Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr29 genome chr29:505370..509019 -
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G01610.1 vs.
Match: EWM21340.1 (endonuclease [Nannochloropsis gaditana])
HSP 1 Score: 201.8 bits (512), Expect = 5.300e-48
Identity = 154/303 (50.83%), Postives = 172/303 (56.77%), Query Frame = 0
Query: 260 APAASAATPDAQSSSSSSSSSTR--RSTSTSTSTSTSRNTSNRSSNGSTSSSCGWSGVEGAAGVGEDTLSAWRMPGVEGAAGVGGEALHAW---RIPRPFRRNVALRDGYRCCFCGCRLSYRTLTLDHVVPKCLGGEDSWENLASACMRCNSRKGSLRVEELGKINMRLLQAPYAPTALQLAYAYVDLLPAAILTQWGRYLEGPLAREAAKFRAFHAAFSL------PPSSPPSSAAAAAGKPMTSFLRVEEASLPQVMV--------TATAAVASARAKGDE--EEGAAPLSE---PLALST 539
AP SA + S SS R RST + + + + G + G EG AG G G G W R PRPFRRNVALRDGY CCFCG RLSYRTLTLDHVVP+CLGGEDSWENLASAC +CNSRKGSL V ELG+I+MRLL+ PYAPTALQLAYAYVDLLPAAIL QWGRYLEGPLAREAAK A HA FSL PPS S A +A G T ++ P+ +V A R K +E E+G LS PLA ST
Sbjct: 199 APWWSAVRSTLRGRVSVLSSYDRGVRSTHALHQLPSVVALTRQQTPGQRRQAGALEGREGEAGCKAG-----------GGRGEGDGERRFWPAARTPRPFRRNVALRDGYVCCFCGRRLSYRTLTLDHVVPRCLGGEDSWENLASACRQCNSRKGSLLVSELGRIDMRLLRVPYAPTALQLAYAYVDLLPAAILNQWGRYLEGPLAREAAKVSALHATFSLPTPHPTPPSFSKSGAQSAPGGSHTPCSVADDGPRPRNLVDVSPLPRTEARKEQCQPRMKTEEGGEDGGYGLSAPRGPLAWST 490
The following BLAST results are available for this feature:
BLAST of NO29G01610.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
500 1000 1500 2000 2500 3000 Expect = 5.30e-48 / Id = 50.83 Sequence EWM21340.1
Match Name E-value Identity Description
EWM21340.1 5.300e-48 50.83 endonuclease [Nannochloropsis gaditana] [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO29G01610.1 ID=NO29G01610.1|Name=NO29G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3434bp CCCCCTCTTCCCCCCCTCCCAAACCACTCCCCCTGTGTCTGCCTCGCCGC GGCCATCATCAAGGCTTTCTCCTCGGCCGCCCGCCGGGCCTGCTCCGCAG TCTCTTGCTGCGTCTGCTCTTGGTACGAGTAGTGCAGTTCCAGCGCCTCG GGATGGGCGGCCGCGAGGGCTTTAAGTTGCTCCGTGACGGACTGGCTGAG GCAGGTCACTTGCCGCAGCGTCAGGCCCAGCTCGTGCCCGATACTGGCGG CGAAGCTGGAAGGGAGGAGGGAGGGAGGGTGGGAGAGAGCGGTTGAGAAA CAAATTTTGAGGATGGATAACGGCCAATTATCAAGAGAGAAAATCAAGGA AAGTGGTTCGGTCAAGACTAGCCTGCCTTGGACGAACACAAGACACGTGC ATCCAAAGACATCCCACCACCATACCCCTCCAGCATCCCAACCCTTCCTC CCTTTTCTCCTTCTCCCCCCTGGCACTCACGCTTCGGGCTCAGGCAAGTG TGTATCGGTCACGTCCCACTCAATGTCGTCCTCAAAGTAGTCTTCACTGC CTTCCGCCAGCTGCACCTTGACATGCACCCGCACCTCGGGCAGTGGGGTG GGCGTGGGCGAGGAGGAACCCTTCTTCGCTTCAACAAATGCGGCAGACTT GGGCAAATTCATGTCGTGAATGGGTCCTGTGAGTGTAGGTTGGAAAGGAG CGGGGGGAAGAGTGAGAAAGAGGAAGTAATGACAACCAAGGGAGGAGATG GAGGGGGAGGGGGAGAGGGAGGGGAGGCTGGAGGGGTGGTCAAGCTCTTT TCACATACAACTTAAACGTACCAATAGCTGCCCATCCCCATCCTTTGGGT CGAAGTTGCACCATGGTTACTGCCGCACACAAAGGTTACGATCCTGACTA TTTAGGGGTGCTGTCCGTGCGCGGAAGCAAGGAATAAGCGAGGGAGAGCG ACGTGCGCTGCCTCGATGGGCGGGGAGGAAGGGCCAGATAAGCGCTCCTG CTGGAAATTTTACCGCAGCCCTATCTTGGGTAGTTTCCTGTGAGGTCGTG TGCGTGTGGTAGTAAATTGCTGTGTGAGGTGCTAGTTTGTCCACGAGTCC ACGAGAAGAAATCGGTCGTACAGCCCTCTTTCATCATGCCTTCATCGCGG TCTGCGACGCTTGGCGAACGATGATGCTCCTCTGCAGCAGTACGAGGTCT TCCCACACTATAGTGCCCACAAACCCCACACGCTCACGGCCCCGCCTCTG GCACAGCAATCATACAGGCAGGGCTGAAAAGTTTATTGTGCCACGATCGT GAGCTCCTCCGTCCCATTTGTCGCCCGGCTGCTCTCCCTCACATCGCAAG GACCGATTTATTTAATTTCTGAAGGCTTAAACCCGCTTTGAAAGCCCATA CTCAACTCGTCGTCCACACACTCACGCCCAGGTGACGCTTTCGACTGCTG GTAGGGTACGCAACGCACCGATCCAGTAAGTGCCGTCGAGCCGTCGAGTC CTATTATCGCCCTCCCTGAGGCACACAGTACAGAAATGCTGCTGAGACGC TTGCAGCAACGGACGCCCCGGGCAACCACCACGACTATCACTACGACAGC AAAACGACGGCGATCCTCATCTCCGCTCATGACCCGTGCCCTCTCGTCGA CTGCGGCCGTGGAGGATTTCTTGCGCGGCGTCGCCTCCACGTCCCCACAA CCCTCCTCGTCCTCGTCTTCCTGGAGACCCGAGGAAGCGCGCGAAGCTCA AACCATGCTTCCTCAACCCCAATACGATGGAGACTGGGAAATCCAAGCAG AGGAAGAGGAGCAGCAAGAACGAGTGGCGGGGAGACGTAGGGAAAAGCGA CACGCAGAGGAGGAGGAGGAGGAGGAGAATGAGGAGGTATGGGAGGCGGA AGGCCACTTGCGTCGGTTGAGGCCTCATGCATCCCTTAATCTCTTCGCAG CTGCCAGCTCTATCAACGACTATGGCATCCACAAAGAAAGTCATCCGCAC ACGGGTATGACAGCAGCAGCAGCAGCAACGGCAGCAGCCGCAGAAGAAGG CATTGTCCGGCGGCGCCTCGGCCAGCCCAACCTGCGATGTCCCGCTCTCG TCCTTAATCAAGACCTCACCCCTCTTACCCTCTTCCCCCTCACCATCGCG CCGTGGTGGTCTGCGATCCGCAGTACCCTGCGCGGTCGAGTAAGCGTGTT GGAAAGTTACGACAGGCGGGTTAGATCGACGCATGCCTTGCATCAACTCC CATCCGTAGTGGCCTTGACCCGGTTACAGACCCCTAGCTATAGCCACAAG CATTATGATGATGCTCCTGCCGCTTCTGCCGCTACTCCTGATGCACAAAG TAGTAGCAGTAGTAGTAGCAGTAGCACTCGTCGTAGTACAAGCACTAGTA CGAGTACAAGTACTAGTAGAAATACTAGTAATAGGAGCAGTAATGGTAGT ACCAGCAGCAGTTGTGGTTGGAGTGGTGTGGAGGGGGCAGCGGGCGTGGG GGAAGACACCCTATCTGCGTGGCGGATGCCGGGTGTGGAGGGTGCGGCGG GCGTAGGGGGAGAGGCCTTACATGCGTGGCGCATCCCGAGGCCGTTTAGA CGGAACGTGGCATTGAGAGACGGATACCGGTGTTGCTTCTGCGGGTGCCG CCTGTCGTACAGGACACTCACCTTGGACCACGTAGTTCCCAAGTGCCTGG GGGGGGAGGATAGCTGGGAGAACCTGGCGAGCGCCTGCATGCGGTGCAAC AGCCGGAAGGGGTCTCTGCGGGTGGAGGAGTTGGGCAAGATCAACATGAG GCTCTTGCAGGCCCCGTACGCCCCCACGGCGCTACAGCTGGCCTACGCCT ACGTCGACCTCCTCCCCGCCGCCATCCTCACTCAATGGGGCCGGTACCTC GAAGGACCTCTGGCCCGAGAAGCAGCCAAGTTCCGTGCCTTCCACGCCGC CTTCTCCCTCCCGCCCTCCTCTCCTCCCTCCTCTGCTGCTGCGGCTGCTG GTAAGCCTATGACGTCTTTCCTGAGAGTGGAAGAAGCATCATTGCCACAA GTTATGGTCACAGCAACAGCTGCAGTAGCATCTGCAAGGGCAAAGGGGGA TGAGGAGGAGGGAGCAGCTCCTCTTTCAGAGCCATTGGCCCTGTCGACGT AGACAGGGAGGAAGGAAGGGGAGGCAGATTTGTAAAATGTATAGCAGACT TTGTTGATTGGAACTTTAGAGATAGCAGCAAGGAAGAGTCACGGTGTCCA TTTATTCAAGATGAAATATCGAGAAATCTAGTTAATTCAGGAAGGAGACC AGAGGAAGAGAGACAGAGAGAGAGTGAGCGGTCGGTATTGTGAGCACAAG CCGTGCCATGGACACAGACTCTGCCGTGCCTACCGAAAAGGAAAAGTTAA GGGTGTGACTACTGGAAGTCTAATTGATTCCTAG back to top protein sequence of NO29G01610.1
>NO29G01610.1-protein ID=NO29G01610.1-protein|Name=NO29G01610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp MLLRRLQQRTPRATTTTITTTAKRRRSSSPLMTRALSSTAAVEDFLRGVA STSPQPSSSSSSWRPEEAREAQTMLPQPQYDGDWEIQAEEEEQQERVAGR RREKRHAEEEEEEENEEVWEAEGHLRRLRPHASLNLFAAASSINDYGIHK ESHPHTGMTAAAAATAAAAEEGIVRRRLGQPNLRCPALVLNQDLTPLTLF PLTIAPWWSAIRSTLRGRVSVLESYDRRVRSTHALHQLPSVVALTRLQTP SYSHKHYDDAPAASAATPDAQSSSSSSSSSTRRSTSTSTSTSTSRNTSNR SSNGSTSSSCGWSGVEGAAGVGEDTLSAWRMPGVEGAAGVGGEALHAWRI PRPFRRNVALRDGYRCCFCGCRLSYRTLTLDHVVPKCLGGEDSWENLASA CMRCNSRKGSLRVEELGKINMRLLQAPYAPTALQLAYAYVDLLPAAILTQ WGRYLEGPLAREAAKFRAFHAAFSLPPSSPPSSAAAAAGKPMTSFLRVEE ASLPQVMVTATAAVASARAKGDEEEGAAPLSEPLALST* back to top mRNA from alignment at chr29:505370..509019-
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G01610.1 ID=NO29G01610.1|Name=NO29G01610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3650bp|location=Sequence derived from alignment at chr29:505370..509019- (Nannochloropsis oceanica) CCCCCTCTTCCCCCCCTCCCAAACCACTCCCCCTGTGTCTGCCTCGCCGC
GGCCATCATCAAGGCTTTCTCCTCGGCCGCCCGCCGGGCCTGCTCCGCAG
TCTCTTGCTGCGTCTGCTCTTGGTACGAGTAGTGCAGTTCCAGCGCCTCG
GGATGGGCGGCCGCGAGGGCTTTAAGTTGCTCCGTGACGGACTGGCTGAG
GCAGGTCACTTGCCGCAGCGTCAGGCCCAGCTCGTGCCCGATACTGGCGG
CGAAGCTGGAAGGGAGGAGGGAGGGAGGGTGGGAGAGAGCGGTTGAGAAA
CAAATTTTGAGGATGGATAACGGCCAATTATCAAGAGAGAAAATCAAGGA
AAGTGGTTCGGTCAAGACTAGCCTGCCTTGGACGAACACAAGACACGTGC
ATCCAAAGACATCCCACCACCATACCCCTCCAGCATCCCAACCCTTCCTC
CCTTTTCTCCTTCTCCCCCCTGGCACTCACGCTTCGGGCTCAGGCAAGTG
TGTATCGGTCACGTCCCACTCAATGTCGTCCTCAAAGTAGTCTTCACTGC
CTTCCGCCAGCTGCACCTTGACATGCACCCGCACCTCGGGCAGTGGGGTG
GGCGTGGGCGAGGAGGAACCCTTCTTCGCTTCAACAAATGCGGCAGACTT
GGGCAAATTCATGTCGTGAATGGGTCCTGTGAGTGTAGGTTGGAAAGGAG
CGGGGGGAAGAGTGAGAAAGAGGAAGTAATGACAACCAAGGGAGGAGATG
GAGGGGGAGGGGGAGAGGGAGGGGAGGCTGGAGGGGTGGTCAAGCTCTTT
TCACATACAACTTAAACGTACCAATAGCTGCCCATCCCCATCCTTTGGGT
CGAAGTTGCACCATGGTTACTGCCGCACACAAAGGTTACGATCCTGACTA
TTTAGGGGTGCTGTCCGTGCGCGGAAGCAAGGAATAAGCGAGGGAGAGCG
ACGTGCGCTGCCTCGATGGGCGGGGAGGAAGGGCCAGATAAGCGCTCCTG
CTGGAAATTTTACCGCAGCCCTATCTTGGGTAGTTTCCTGTGAGGTCGTG
TGCGTGTGGTAGTAAATTGCTGTGTGAGGTGCTAGTTTGTCCACGAGTCC
ACGAGAAGAAATCGGTCGTACAGCCCTCTTTCATCATGCCTTCATCGCGG
TCTGCGACGCTTGGCGAACGATGATGCTCCTCTGCAGCAGTACGAGGTCT
TCCCACACTATAGTGCCCACAAACCCCACACGCTCACGGCCCCGCCTCTG
GCACAGCAATCATACAGGCAGGGCTGAAAAGTTTATTGTGCCACGATCGT
GAGCTCCTCCGTCCCATTTGTCGCCCGGCTGCTCTCCCTCACATCGCAAG
GACCGATTTATTTAATTTCTGAAGGCTTAAACCCGCTTTGAAAGCCCATA
CTCAACTCGTCGTCCACACACTCACGCCCAGGTGACGCTTTCGACTGCTG
GTAGGGTACGCAACGCACCGATCCAGTAAGTGCCGTCGAGCCGTCGAGTC
CTATTATCGCCCTCCCTGAGGCACACAGTACAGAAATGCTGCTGAGACGC
TTGCAGCAACGGACGCCCCGGGCAACCACCACGACTATCACTACGACAGC
AAAACGACGGCGATCCTCATCTCCGCTCATGACCCGTGCCCTCTCGTCGA
CTGCGGCCGTGGAGGATTTCTTGCGCGGCGTCGCCTCCACGTCCCCACAA
CCCTCCTCGTCCTCGTCTTCCTGGAGACCCGAGGAAGCGCGCGAAGCTCA
AACCATGCTTCCTCAACCCCAATACGATGGAGACTGGGAAATCCAAGCAG
AGGAAGAGGAGCAGCAAGAACGAGTGGCGGGGAGACGTAGGGAAAAGCGA
CACGCAGAGGAGGAGGAGGAGGAGGAGAATGAGGAGGTATGGGAGGCGGA
AGGCCACTTGCGTCGGTTGAGGCCTCATGCATCCCTTAATCTCTTCGCAG
CTGCCAGCTCTATCAACGACTATGGCATCCACAAAGAAAGTCATCCGCAC
ACGGGTATGACAGCAGCAGCAGCAGCAACGGCAGCAGCCGCAGAAGAAGG
CATTGTCCGGCGGCGCCTCGGCCAGCCCAACCTGCGATGTCCCGCTCTCG
TCCTTAATCAAGACCTCACCCCTCTTACCCTCTTCCCCCTCACCATCGCG
CCGTGGTGGTCTGCGATCCGCAGTACCCTGCGCGGTCGAGTAAGCGTGTT
GGAAAGTTACGACAGGCGGGTTAGATCGACGCATGCCTTGCATCAACTCC
CATCCGTAGTGGCCTTGACCCGGTTACAGACCCCTAGCTATAGCCACAAG
CATTATGATGATGCTCCTGCCGCTTCTGCCGCTACTCCTGATGCACAAAG
TAGTAGCAGTAGTAGTAGCAGTAGCACTCGTCGTAGTACAAGCACTAGTA
CGAGTACAAGTACTAGTAGAAATACTAGTAATAGGAGCAGTAATGGTAGT
ACCAGCAGCAGTTGTGGTTGGAGTGGTGTGGAGGGGGCAGCGGGCGTGGG
GGAAGACACCCTATCTGCGTGGCGGATGCCGGGTGTGGAGGGTGCGGCGG
GCGTAGGGGGAGAGGCCTTACATGCGTGGCGCATCCCGAGGCCGTTTAGA
CGGAACGTGGCATTGAGAGACGGATACCGGTGTTGCTTCTGCGGGTGCCG
CCTGTCGTACAGGACACTCACCTTGGACCACGTAGTTCCCAAGTGCCTGG
GGGGGGAGGATAGCTGGGAGAACCTGGCGAGCGCCTGCATGCGGTGCAAC
AGCCGGAAGGGGTCTCTGCGGGTGGAGGAGTTGGGCAAGATCAACATGAG
GCTCTTGCAGGCCCCGTACGCCCCCACGGCGCTACAG GTACGTACGTGCT
CCCTCACTCACTCGGGGGTACCGGGTGTTTGTCCGTGCAGTGGTCGTCGG
TTGTTCGAGGGGAGGGGCCTGCATTGCGAGTCTAGATAGGCCAGTTCCCT
CTTTCTCTCGTGTCTTCATGAGGTCACACTCCGTCTCCTCGTCTCACCCC
TCCCCCAACGCACAAAACCCTCACCCTCTCGTTGCACCTTTTTTCAATAA
AAGCTGGCCTACGCCTACGTCGACCTCCTCCCCGCCGCCATCCTCACTCA
ATGGGGCCGGTACCTCGAAGGACCTCTGGCCCGAGAAGCAGCCAAGTTCC
GTGCCTTCCACGCCGCCTTCTCCCTCCCGCCCTCCTCTCCTCCCTCCTCT
GCTGCTGCGGCTGCTGGTAAGCCTATGACGTCTTTCCTGAGAGTGGAAGA
AGCATCATTGCCACAAGTTATGGTCACAGCAACAGCTGCAGTAGCATCTG
CAAGGGCAAAGGGGGATGAGGAGGAGGGAGCAGCTCCTCTTTCAGAGCCA
TTGGCCCTGTCGACGTAG ACAGGGAGGAAGGAAGGGGAGGCAGATTTGTA
AAATGTATAGCAGACTTTGTTGATTGGAACTTTAGAGATAGCAGCAAGGA
AGAGTCACGGTGTCCATTTATTCAAGATGAAATATCGAGAAATCTAGTTA
ATTCAGGAAGGAGACCAGAGGAAGAGAGACAGAGAGAGAGTGAGCGGTCG
GTATTGTGAGCACAAGCCGTGCCATGGACACAGACTCTGCCGTGCCTACC
GAAAAGGAAAAGTTAAGGGTGTGACTACTGGAAGTCTAATTGATTCCTAG
back to top Coding sequence (CDS) from alignment at chr29:505370..509019-
>NO29G01610.1 ID=NO29G01610.1|Name=NO29G01610.1|organism=Nannochloropsis oceanica|type=CDS|length=1617bp|location=Sequence derived from alignment at chr29:505370..509019- (Nannochloropsis oceanica) ATGCTGCTGAGACGCTTGCAGCAACGGACGCCCCGGGCAACCACCACGAC TATCACTACGACAGCAAAACGACGGCGATCCTCATCTCCGCTCATGACCC GTGCCCTCTCGTCGACTGCGGCCGTGGAGGATTTCTTGCGCGGCGTCGCC TCCACGTCCCCACAACCCTCCTCGTCCTCGTCTTCCTGGAGACCCGAGGA AGCGCGCGAAGCTCAAACCATGCTTCCTCAACCCCAATACGATGGAGACT GGGAAATCCAAGCAGAGGAAGAGGAGCAGCAAGAACGAGTGGCGGGGAGA CGTAGGGAAAAGCGACACGCAGAGGAGGAGGAGGAGGAGGAGAATGAGGA GGTATGGGAGGCGGAAGGCCACTTGCGTCGGTTGAGGCCTCATGCATCCC TTAATCTCTTCGCAGCTGCCAGCTCTATCAACGACTATGGCATCCACAAA GAAAGTCATCCGCACACGGGTATGACAGCAGCAGCAGCAGCAACGGCAGC AGCCGCAGAAGAAGGCATTGTCCGGCGGCGCCTCGGCCAGCCCAACCTGC GATGTCCCGCTCTCGTCCTTAATCAAGACCTCACCCCTCTTACCCTCTTC CCCCTCACCATCGCGCCGTGGTGGTCTGCGATCCGCAGTACCCTGCGCGG TCGAGTAAGCGTGTTGGAAAGTTACGACAGGCGGGTTAGATCGACGCATG CCTTGCATCAACTCCCATCCGTAGTGGCCTTGACCCGGTTACAGACCCCT AGCTATAGCCACAAGCATTATGATGATGCTCCTGCCGCTTCTGCCGCTAC TCCTGATGCACAAAGTAGTAGCAGTAGTAGTAGCAGTAGCACTCGTCGTA GTACAAGCACTAGTACGAGTACAAGTACTAGTAGAAATACTAGTAATAGG AGCAGTAATGGTAGTACCAGCAGCAGTTGTGGTTGGAGTGGTGTGGAGGG GGCAGCGGGCGTGGGGGAAGACACCCTATCTGCGTGGCGGATGCCGGGTG TGGAGGGTGCGGCGGGCGTAGGGGGAGAGGCCTTACATGCGTGGCGCATC CCGAGGCCGTTTAGACGGAACGTGGCATTGAGAGACGGATACCGGTGTTG CTTCTGCGGGTGCCGCCTGTCGTACAGGACACTCACCTTGGACCACGTAG TTCCCAAGTGCCTGGGGGGGGAGGATAGCTGGGAGAACCTGGCGAGCGCC TGCATGCGGTGCAACAGCCGGAAGGGGTCTCTGCGGGTGGAGGAGTTGGG CAAGATCAACATGAGGCTCTTGCAGGCCCCGTACGCCCCCACGGCGCTAC AGCTGGCCTACGCCTACGTCGACCTCCTCCCCGCCGCCATCCTCACTCAA TGGGGCCGGTACCTCGAAGGACCTCTGGCCCGAGAAGCAGCCAAGTTCCG TGCCTTCCACGCCGCCTTCTCCCTCCCGCCCTCCTCTCCTCCCTCCTCTG CTGCTGCGGCTGCTGGTAAGCCTATGACGTCTTTCCTGAGAGTGGAAGAA GCATCATTGCCACAAGTTATGGTCACAGCAACAGCTGCAGTAGCATCTGC AAGGGCAAAGGGGGATGAGGAGGAGGGAGCAGCTCCTCTTTCAGAGCCAT TGGCCCTGTCGACGTAG back to top