NO30G00080.1, NO30G00080.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO30G00080.1
Unique Name	NO30G00080.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1934
Alignment location	chr30:33953..35886 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr30	genome	chr30:33953..35886 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO30G00080.1 vs.

BLAST of NO30G00080.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO30G00080	NO30G00080	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00080.1	NO30G00080.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO30G00080.1.cds1	NO30G00080.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr30:33953..35886+
coding sequence from alignment at chr30:33953..35886+

mRNA sequence

>NO30G00080.1 ID=NO30G00080.1|Name=NO30G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGGTGTTGGAAATGGAG
TTGGCAATGTTGATGAAGAACTGATGCAGGAACCAGACTGACAACCAGTG
CCACAATAAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCATTT
ATCTGCTACACAGATACCCAACGTCCCTCCACACTGCTGAGCATCAAGTA
GCTGTATCATCATGTAAGCAAAGGCGAGCCTTTGATAGAAGTGAAGCATT
CCGCTGGTCAAATGAGGAATAATTTAGAGGGAAAACGGTACGTATGGTCA
ACTTTGTGCCCTGCCGTCGTAACCAATATCTGCT

protein sequence of NO30G00080.1

>NO30G00080.1-protein ID=NO30G00080.1-protein|Name=NO30G00080.1|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MLHLSTLWKWTVPMSKQAQVLVSEAAWESERAQTEMRCTTRISYYIQSHN
KLVSYHTNRTGYSTSLLDTHRQRRHMLHLSTLWKWTVPMSKQAQVLVSEA
AWESERAQTEMRCTTRISYYIQSHNKLVSYHTNRTGYSTSLLDTHRQRRH
MLHLSTLWKWTVPMSKQAQVLVSEAAWESERAQTEMRCTTRISYYIQSHN
KLVSYHTNRTGYSTSLLDTHRQRRHMLHLSTLWKWTVPMSKQAQVLVSEA
AWESERAQTEMRCTTRISYYIQSHNKLVSYHTNRTGYSTSLLDTHRQRRH
MLHLSTLWKWTVPMSKQAQVLVSEAAWESERAQTEMRCTTRISYYIQSHN
KLVSYHTNRTGYSTSLLDTHRQRRHMLHLSTLWKWTVPMSKQAQVLVSEA
AWESERAQTEMRCTTRISYYIQSHNKLVSYHTNRTGYSTSLLDTHRQRRH
MLHLSTLWKWTVPMSKQAQVLVSEAAWESERAQTEMRCTTRISYYIQSHN
KLVSYHTNRTGYSTSLLDTHRQRRHMLHLSTLWKWTVPMSKQAQVVLEME
LAMLMKN*

mRNA from alignment at chr30:33953..35886+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO30G00080.1 ID=NO30G00080.1|Name=NO30G00080.1|organism=Nannochloropsis oceanica|type=mRNA|length=1934bp|location=Sequence derived from alignment at chr30:33953..35886+ (Nannochloropsis oceanica)
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGGTGTTGGAAATGGAG
TTGGCAATGTTGATGAAGAACTGATGCAGGAACCAGACTGACAACCAGTG
CCACAATAAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCATTT
ATCTGCTACACAGATACCCAACGTCCCTCCACACTGCTGAGCATCAAGTA
GCTGTATCATCATGTAAGCAAAGGCGAGCCTTTGATAGAAGTGAAGCATT
CCGCTGGTCAAATGAGGAATAATTTAGAGGGAAAACGGTACGTATGGTCA
ACTTTGTGCCCTGCCGTCGTAACCAATATCTGCT

Coding sequence (CDS) from alignment at chr30:33953..35886+

>NO30G00080.1 ID=NO30G00080.1|Name=NO30G00080.1|organism=Nannochloropsis oceanica|type=CDS|length=1674bp|location=Sequence derived from alignment at chr30:33953..35886+ (Nannochloropsis oceanica)
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGCTGGTGTCGGAGGCG
GCGTGGGAATCGGAGCGGGCGCAGACGGAGATGAGGTGCACGACCCGTAT
AAGCTATTACATCCAAAGCCACAATAAGCTGGTGTCGTACCACACCAACC
GTACTGGCTACAGCACAAGCCTGCTGGACACACACCGGCAGAGGCGCCAC
ATGCTCCATTTGTCGACACTGTGGAAGTGGACGGTGCCGATGTCGAAGCA
GGCGCAGGTGCTGGTGTCGGAGGCGGCGTGGGAATCGGAGCGGGCGCAGA
CGGAGATGAGGTGCACGACCCGTATAAGCTATTACATCCAAAGCCACAAT
AAGCTGGTGTCGTACCACACCAACCGTACTGGCTACAGCACAAGCCTGCT
GGACACACACCGGCAGAGGCGCCACATGCTCCATTTGTCGACACTGTGGA
AGTGGACGGTGCCGATGTCGAAGCAGGCGCAGGTGGTGTTGGAAATGGAG
TTGGCAATGTTGATGAAGAACTGA

Synonyms

Publications