGTAGTACGACAA ACACTTCTACCACCAGCACCAGCACCAGCACCAGCAAAAACAACAGCACC AGCAGCAGCGTCATTACCAGCAGTACGACCAGCACCTGTATCGGTAACAT CAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA AACGGAGGAAGGGCGAGAAAGCCTCGCTGTGGGGAGGGCCGGGGGGGCTG CTACTGTTGGCAGGGTCGACCTTTTGGGGCTTCATTTCCTCGTACTTCTT GGTCATGCAGAGCGACCGACTCGCATCCCTGGAGCATGTGCAGGTGAAGG GGGAGGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGGTGTCAC CATACTAGTATATGGCCTGTCAGGGAGGGAGGGAGGGAGGGAGGGAGGGA GGGAGGGGTTTGTGTTACCAGCAAACGACCAGTCAACCGATCTACCCTCT CCTTATCATTCACATCCTTGCATGACTCCCTCCCTCCCTCCCTCCCTCCC TTGCACAGCCACAACAACATCCACATCATCAAGAAGCCTCCTCCTCCTCC TCCTGCATGCTACCTCGGATCCCTCTCGCTTCCCTCCCTCTTCCCCTCCG CTCCTTCCCGTCTCCCGTCGTCGTACTCCTCCCCGATCAGGAGGAGGGAG TGGGGGAGAGAGGGAAGGAGGGAGGGCATAGAAAGTATGGAGGGGAGAAG TCAGAAGTGGGAGGGAGGGAGGGCGGGAGGGAGGAAGCGCACTCGTATAA CGCGGCGTTCCGGATGATGACGGAAAGGGAGAACTTACTACACAAGTACG GGCACTTGGAGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAG GGAGGGAAGGCGGTGGGTGGAAGAACGTCGAAAATTGAAGATTGACGCTT CCTTCCCTCCCTTCCTTCCTGTCCTCCCTTCCCCTCTTCCCTCCCTCCCT CCCTCCCTCCCTTCCTTCCTAGGCCAAGCTGACAAGCAGCAACGCCTACA GCCAAGGCGAGTCCCACAAAACGCTGCGGGAGTACCTGCAGGAAGAATGG AGGGAGAGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGAGCGAACGA CACGATGTACTTGTTCGGAAATACATTTGGGGAGGAGGTAGGGTGGGAAA AACGGACAAAGAGAGGGAGGGAGAGAGGGAGGGAGGCAGGGAGAGAGAGA GGAGGCTTGATGTCACCGTCTAACGTTACATCTGATGGCCTCCCTGCCTC CCTCCCTCCTTCCCTCCCTCCCTCCCTCCTAAGTGGGCCTCCTTTTTGTC GCACTACCAACGCCCTCCTTGCCGGACTTGCTCCGACCCCGACGGGGCCT TGAGGTGGTTAAACCCTCCCTCCCTCCCTCCTTCCCTCTCTCTCTTTCCT CCCTCCCTCCCTCCTTCTCTCTCTTTCCTCCCTCCCTCTCTCTCTTTCCT TCCTCTCTCCCTCTCTCCCTCCCTCTCTCCCTGCCTCCCTTCCTCCTTCC CTCCCTCTCCCCCTCTCACTCTTTCCTCCCTCCCTCCCTATTTCCTCTCT CTCTCACTTCCTCCCCGCTTCCCCTCCCCCCCTCCTTCTTTTCCTCCCTC CCTCCCTCCCTCCCTCCCTTCCTCTTCCACCAGCTTCGGCCTCGGTCCTC GTCATTCCGGCGTTTCCTGGCACATCCACGGCCCGGGCTACAGCGAGGTA CGGACGGAGGGAGGGAGGGAAGATGGAGAGGACAGCGACGAAAAAGACAG GACTCACACCACACCCCTCCATCCCATCCCTCCCATCCCTCCCATCCCTC CCATCCCTCCCTCCCTCCCTCCCTCCCTCCTTAGGTGCTGCACGGACGGA AGAGGTGGTTTCTCTACCCCCCTTCGTCCTCCCCTCCTCCCTCCTTCCAT CCTAACATGAGCAGCCTCCAATGGCAAGAGCATGTACTGCCCACGCTGGG AGGAGAAGGAGGAGGAGGAAGGAGAGAGAAAGGGAGGGAGGAAGAAGGAT CTGGCATGGTCGTTGAAGACGGCGAGGTACGGGAGAGGAAGGCAGGAGAG TAGGGAGAGAGGGAAGGAGGGAGGAAGGGAGGGAAGGAAGGGAAAGAAGG AGAGGGAGAGAGGGAGGGGGGGAGGGAGGGCGAAAGGCTGTTGTCAGAAG CATGGGTAGATGGAAGCGGCCTCCACTTCCTTCCCTCCCTCCTTCACTCT CCCCCTCCCTTTCTTCCCTCCTCTCTCCCTCCCTCCTGCTTTGGAAGTAG TCTCATCTTACGAAGCAGCGCAGAATCATTCCCCTTCCCTCACTCCTTCC CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCGTAGGAGATATGCCTAGA GGCAGGAACGAACGCCATGCCCTTCATCTGCGACATCGGCCCGGGGGAAA TACTGGTGAGGGAGCGATGTATCAAAGCAAAGCTGTCAATATGATCAGAG GCTAGGCCATGGTGGTAATCAATCTCACCAAAGAGTCACATCAAATACGG CGTGGAATACACAAATCGAATCATTCCCCTCTTACCCCCACCCATCTTCT CCTCCCTGCCTCTTTCCCCTTCCTCAGCACTTTCCGTCCATGTGGTGGCA CGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTCCACCTTCACCC AGGAGTAG
back to top

Coding sequence (CDS) from alignment at chr30:101992..106099+

>NO30G00230.1 ID=NO30G00230.1|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr30:101992..106099+ (Nannochloropsis oceanica)
ATGATTATTTCCTCCTCCTCCTCCTTCCCTTCACCCTCCTCCTTTCCTTC
CTCCTCCTCCTCCTCCTTCCCTTCACCCTCCTCCTTTCCTTCCTCCTCCT
CCTCCTCCTTCCCTTTCTCCTCCTCCTCCTTTCCTTCCTCCTCCTCCTCC
TTTCCTTCCTCCTCCTCCTTGCCTTCGGCCTCTTCTTCCTTCCACCTCCC
CTTTTCCTCCTCCTCCCCTCCCTCCCTCCCTCCCTCCTATCCCCTTTCCG
GCACACCAGCCTCCTTGTCATCGCCTTCCTCCCGTCCCTCCCAAGGGGTC
CATCCCACCAGCGTCGTCAGTAGTACGACAAACACTTCTACCACCAGCAC
CAGCACCAGCACCAGCAAAAACAACAGCACCAGCAGCAGCGTCATTACCA
GCAGTACGACCAGCACCTGTATCGGTAACATCAGCAGCAGCAGCAGCAGC
AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAACGGAGGAAGGGCGAGAA
AGCCTCGCTGTGGGGAGGGCCGGGGGGGCTGCTACTGTTGGCAGGGTCGA
CCTTTTGGGGCTTCATTTCCTCGTACTTCTTGGTCATGCAGAGCGACCGA
CTCGCATCCCTGGAGCATGTGCAGCCACAACAACATCCACATCATCAAGA
AGCCTCCTCCTCCTCCTCCTGCATGCTACCTCGGATCCCTCTCGCTTCCC
TCCCTCTTCCCCTCCGCTCCTTCCCGTCTCCCGTCGTCGTACTCCTCCCC
GATCAGGAGGAGGGAGTGGGGGAGAGAGGGAAGGAGGGAGGGCATAGAAA
GTATGGAGGGGAGAAGTCAGAAGTGGGAGGGAGGGAGGGCGGGAGGGAGG
AAGCGCACTCGTATAACGCGGCGTTCCGGATGATGACGGAAAGGGAGAAC
TTACTACACAAGTACGGGCACTTGGAGGCCAAGCTGACAAGCAGCAACGC
CTACAGCCAAGGCGAGTCCCACAAAACGCTGCGGGAGTACCTGCAGGAAG
AATGGAGGGAGAGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGAGCG
AACGACACGATGTACTTGTTCGGAAATACATTTGGGGAGGAGTGGGCCTC
CTTTTTGTCGCACTACCAACGCCCTCCTTGCCGGACTTGCTCCGACCCCG
ACGGGGCCTTGAGCTTCGGCCTCGGTCCTCGTCATTCCGGCGTTTCCTGG
CACATCCACGGCCCGGGCTACAGCGAGGTGCTGCACGGACGGAAGAGGTG
GTTTCTCTACCCCCCTTCGTCCTCCCCTCCTCCCTCCTTCCATCCTAACA
TGAGCAGCCTCCAATGGCAAGAGCATGTACTGCCCACGCTGGGAGGAGAA
GGAGGAGGAGGAAGGAGAGAGAAAGGGAGGGAGGAAGAAGGATCTGGCAT
GGTCGTTGAAGACGGCGAGGAGATATGCCTAGAGGCAGGAACGAACGCCA
TGCCCTTCATCTGCGACATCGGCCCGGGGGAAATACTGCACTTTCCGTCC
ATGTGGTGGCACGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTC
CACCTTCACCCAGGAGTAG
back to top
Synonyms
Publications