NO30G00090.1, NO30G00090.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO30G00090.1
Unique NameNO30G00090.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1662
Alignment locationchr30:38558..40366 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr30genomechr30:38558..40366 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO30G00090.1 vs.
Match: XP_011132150.1 (putative transmembrane protein [Gregarina niphandrodes]; EZG47684.1 putative transmembrane protein [Gregarina niphandrodes])

HSP 1 Score: 75.1 bits (183), Expect = 4.800e-10
Identity = 42/138 (30.43%), Postives = 72/138 (52.17%), Query Frame = 0 
Query:   74 FPVYYINMEQSSGRRERMELDFGGIWDLRRSPAVDGMDIDIVLQLMGRMNYDDIHSSISDD----RRQGTINGAELGCVLSHLTAIRRAYLEGNEIAMIVEDDITPLLMPFWTNSLVDVINEAGNYSAGTWDMVQMAW 208
            FP++YIN+++ S RR  ME  FG       +  V G +   +  ++ +    +  + ++D     RR+      ELG ++ HL AI++AY   ++  +I+EDD+   L P+W  SL  V ++A  Y  G W  +Q+ W
Sbjct: 1383 FPIFYINLQKQSNRRRYMEETFGP-----SAVRVGGTNGTNLFAVLDKYRIGEPEAFVNDPWGYLRREHQTTPGELGALIGHLDAIKKAYQGHHDTVLIMEDDMGVQLCPYWPASLAVVKSQADIYYPG-WHSIQLQW 1514
The following BLAST results are available for this feature:
BLAST of NO30G00090.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_011132150.14.800e-1030.43putative transmembrane protein [Gregarina niphandr... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO30G00090NO30G00090Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO30G00090.1NO30G00090.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO30G00090.1.cds1NO30G00090.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00090.1.cds2NO30G00090.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO30G00090.1.cds3NO30G00090.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO30G00090.1 ID=NO30G00090.1|Name=NO30G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1662bp
GTGTACCTGTGGTAATTGTTCAACCAGTGGCAAAGGATTAGGGTTCATAT
GCAAGAATAGAGTTACGAAATTCTCGACCCGTGCAATCAATGAATGTCTG
GACATTTAGTTTTACCACAATTACTTATGGCAAATTATCTTTGATTATTG
CTTTTTGAGCTTTAGATTGGCCTGGGGAGAAATATATGAGTAGCGCAGAG
TGCGTACGTGTTCTGAGGGGTATATAGAAAACCCGCCCCCCCTTTCCCCA
CCCGCTTTATCTTAATATATTGATGTGAAAGTGAATGAGAAATCAATATT
GAAGCTAGTTTGGATTTTGAATCTGACTCCTACTACGTATTTAGGGGCAT
ATTCGACCCTCGTAAAGGCCTCGCAGTGGGTATAGATATACTTGCTGTTT
GAGTGAAAACAAGATGACCATGTTAGGACTCAAAGCGCATCCCCGCCATT
TGCCAAATACGGCGTCATCGATCCTTCTGTTTACGCCGCGTACCTTTATA
ACCACATTTCTCATTTTATCCTTCTCATGGACCTTGTTCCTGGTGGCACT
ACAACAATTTTCTGAAAGACGGTGTTCTCAATTGAGACCAGATCTTACCC
TTTTCGCTGGTCATATTAACTATGAACTTCCCTTCCCAGTGTATTATATT
AACATGGAGCAAAGCTCTGGGCGGCGAGAGAGAATGGAGCTCGATTTCGG
TGGTATATGGGACTTGCGAAGAAGTCCGGCCGTGGATGGAATGGATATAG
ATATCGTCCTCCAGCTCATGGGCCGGATGAACTACGACGATATTCATTCG
TCTATCTCAGACGACAGGCGTCAAGGCACCATCAACGGCGCAGAGCTTGG
CTGTGTGCTATCACATCTTACAGCGATAAGGCGCGCGTACCTCGAAGGGA
ACGAGATTGCCATGATTGTAGAAGATGATATCACCCCGTTACTCATGCCA
TTTTGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGAAACTATTC
AGCTGGCACGTGGGACATGGTTCAGATGGCTTGGATTTGGGGCATGGATG
AGACCTTATATGATCGAGATGCGCATAATTTTGGTCCAGACCGTCATCTG
TTACAAACACGATTTCAATTCGGCACCTCAGCGTATGTCATTTCCAAGGG
AGGAATGGGAAAAATCCTCAATGCCTACTTCACTGACAGAACAGAGACCG
GGCAGATTCGCCTTCGAAAAGGGGGCGACCAAGCAGAGCTCTACATTTAC
GGTGCTATTTCGAATCTCTATGTTGCTATGCCCTCGTTTTTCACTATTGA
GGGATCTGATACTACCATTTCTGTAGGAGAAGAAAGCCAACGACGCTTAT
CAAGCCATCGAGAGTCGAACAGTATCCACATCAAGACCACCTTTGACCTT
TTTCATGAGATGAAAAAGGAAAAGCTCATCTCCAAGGAAAACCTAGAGTG
AGCAATGGACCACTTGGGCTCTGTGAAACAGTCCAAATGCCATAACAAAG
AAAATACGAGTTCCTTCTACATTGCTCTTGTAGCTCATTTGTGTGTTTGT
TTGTTTCTGTTTCCCACGTACAAATCATTCTGCCATCGTCAAAAAAGATC
TAAAGTGGGCGGGATTGCTACGAGACTGTTGTCATGATCTGATGTGTACA
CCTGCGGGTGAA
back to top

protein sequence of NO30G00090.1

>NO30G00090.1-protein ID=NO30G00090.1-protein|Name=NO30G00090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MTMLGLKAHPRHLPNTASSILLFTPRTFITTFLILSFSWTLFLVALQQFS
ERRCSQLRPDLTLFAGHINYELPFPVYYINMEQSSGRRERMELDFGGIWD
LRRSPAVDGMDIDIVLQLMGRMNYDDIHSSISDDRRQGTINGAELGCVLS
HLTAIRRAYLEGNEIAMIVEDDITPLLMPFWTNSLVDVINEAGNYSAGTW
DMVQMAWIWGMDETLYDRDAHNFGPDRHLLQTRFQFGTSAYVISKGGMGK
ILNAYFTDRTETGQIRLRKGGDQAELYIYGAISNLYVAMPSFFTIEGSDT
TISVGEESQRRLSSHRESNSIHIKTTFDLFHEMKKEKLISKENLE*
back to top

mRNA from alignment at chr30:38558..40366+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO30G00090.1 ID=NO30G00090.1|Name=NO30G00090.1|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at chr30:38558..40366+ (Nannochloropsis oceanica)
GTGTACCTGTGGTAATTGTTCAACCAGTGGCAAAGGATTAGGGTTCATAT
GCAAGAATAGAGTTACGAAATTCTCGACCCGTGCAATCAATGAATGTCTG
GACATTTAGTTTTACCACAATTACTTATGGCAAATTATCTTTGATTATTG
CTTTTTGAGCTTTAGATTGGCCTGGGGAGAAATATATGAGTAGCGCAGAG
TGCGTACGTGTTCTGAGGGGTATATAGAAAACCCGCCCCCCCTTTCCCCA
CCCGCTTTATCTTAATATATTGATGTGAAAGTGAATGAGAAATCAATATT
GAAGCTAGTTTGGATTTTGAATCTGACTCCTACTACGTATTTAGGGGCAT
ATTCGACCCTCGTAAAGGCCTCGCAGTGGGTATAGATATACTTGCTGTTT
GAGTGAAAACAAGATGACCATGTTAGGACTCAAAGCGCATCCCCGCCATT
TGCCAAATACGGCGTCATCGATCCTTCTGTTTACGCCGCGTACCTTTATA
ACCACATTTCTCATTTTATCCTTCTCATGGACCTTGTTCCTGGTGGCACT
ACAACAATTTTCTGAAAGACGGTGTTCTCAATTGAGGTACGACGAAAGAT
GATACTCCAGCTTTCAAAATGTCTGCCCGTACCTAATCAATCACCGAAAC
CCACAGACCAGATCTTACCCTTTTCGCTGGTCATATTAACTATGAACTTC
CCTTCCCAGTGTATTATATTAACATGGAGCAAAGCTCTGGGCGGCGAGAG
AGAATGGAGCTCGATTTCGGTGGTATATGGGACTTGCGAAGAAGTCCGGC
CGTGGATGGAATGGATATAGATATCGTCCTCCAGCTCATGGGCCGGATGA
ACTACGACGATATTCATTCGTCTATCTCAGACGACAGGCGTCAAGGCACC
ATCAACGGCGCAGAGCTTGGCTGTGTGCTATCACATCTTACAGCGATAAG
GCGCGCGTACCTCGAAGGGAACGAGATTGCCATGATTGTAGAAGATGATA
TCACCCCGTTACTCATGTTAGTACGCGTGGGATGGCTGATTTGCATTCTT
TCTTCTTGTCCTTACATGCACATTTCATTCACACCACCTGTAGGCCATTT
TGGACGAACTCACTCGTCGACGTTATCAACGAGGCAGGAAACTATTCAGC
TGGCACGTGGGACATGGTTCAGATGGCTTGGATTTGGGGCATGGATGAGA
CCTTATATGATCGAGATGCGCATAATTTTGGTCCAGACCGTCATCTGTTA
CAAACACGATTTCAATTCGGCACCTCAGCGTATGTCATTTCCAAGGGAGG
AATGGGAAAAATCCTCAATGCCTACTTCACTGACAGAACAGAGACCGGGC
AGATTCGCCTTCGAAAAGGGGGCGACCAAGCAGAGCTCTACATTTACGGT
GCTATTTCGAATCTCTATGTTGCTATGCCCTCGTTTTTCACTATTGAGGG
ATCTGATACTACCATTTCTGTAGGAGAAGAAAGCCAACGACGCTTATCAA
GCCATCGAGAGTCGAACAGTATCCACATCAAGACCACCTTTGACCTTTTT
CATGAGATGAAAAAGGAAAAGCTCATCTCCAAGGAAAACCTAGAGTGAGC
AATGGACCACTTGGGCTCTGTGAAACAGTCCAAATGCCATAACAAAGAAA
ATACGAGTTCCTTCTACATTGCTCTTGTAGCTCATTTGTGTGTTTGTTTG
TTTCTGTTTCCCACGTACAAATCATTCTGCCATCGTCAAAAAAGATCTAA
AGTGGGCGGGATTGCTACGAGACTGTTGTCATGATCTGATGTGTACACCT
GCGGGTGAA
back to top

Coding sequence (CDS) from alignment at chr30:38558..40366+

>NO30G00090.1 ID=NO30G00090.1|Name=NO30G00090.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr30:38558..40366+ (Nannochloropsis oceanica)
ATGACCATGTTAGGACTCAAAGCGCATCCCCGCCATTTGCCAAATACGGC
GTCATCGATCCTTCTGTTTACGCCGCGTACCTTTATAACCACATTTCTCA
TTTTATCCTTCTCATGGACCTTGTTCCTGGTGGCACTACAACAATTTTCT
GAAAGACGGTGTTCTCAATTGAGACCAGATCTTACCCTTTTCGCTGGTCA
TATTAACTATGAACTTCCCTTCCCAGTGTATTATATTAACATGGAGCAAA
GCTCTGGGCGGCGAGAGAGAATGGAGCTCGATTTCGGTGGTATATGGGAC
TTGCGAAGAAGTCCGGCCGTGGATGGAATGGATATAGATATCGTCCTCCA
GCTCATGGGCCGGATGAACTACGACGATATTCATTCGTCTATCTCAGACG
ACAGGCGTCAAGGCACCATCAACGGCGCAGAGCTTGGCTGTGTGCTATCA
CATCTTACAGCGATAAGGCGCGCGTACCTCGAAGGGAACGAGATTGCCAT
GATTGTAGAAGATGATATCACCCCGTTACTCATGCCATTTTGGACGAACT
CACTCGTCGACGTTATCAACGAGGCAGGAAACTATTCAGCTGGCACGTGG
GACATGGTTCAGATGGCTTGGATTTGGGGCATGGATGAGACCTTATATGA
TCGAGATGCGCATAATTTTGGTCCAGACCGTCATCTGTTACAAACACGAT
TTCAATTCGGCACCTCAGCGTATGTCATTTCCAAGGGAGGAATGGGAAAA
ATCCTCAATGCCTACTTCACTGACAGAACAGAGACCGGGCAGATTCGCCT
TCGAAAAGGGGGCGACCAAGCAGAGCTCTACATTTACGGTGCTATTTCGA
ATCTCTATGTTGCTATGCCCTCGTTTTTCACTATTGAGGGATCTGATACT
ACCATTTCTGTAGGAGAAGAAAGCCAACGACGCTTATCAAGCCATCGAGA
GTCGAACAGTATCCACATCAAGACCACCTTTGACCTTTTTCATGAGATGA
AAAAGGAAAAGCTCATCTCCAAGGAAAACCTAGAGTGA
back to top
Synonyms
Publications