NO29G00390.1, NO29G00390.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO29G00390.1
Unique NameNO29G00390.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr29:159070..161001 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr29genomechr29:159070..161001 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO29G00390.1 vs.
Match: EWM21264.1 (ran gtpase-activating protein 1 [Nannochloropsis gaditana])

HSP 1 Score: 226.1 bits (575), Expect = 2.600e-55
Identity = 180/334 (53.89%), Postives = 215/334 (64.37%), Query Frame = 0 
Query:  210 MSGDEGLAVL----------------GDAGGEEGERGVYQHAVGGSDGKGRSRRRGGGGKEGGGRLTGLKKVDLADNFFGGGEEGGTEGGLSVAGKLAEALGAQQGLEWLNLRDCGLEDTGVKAVLKSVSGKCRAVKRLDLSGNEMTRSCGKALGRAVARWGGREEGKGGLTHLYLEENELGSPGAKALAEGGGKGGLRRCGALLYLNLNYNEVGRTGAVAVVRALVEREGGWKGRGEGRKRMTRVEMEGNQVGEEGREQMRALLEREGLGIMLGPMEEDEEGEEEEEEEEEEE-EEEEEEEDEEDEEESEEEEEGEDEGGVEDLIKGVEKVTI 527
            MSGDEG   L                G   G +G           +   G S+   G  KEG  R+ GL+KVDLADN FGGG+         VA +LAEALG Q+ LE LNLRDCGLED GV+ +L+ +S KCR +KRLDLSGN++T   G ALGRAV RW         LTHL+LEENELG+ GAK L      G L+    L +L L+ NEV R+GAVAVV+ALV REGG +G GE   + TRVE+E N++GEEGR ++  L+  +G   MLGPMEEDEEGEEEEEEEEEEE EE EEEE+E +EEE EEEEE E+EGGVE+LIKGVE V I
Sbjct:    1 MSGDEGAEALASLLPHCPRLEDLRFSGTRAGRKGSAAFVLVLWEATRRPGESKTEEG--KEGE-RIRGLRKVDLADNLFGGGDG-------KVAQRLAEALGEQRKLESLNLRDCGLEDEGVRVLLQILSRKCRYLKRLDLSGNDLTADVGGALGRAVGRW-------KDLTHLHLEENELGNAGAKKLGR-YLSGSLK----LKHLKLSQNEVKRSGAVAVVQALVGREGGGEGWGEAVGKKTRVELESNEIGEEGRAELMELVTAKGYADMLGPMEEDEEGEEEEEEEEEEESEESEEEEEESEEEEEEEEEEEEEEGGVEELIKGVENVAI 312
The following BLAST results are available for this feature:
BLAST of NO29G00390.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM21264.12.600e-5553.89ran gtpase-activating protein 1 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO29G00390NO29G00390Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO29G00390.1NO29G00390.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO29G00390.1.cds1NO29G00390.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00390.1.cds2NO29G00390.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO29G00390.1.cds3NO29G00390.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO29G00390.1 ID=NO29G00390.1|Name=NO29G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
ATGGCCTCCACCTTCACCCCGGACCATGAAGACGAAGAAGCCCACCGACT
TTTCCTAGCCCGAAACCCTTCCTTCGTCCTCCGCGGAGCCCGTGAGAATG
TCGACGCCGCCCGTGCCGCTGCGCTCGTGGCCGAGTCCCTCGACCAGCTC
AGATTGGACCTTGCAAAAGCTGCAGACGCAGCGGCGGTGATAGAAACGAA
AGATGAGGAAAATGGAGGGAACGGAGGAAAGAAGGGAGGCTGTAAACGCG
TGCAGCTTTCTAACAAGTCCTTGTCTGAGGAAGCGGCCAAAGTGGTAGCC
GATGCTTTGAGAAACTTAGGGGAGGAAATCGAGCATGCTGATATCTCAGA
CATCATTGCTGGAAAACATGAGGATGAAGCGTTGAGGGTCCTCGAGATTG
TCTCGTCCTCCCTTGCCCACCAGCCCCTCATCAGCATCAATCTCAGCGAC
AACGCCCTGGGCGAGAAGGGATTGATTGCCTGCTCCTCCCTCCTCACTGC
CCAACCCCTCCTACAGTCCTTCTTCGTCTGCAATAACGGCCTCAGTGCCA
CGGCCACAGCCACCGTCGCCTCCCTCCTGATGTACCGCACTCCCACCCTC
CTTCGTGTGCTGCATTTTTACAACAACATGTCCGGGGATGAGGGACTTGC
GGTTCTCGGGGACGCGGGCGGGGAGGAAGGGGAGCGCGGCGTTTATCAAC
ACGCTGTGGGAGGAAGCGACGGGAAAGGGAGGAGCCGAAGGAGGGGGGGA
GGAGGGAAGGAGGGAGGGGGGAGGTTGACGGGATTGAAGAAGGTCGACTT
GGCGGATAACTTTTTTGGAGGGGGGGAGGAGGGCGGGACGGAGGGAGGGT
TGTCTGTGGCTGGGAAGCTGGCCGAGGCTCTAGGAGCACAGCAAGGTCTC
GAGTGGTTGAATTTAAGGGATTGTGGGTTGGAGGACACAGGGGTGAAGGC
GGTACTGAAGAGCGTGAGTGGGAAATGCCGAGCCGTTAAGCGACTGGACC
TGTCGGGGAATGAGATGACGAGGTCTTGCGGCAAGGCTCTGGGGAGGGCA
GTGGCGAGGTGGGGAGGGAGGGAGGAAGGAAAAGGGGGGTTAACGCATTT
ATATCTGGAGGAGAACGAATTGGGGAGTCCGGGAGCAAAGGCACTGGCGG
AGGGAGGGGGGAAGGGAGGGTTGAGGCGTTGTGGGGCGTTACTGTATTTG
AATTTAAATTATAACGAGGTGGGACGGACGGGAGCCGTGGCCGTGGTGAG
GGCGCTGGTGGAGAGGGAGGGAGGGTGGAAGGGAAGGGGGGAGGGCAGGA
AGAGGATGACGAGGGTGGAGATGGAGGGGAATCAGGTGGGGGAAGAAGGG
AGGGAGCAGATGAGGGCGTTGTTGGAAAGGGAGGGATTGGGCATTATGCT
AGGGCCGATGGAGGAGGATGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGAGGAGGACGAGGAG
GAGAGTGAGGAGGAGGAGGAAGGGGAGGATGAGGGAGGGGTGGAGGACTT
GATCAAGGGGGTGGAGAAGGTGACGATATAA
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protein sequence of NO29G00390.1

>NO29G00390.1-protein ID=NO29G00390.1-protein|Name=NO29G00390.1|organism=Nannochloropsis oceanica|type=polypeptide|length=527bp
MASTFTPDHEDEEAHRLFLARNPSFVLRGARENVDAARAAALVAESLDQL
RLDLAKAADAAAVIETKDEENGGNGGKKGGCKRVQLSNKSLSEEAAKVVA
DALRNLGEEIEHADISDIIAGKHEDEALRVLEIVSSSLAHQPLISINLSD
NALGEKGLIACSSLLTAQPLLQSFFVCNNGLSATATATVASLLMYRTPTL
LRVLHFYNNMSGDEGLAVLGDAGGEEGERGVYQHAVGGSDGKGRSRRRGG
GGKEGGGRLTGLKKVDLADNFFGGGEEGGTEGGLSVAGKLAEALGAQQGL
EWLNLRDCGLEDTGVKAVLKSVSGKCRAVKRLDLSGNEMTRSCGKALGRA
VARWGGREEGKGGLTHLYLEENELGSPGAKALAEGGGKGGLRRCGALLYL
NLNYNEVGRTGAVAVVRALVEREGGWKGRGEGRKRMTRVEMEGNQVGEEG
REQMRALLEREGLGIMLGPMEEDEEGEEEEEEEEEEEEEEEEEEDEEDEE
ESEEEEEGEDEGGVEDLIKGVEKVTI*
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mRNA from alignment at chr29:159070..161001-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00390.1 ID=NO29G00390.1|Name=NO29G00390.1|organism=Nannochloropsis oceanica|type=mRNA|length=1932bp|location=Sequence derived from alignment at chr29:159070..161001- (Nannochloropsis oceanica)
ATGGCCTCCACCTTCACCCCGGACCATGAAGACGAAGAAGCCCACCGACT
TTTCCTAGCCCGAAACCCTTCCTTCGTCCTCCGCGGAGCCCGTGAGAATG
TCGACGCCGCCCGTGCCGCTGCGCTCGTGGCCGAGTCCCTCGACCAGCTC
AGATTGGACCTTGCAAAAGCTGCAGACGCAGCGGCGGTGATAGAAACGAA
AGATGAGGAAAATGGAGGGAACGGAGGAAAGAAGGGAGGCTGTAAACGCG
TGCAGCTTTCTAACAAGTCCTTGTCTGAGGAAGCGGCCAAAGTGGTAGCC
GATGCTTTGAGAAACTTAGGGGAGGAAATCGAGCATGCTGATATCTCAGA
CATCATTGCTGGAAAACATGAGGATGAAGCGTTGAGGGTCCTCGAGATTG
GTAAGTTTACAAGGAATGGAGGGAAGGAGGGAAGTAAGTAGGGAAGGAGG
GACGGAGGGAGGGAAGGGGATGTCTATGATGATGTAATTATTTCTGCTGC
ATTTATGATGGCAGAAAATGCGGCGCATAGCATGCAGTAGCTAAGCAAAT
TGATGCCATTAGTTTAATGCGCAGGTGCTTTTTTTTCTTTGTGCCTCATG
TCACGTGCGATGGAGCATCCACCTTCCATCCATCCACTCATCGCCCCTCT
ATCTACCTACCTACCTACCTACCTCCCTCCCTCCCTCCCTCTCCCTCCTC
TTAGTCTCGTCCTCCCTTGCCCACCAGCCCCTCATCAGCATCAATCTCAG
CGACAACGCCCTGGGCGAGAAGGGATTGATTGCCTGCTCCTCCCTCCTCA
CTGCCCAACCCCTCCTACAGTCCTTCTTCGTCTGCAATAACGGCCTCAGT
GCCACGGCCACAGCCACCGTCGCCTCCCTCCTGATGTACCGCACTCCCAC
CCTCCTTCGTGTGCTGCATTTTTACAACAACATGTCCGGGGATGAGGGTG
CGGTGGCGTTTGCTTCCCTTTTGCCTCACTGCCCTTTACTGGAGGACTTG
CGGTTCTCGGGGACGCGGGCGGGGAGGAAGGGGAGCGCGGCGTTTATCAA
CACGCTGTGGGAGGAAGCGACGGGAAAGGGAGGAGCCGAAGGAGGGGGGG
AGGAGGGAAGGAGGGAGGGGGGAGGTTGACGGGATTGAAGAAGGTCGACT
TGGCGGATAACTTTTTTGGAGGGGGGGAGGAGGGCGGGACGGAGGGAGGG
TTGTCTGTGGCTGGGAAGCTGGCCGAGGCTCTAGGAGCACAGCAAGGTCT
CGAGTGGTTGAATTTAAGGGATTGTGGGTTGGAGGACACAGGGGTGAAGG
CGGTACTGAAGAGCGTGAGTGGGAAATGCCGAGCCGTTAAGCGACTGGAC
CTGTCGGGGAATGAGATGACGAGGTCTTGCGGCAAGGCTCTGGGGAGGGC
AGTGGCGAGGTGGGGAGGGAGGGAGGAAGGAAAAGGGGGGTTAACGCATT
TATATCTGGAGGAGAACGAATTGGGGAGTCCGGGAGCAAAGGCACTGGCG
GAGGGAGGGGGGAAGGGAGGGTTGAGGCGTTGTGGGGCGTTACTGTATTT
GAATTTAAATTATAACGAGGTGGGACGGACGGGAGCCGTGGCCGTGGTGA
GGGCGCTGGTGGAGAGGGAGGGAGGGTGGAAGGGAAGGGGGGAGGGCAGG
AAGAGGATGACGAGGGTGGAGATGGAGGGGAATCAGGTGGGGGAAGAAGG
GAGGGAGCAGATGAGGGCGTTGTTGGAAAGGGAGGGATTGGGCATTATGC
TAGGGCCGATGGAGGAGGATGAGGAAGGGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGAGGAGGACGAGGA
GGAGAGTGAGGAGGAGGAGGAAGGGGAGGATGAGGGAGGGGTGGAGGACT
TGATCAAGGGGGTGGAGAAGGTGACGATATAA
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Coding sequence (CDS) from alignment at chr29:159070..161001-

>NO29G00390.1 ID=NO29G00390.1|Name=NO29G00390.1|organism=Nannochloropsis oceanica|type=CDS|length=1581bp|location=Sequence derived from alignment at chr29:159070..161001- (Nannochloropsis oceanica)
ATGGCCTCCACCTTCACCCCGGACCATGAAGACGAAGAAGCCCACCGACT
TTTCCTAGCCCGAAACCCTTCCTTCGTCCTCCGCGGAGCCCGTGAGAATG
TCGACGCCGCCCGTGCCGCTGCGCTCGTGGCCGAGTCCCTCGACCAGCTC
AGATTGGACCTTGCAAAAGCTGCAGACGCAGCGGCGGTGATAGAAACGAA
AGATGAGGAAAATGGAGGGAACGGAGGAAAGAAGGGAGGCTGTAAACGCG
TGCAGCTTTCTAACAAGTCCTTGTCTGAGGAAGCGGCCAAAGTGGTAGCC
GATGCTTTGAGAAACTTAGGGGAGGAAATCGAGCATGCTGATATCTCAGA
CATCATTGCTGGAAAACATGAGGATGAAGCGTTGAGGGTCCTCGAGATTG
TCTCGTCCTCCCTTGCCCACCAGCCCCTCATCAGCATCAATCTCAGCGAC
AACGCCCTGGGCGAGAAGGGATTGATTGCCTGCTCCTCCCTCCTCACTGC
CCAACCCCTCCTACAGTCCTTCTTCGTCTGCAATAACGGCCTCAGTGCCA
CGGCCACAGCCACCGTCGCCTCCCTCCTGATGTACCGCACTCCCACCCTC
CTTCGTGTGCTGCATTTTTACAACAACATGTCCGGGGATGAGGGACTTGC
GGTTCTCGGGGACGCGGGCGGGGAGGAAGGGGAGCGCGGCGTTTATCAAC
ACGCTGTGGGAGGAAGCGACGGGAAAGGGAGGAGCCGAAGGAGGGGGGGA
GGAGGGAAGGAGGGAGGGGGGAGGTTGACGGGATTGAAGAAGGTCGACTT
GGCGGATAACTTTTTTGGAGGGGGGGAGGAGGGCGGGACGGAGGGAGGGT
TGTCTGTGGCTGGGAAGCTGGCCGAGGCTCTAGGAGCACAGCAAGGTCTC
GAGTGGTTGAATTTAAGGGATTGTGGGTTGGAGGACACAGGGGTGAAGGC
GGTACTGAAGAGCGTGAGTGGGAAATGCCGAGCCGTTAAGCGACTGGACC
TGTCGGGGAATGAGATGACGAGGTCTTGCGGCAAGGCTCTGGGGAGGGCA
GTGGCGAGGTGGGGAGGGAGGGAGGAAGGAAAAGGGGGGTTAACGCATTT
ATATCTGGAGGAGAACGAATTGGGGAGTCCGGGAGCAAAGGCACTGGCGG
AGGGAGGGGGGAAGGGAGGGTTGAGGCGTTGTGGGGCGTTACTGTATTTG
AATTTAAATTATAACGAGGTGGGACGGACGGGAGCCGTGGCCGTGGTGAG
GGCGCTGGTGGAGAGGGAGGGAGGGTGGAAGGGAAGGGGGGAGGGCAGGA
AGAGGATGACGAGGGTGGAGATGGAGGGGAATCAGGTGGGGGAAGAAGGG
AGGGAGCAGATGAGGGCGTTGTTGGAAAGGGAGGGATTGGGCATTATGCT
AGGGCCGATGGAGGAGGATGAGGAAGGGGAGGAGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGACGAGGAGGACGAGGAG
GAGAGTGAGGAGGAGGAGGAAGGGGAGGATGAGGGAGGGGTGGAGGACTT
GATCAAGGGGGTGGAGAAGGTGACGATATAA
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Synonyms
Publications