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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr30 | genome | chr30:101992..106099 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO30G00230.1 vs.
Match: OEU07897.1 (Clavaminate synthase-like protein [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 172.9 bits (437), Expect = 2.500e-39 Identity = 92/246 (37.40%), Postives = 126/246 (51.22%), Query Frame = 0
Query: 282 REEAHSYNAAFRMMTERENLLHKY-GHLEAKLTSSNAYSQGESHKTLREYLQEEWRERERRGGREGGRGANDTMYLFGNTFGEEWASFLSHYQRPPCRTCSDPDG----ALSFGLGPRHSGVSWHIHGPGYSEVLHGRKRWFLYPPSSSPPPSFHPNMSSLQWQEHVLPTLGGEGGGGRREKGREEEGSGMVVEDGEEICLEAGTNAMPFICDIGPGEILHFPSMWWHAVLNLEDYNVFVSTFTQE 523
+ H N F+ +T + +LH + + L+SSN++S+ L YL+E R +N+ YLFG T+ EW +FL Y+ PPC+ C + ALSFG+G SGV WH+HGPG+SE LHGRK W LYPP P FHP+ +SL W + T+ +ED P C + PG+IL+FP+MWWHA +N++DY FVSTFTQE
Sbjct: 83 KNNIHKRNQQFQNITRSDRILHSFPDNFTVTLSSSNSFSEHSRTIPLASYLKEV-----NRNPTNPNMKSNENWYLFGETYSSEWKNFLRSYELPPCQACDNKFDENLIALSFGIGNSGSGVQWHVHGPGFSEALHGRKHWILYPPDYR--PDFHPDQTSLNWMYYNYSTITN-------------------MED------------KPLECTLSPGDILYFPNMWWHATVNVDDYTAFVSTFTQE 290
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO30G00230.1 ID=NO30G00230.1|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=2158bp AATAGGGACACAGCCATGGAAGCCAACACCGATTCCGAGGATCTCCAGTC CCTAATCGAGAAATCCCGGGCTGCGGGTGCTAAGAGAAAGGAGTCAATGG GAAGCAAGAAATCTGGTTCTTATATCTCAGCACGTGCCCACCTTTTTCAT TCCCCTATCCAATCCGACCGCGTTCCCTCCCCCATTTGGCCCTCCCGAAC TCCTCCACCACTGAGACCGACGTATTGGACGTTGCCACGCTACCAAGCCC TCTCCTCTTCCTCCATCGACTCTCCAATCGCTAAAACCATCATCGTATCC CTCTCGCCCTCCCGTCTCTTCCACCCTCTTCCCATCCTGCCTCACCCTCT TCCCATCCTGCCTCCATCACAGCCTCCTACTCATCGCCTTTCAAGACCTC GCCGTTCAACTCCCTCTTCTCTCTCTCTCCCTCCCTCCTTCCTTCCCTCC CTCCCTCTCTTCCTCTACCACAGCCTCCTCATCGCCTTTCAAGCACTCGC CTCTCAAGAATCTCTTTCGTCGCCGCCTGTCGAAAAAGAGAGGAGCAGAC ACAAACTTAGGGCCCCAAGACAAACACCAAGACAACACTATGATTATTTC CTCCTCCTCCTCCTTCCCTTCACCCTCCTCCTTTCCTTCCTCCTCCTCCT CCTCCTTCCCTTCACCCTCCTCCTTTCCTTCCTCCTCCTCCTCCTCCTTC CCTTTCTCCTCCTCCTCCTTTCCTTCCTCCTCCTCCTCCTTTCCTTCCTC CTCCTCCTTGCCTTCGGCCTCTTCTTCCTTCCACCTCCCCTTTTCCTCCT CCTCCCCTCCCTCCCTCCCTCCCTCCTATCCCCTTTCCGGCACACCAGCC TCCTTGTCATCGCCTTCCTCCCGTCCCTCCCAAGGGGTCCATCCCACCAG CGTCGTCAGTAGTACGACAAACACTTCTACCACCAGCACCAGCACCAGCA CCAGCAAAAACAACAGCACCAGCAGCAGCGTCATTACCAGCAGTACGACC AGCACCTGTATCGGTAACATCAGCAGCAGCAGCAGCAGCAACAGCAGCAG CAGCAGCAGCAGCAGCAGCAAACGGAGGAAGGGCGAGAAAGCCTCGCTGT GGGGAGGGCCGGGGGGGCTGCTACTGTTGGCAGGGTCGACCTTTTGGGGC TTCATTTCCTCGTACTTCTTGGTCATGCAGAGCGACCGACTCGCATCCCT GGAGCATGTGCAGCCACAACAACATCCACATCATCAAGAAGCCTCCTCCT CCTCCTCCTGCATGCTACCTCGGATCCCTCTCGCTTCCCTCCCTCTTCCC CTCCGCTCCTTCCCGTCTCCCGTCGTCGTACTCCTCCCCGATCAGGAGGA GGGAGTGGGGGAGAGAGGGAAGGAGGGAGGGCATAGAAAGTATGGAGGGG AGAAGTCAGAAGTGGGAGGGAGGGAGGGCGGGAGGGAGGAAGCGCACTCG TATAACGCGGCGTTCCGGATGATGACGGAAAGGGAGAACTTACTACACAA GTACGGGCACTTGGAGGCCAAGCTGACAAGCAGCAACGCCTACAGCCAAG GCGAGTCCCACAAAACGCTGCGGGAGTACCTGCAGGAAGAATGGAGGGAG AGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGAGCGAACGACACGAT GTACTTGTTCGGAAATACATTTGGGGAGGAGTGGGCCTCCTTTTTGTCGC ACTACCAACGCCCTCCTTGCCGGACTTGCTCCGACCCCGACGGGGCCTTG AGCTTCGGCCTCGGTCCTCGTCATTCCGGCGTTTCCTGGCACATCCACGG CCCGGGCTACAGCGAGGTGCTGCACGGACGGAAGAGGTGGTTTCTCTACC CCCCTTCGTCCTCCCCTCCTCCCTCCTTCCATCCTAACATGAGCAGCCTC CAATGGCAAGAGCATGTACTGCCCACGCTGGGAGGAGAAGGAGGAGGAGG AAGGAGAGAGAAAGGGAGGGAGGAAGAAGGATCTGGCATGGTCGTTGAAG ACGGCGAGGAGATATGCCTAGAGGCAGGAACGAACGCCATGCCCTTCATC TGCGACATCGGCCCGGGGGAAATACTGCACTTTCCGTCCATGTGGTGGCA CGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTCCACCTTCACCC AGGAGTAG back to topprotein sequence of NO30G00230.1 >NO30G00230.1-protein ID=NO30G00230.1-protein|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=523bp MIISSSSSFPSPSSFPSSSSSSFPSPSSFPSSSSSSFPFSSSSFPSSSSS FPSSSSLPSASSSFHLPFSSSSPPSLPPSYPLSGTPASLSSPSSRPSQGV HPTSVVSSTTNTSTTSTSTSTSKNNSTSSSVITSSTTSTCIGNISSSSSS NSSSSSSSSSKRRKGEKASLWGGPGGLLLLAGSTFWGFISSYFLVMQSDR LASLEHVQPQQHPHHQEASSSSSCMLPRIPLASLPLPLRSFPSPVVVLLP DQEEGVGERGKEGGHRKYGGEKSEVGGREGGREEAHSYNAAFRMMTEREN LLHKYGHLEAKLTSSNAYSQGESHKTLREYLQEEWRERERRGGREGGRGA NDTMYLFGNTFGEEWASFLSHYQRPPCRTCSDPDGALSFGLGPRHSGVSW HIHGPGYSEVLHGRKRWFLYPPSSSPPPSFHPNMSSLQWQEHVLPTLGGE GGGGRREKGREEEGSGMVVEDGEEICLEAGTNAMPFICDIGPGEILHFPS MWWHAVLNLEDYNVFVSTFTQE* back to topmRNA from alignment at chr30:101992..106099+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO30G00230.1 ID=NO30G00230.1|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=mRNA|length=4108bp|location=Sequence derived from alignment at chr30:101992..106099+ (Nannochloropsis oceanica) AATAGGGACACAGCCATGGAAGCCAACACCGATTCCGAGGATCTCCAGTC
CCTAATCGAGAAATCCCGGGCTGCGGGTGCTAAGAGAAAGGAGTCAATGG
GAAGCAAGAAATGTAAGTCGTGTCGGCATGTTCAAATCCCATCGCAACAA
CCACCGCACACCCTGACGAGTCTGTCAATTGACGGGGCCGCATGCAAACA
TTAGCACTTACGAAAAAGGAGGCGAAGGATGCGTGCGCAGTGTGCAGCTT
AACTACTCTATGTGCTAGCTCCACAAACAGCCATCGTCATCCTCCTCGTC
GTTCCATCCTTGCCACTCCACCTCTTTGCCTCCCGGTCCGAGAGCATACG
TATACACCCACCGCTTCCTTTATCCCACTTTCGTCTGATCTATTCCACTA
TCGTATCGTGCTTACACATCTACCTCTGGCCTTGGCTTGACCCGTTCTCT
TCCACCCCTCCACCCACCCACCTTCCCTACCTACGCCTTCAGCTGGTTCT
TATATCTCAGCACGTGCCCACCTTTTTCATTCCCCTATCCAATCCGACCG
CGTTCCCTCCCCCATTTGGCCCTCCCGAACTCCTCCACCACTGAGACCGA
CGTATTGGACGTTGCCACGCTACCAAGCCCTCTCCTCTTCCTCCATCGAC
TCTCCAATCGCTAAAACCATCATCGTATCCCTCTCGCCCTCCCGTCTCTT
CCACCCTCTTCCCATCCTGCCTCACCCTCTTCCCATCCTGCCTCCATCAC
AGCCTCCTACTCATCGCCTTTCAAGACCTCGCCGTTCAACTCCCTCTTCT
CTCTCTCTCCCTCCCTCCTTCCTTCCCTCCCTCCCTCTCTTCCTCTACCA
CAGCCTCCTCATCGCCTTTCAAGCACTCGCCTCTCAAGAATCTCTTTCGT
CGCCGCCTGTCGAAAAAGAGAGGAGCAGGTAAGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGAGAGAGGCACAGCAGGCTTTTTGGTCAAATTTCTTCC
TCTTCTCCGTCACAAACACAATAAATACACCTTCTTTCCCTCCCTCCCTC
TCCCCTCACCATCACAAACACAACATAGACACAAACTTAGGGCCCCAAGA
CAAACACCAAGACAACACTATGATTATTTCCTCCTCCTCCTCCTTCCCTT
CACCCTCCTCCTTTCCTTCCTCCTCCTCCTCCTCCTTCCCTTCACCCTCC
TCCTTTCCTTCCTCCTCCTCCTCCTCCTTCCCTTTCTCCTCCTCCTCCTT
TCCTTCCTCCTCCTCCTCCTTTCCTTCCTCCTCCTCCTTGCCTTCGGCCT
CTTCTTCCTTCCACCTCCCCTTTTCCTCCTCCTCCCCTCCCTCCCTCCCT
CCCTCCTATCCCCTTTCCGGCACACCAGCCTCCTTGTCATCGCCTTCCTC
CCGTCCCTCCCAAGGGGTCCATCCCACCAGCGTCGTCAGTAGTACGACAA
ACACTTCTACCACCAGCACCAGCACCAGCACCAGCAAAAACAACAGCACC
AGCAGCAGCGTCATTACCAGCAGTACGACCAGCACCTGTATCGGTAACAT
CAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAGCA
AACGGAGGAAGGGCGAGAAAGCCTCGCTGTGGGGAGGGCCGGGGGGGCTG
CTACTGTTGGCAGGGTCGACCTTTTGGGGCTTCATTTCCTCGTACTTCTT
GGTCATGCAGAGCGACCGACTCGCATCCCTGGAGCATGTGCAGGTGAAGG
GGGAGGGAGGGAAGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGGTGTCAC
CATACTAGTATATGGCCTGTCAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGTTTGTGTTACCAGCAAACGACCAGTCAACCGATCTACCCTCT
CCTTATCATTCACATCCTTGCATGACTCCCTCCCTCCCTCCCTCCCTCCC
TTGCACAGCCACAACAACATCCACATCATCAAGAAGCCTCCTCCTCCTCC
TCCTGCATGCTACCTCGGATCCCTCTCGCTTCCCTCCCTCTTCCCCTCCG
CTCCTTCCCGTCTCCCGTCGTCGTACTCCTCCCCGATCAGGAGGAGGGAG
TGGGGGAGAGAGGGAAGGAGGGAGGGCATAGAAAGTATGGAGGGGAGAAG
TCAGAAGTGGGAGGGAGGGAGGGCGGGAGGGAGGAAGCGCACTCGTATAA
CGCGGCGTTCCGGATGATGACGGAAAGGGAGAACTTACTACACAAGTACG
GGCACTTGGAGGTGAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAG
GGAGGGAAGGCGGTGGGTGGAAGAACGTCGAAAATTGAAGATTGACGCTT
CCTTCCCTCCCTTCCTTCCTGTCCTCCCTTCCCCTCTTCCCTCCCTCCCT
CCCTCCCTCCCTTCCTTCCTAGGCCAAGCTGACAAGCAGCAACGCCTACA
GCCAAGGCGAGTCCCACAAAACGCTGCGGGAGTACCTGCAGGAAGAATGG
AGGGAGAGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGAGCGAACGA
CACGATGTACTTGTTCGGAAATACATTTGGGGAGGAGGTAGGGTGGGAAA
AACGGACAAAGAGAGGGAGGGAGAGAGGGAGGGAGGCAGGGAGAGAGAGA
GGAGGCTTGATGTCACCGTCTAACGTTACATCTGATGGCCTCCCTGCCTC
CCTCCCTCCTTCCCTCCCTCCCTCCCTCCTAAGTGGGCCTCCTTTTTGTC
GCACTACCAACGCCCTCCTTGCCGGACTTGCTCCGACCCCGACGGGGCCT
TGAGGTGGTTAAACCCTCCCTCCCTCCCTCCTTCCCTCTCTCTCTTTCCT
CCCTCCCTCCCTCCTTCTCTCTCTTTCCTCCCTCCCTCTCTCTCTTTCCT
TCCTCTCTCCCTCTCTCCCTCCCTCTCTCCCTGCCTCCCTTCCTCCTTCC
CTCCCTCTCCCCCTCTCACTCTTTCCTCCCTCCCTCCCTATTTCCTCTCT
CTCTCACTTCCTCCCCGCTTCCCCTCCCCCCCTCCTTCTTTTCCTCCCTC
CCTCCCTCCCTCCCTCCCTTCCTCTTCCACCAGCTTCGGCCTCGGTCCTC
GTCATTCCGGCGTTTCCTGGCACATCCACGGCCCGGGCTACAGCGAGGTA
CGGACGGAGGGAGGGAGGGAAGATGGAGAGGACAGCGACGAAAAAGACAG
GACTCACACCACACCCCTCCATCCCATCCCTCCCATCCCTCCCATCCCTC
CCATCCCTCCCTCCCTCCCTCCCTCCCTCCTTAGGTGCTGCACGGACGGA
AGAGGTGGTTTCTCTACCCCCCTTCGTCCTCCCCTCCTCCCTCCTTCCAT
CCTAACATGAGCAGCCTCCAATGGCAAGAGCATGTACTGCCCACGCTGGG
AGGAGAAGGAGGAGGAGGAAGGAGAGAGAAAGGGAGGGAGGAAGAAGGAT
CTGGCATGGTCGTTGAAGACGGCGAGGTACGGGAGAGGAAGGCAGGAGAG
TAGGGAGAGAGGGAAGGAGGGAGGAAGGGAGGGAAGGAAGGGAAAGAAGG
AGAGGGAGAGAGGGAGGGGGGGAGGGAGGGCGAAAGGCTGTTGTCAGAAG
CATGGGTAGATGGAAGCGGCCTCCACTTCCTTCCCTCCCTCCTTCACTCT
CCCCCTCCCTTTCTTCCCTCCTCTCTCCCTCCCTCCTGCTTTGGAAGTAG
TCTCATCTTACGAAGCAGCGCAGAATCATTCCCCTTCCCTCACTCCTTCC
CTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCGTAGGAGATATGCCTAGA
GGCAGGAACGAACGCCATGCCCTTCATCTGCGACATCGGCCCGGGGGAAA
TACTGGTGAGGGAGCGATGTATCAAAGCAAAGCTGTCAATATGATCAGAG
GCTAGGCCATGGTGGTAATCAATCTCACCAAAGAGTCACATCAAATACGG
CGTGGAATACACAAATCGAATCATTCCCCTCTTACCCCCACCCATCTTCT
CCTCCCTGCCTCTTTCCCCTTCCTCAGCACTTTCCGTCCATGTGGTGGCA
CGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTCCACCTTCACCC
AGGAGTAG back to topCoding sequence (CDS) from alignment at chr30:101992..106099+ >NO30G00230.1 ID=NO30G00230.1|Name=NO30G00230.1|organism=Nannochloropsis oceanica|type=CDS|length=1569bp|location=Sequence derived from alignment at chr30:101992..106099+ (Nannochloropsis oceanica) ATGATTATTTCCTCCTCCTCCTCCTTCCCTTCACCCTCCTCCTTTCCTTC CTCCTCCTCCTCCTCCTTCCCTTCACCCTCCTCCTTTCCTTCCTCCTCCT CCTCCTCCTTCCCTTTCTCCTCCTCCTCCTTTCCTTCCTCCTCCTCCTCC TTTCCTTCCTCCTCCTCCTTGCCTTCGGCCTCTTCTTCCTTCCACCTCCC CTTTTCCTCCTCCTCCCCTCCCTCCCTCCCTCCCTCCTATCCCCTTTCCG GCACACCAGCCTCCTTGTCATCGCCTTCCTCCCGTCCCTCCCAAGGGGTC CATCCCACCAGCGTCGTCAGTAGTACGACAAACACTTCTACCACCAGCAC CAGCACCAGCACCAGCAAAAACAACAGCACCAGCAGCAGCGTCATTACCA GCAGTACGACCAGCACCTGTATCGGTAACATCAGCAGCAGCAGCAGCAGC AACAGCAGCAGCAGCAGCAGCAGCAGCAGCAAACGGAGGAAGGGCGAGAA AGCCTCGCTGTGGGGAGGGCCGGGGGGGCTGCTACTGTTGGCAGGGTCGA CCTTTTGGGGCTTCATTTCCTCGTACTTCTTGGTCATGCAGAGCGACCGA CTCGCATCCCTGGAGCATGTGCAGCCACAACAACATCCACATCATCAAGA AGCCTCCTCCTCCTCCTCCTGCATGCTACCTCGGATCCCTCTCGCTTCCC TCCCTCTTCCCCTCCGCTCCTTCCCGTCTCCCGTCGTCGTACTCCTCCCC GATCAGGAGGAGGGAGTGGGGGAGAGAGGGAAGGAGGGAGGGCATAGAAA GTATGGAGGGGAGAAGTCAGAAGTGGGAGGGAGGGAGGGCGGGAGGGAGG AAGCGCACTCGTATAACGCGGCGTTCCGGATGATGACGGAAAGGGAGAAC TTACTACACAAGTACGGGCACTTGGAGGCCAAGCTGACAAGCAGCAACGC CTACAGCCAAGGCGAGTCCCACAAAACGCTGCGGGAGTACCTGCAGGAAG AATGGAGGGAGAGAGAGAGGAGGGGAGGGAGGGAGGGAGGGAGGGGAGCG AACGACACGATGTACTTGTTCGGAAATACATTTGGGGAGGAGTGGGCCTC CTTTTTGTCGCACTACCAACGCCCTCCTTGCCGGACTTGCTCCGACCCCG ACGGGGCCTTGAGCTTCGGCCTCGGTCCTCGTCATTCCGGCGTTTCCTGG CACATCCACGGCCCGGGCTACAGCGAGGTGCTGCACGGACGGAAGAGGTG GTTTCTCTACCCCCCTTCGTCCTCCCCTCCTCCCTCCTTCCATCCTAACA TGAGCAGCCTCCAATGGCAAGAGCATGTACTGCCCACGCTGGGAGGAGAA GGAGGAGGAGGAAGGAGAGAGAAAGGGAGGGAGGAAGAAGGATCTGGCAT GGTCGTTGAAGACGGCGAGGAGATATGCCTAGAGGCAGGAACGAACGCCA TGCCCTTCATCTGCGACATCGGCCCGGGGGAAATACTGCACTTTCCGTCC ATGTGGTGGCACGCGGTTCTCAACCTGGAGGACTACAACGTCTTCGTCTC CACCTTCACCCAGGAGTAG back to top
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