Alignments
The following features are aligned
Aligned Feature Feature Type Alignment Location
chr29 genome chr29:125414..128728 +
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO29G00310.1 vs.
Match: XP_008864367.1 (hypothetical protein H310_02584 [Aphanomyces invadans]; ETW06292.1 hypothetical protein H310_02584 [Aphanomyces invadans])
HSP 1 Score: 528.5 bits (1360), Expect = 3.100e-146
Identity = 259/502 (51.59%), Postives = 327/502 (65.14%), Query Frame = 0
Query: 211 HAIVPRRPRTNRHRNRN---------RYKPCQRSLHVAAVLEDKLIVFGGYQGTERVADCYLYDFLRRRWSVVVPAPGGHPPPSPRDRHVGVVYKRTFYIFGGFDGSQRVNDFMGFSLDTREWRSVVCLMGSAPTPRHSHTGVVYKDKFYVLTGYDGSYRNDFHAFSFLQSAWAPVPCAGKIPRPRYRATSCVKNDNLILFGGHDGTNHLND---------------------------SAVIHHESMYVFGGSTGSAMDDLHELNLEERRWRPIIPPSGSLRPGQRFCHVACVWKHQMLVFGGYDGSQRLNDFWAFKFGPALLACQIPEPSLLPDLRGFVNSQALSDVTFIVEGQRVYAHKILCVRSPYFRALFTGGMREAREGEVVLPDVRYPIFLSLLEYLYTDSLTIDLPTSFQLFEAADRFGVERLKKMCEHKMLTSLSLDNAAMILYTADVYHAAGLRQKCLGFILQNFDAVSKTEGFVEMGHRNVDLVFEILKKR 677
H + P +P + R+ PC RSLHV A+ +D + VFGGY G+ RV D + Y+F R+ WS V+ PP+PRDRHV V+K FY+F GFDGS RVNDF+GF+ T++W VV + G P+PRHSH+ VVY + FYV GYDGSYRNDF+ F F +AW+ V G+ PRPRYRA+ ++FGGHDG+ HLND AV H SMY+FGGSTGSAM+D HELNLE W+PI PGQRFCHV CV+ +++FGGYDGS RLNDF F+FG + IP P L+ DLR VNS +SD+TFIVEG VYAHKILCVR YF+A+ T M E+R EVV+ DVR IFL+ LEYLYTD + +D+ + +LF AADR+GV+RLKK+CE KML+SL ++NAA IL+ ADV+ A LR++C+ F+L NFDAV+KT F EMG NVDLVFE+LK+R
Sbjct: 91 HVVKPSKPASGASSARSWITVPCQNPSAAPCHRSLHVCAIHKDSMYVFGGYDGSNRVNDFFEYNFKRKVWSQVMALG---TPPTPRDRHVAAVHKDRFYVFAGFDGSSRVNDFIGFNFVTQQWSPVVVMSGMPPSPRHSHSAVVYDNSFYVFGGYDGSYRNDFYEFQFENAAWSTVASTGRSPRPRYRASLVTHKTTCLVFGGHDGSRHLNDVNVFNFVLKTWTLLVVEGPAPIPRDSHVAVTHGCSMYIFGGSTGSAMNDFHELNLESNTWQPI--AFNGPAPGQRFCHVGCVYDDSLILFGGYDGSNRLNDFKEFRFGEE-IELDIPPPCLVNDLRDMVNSNVMSDITFIVEGVPVYAHKILCVRCSYFKAMLTSEMLESRAREVVISDVRRSIFLAFLEYLYTDHVNVDVEAAMELFVAADRYGVDRLKKICESKMLSSLCIENAASILHAADVHSATILRERCIAFMLNNFDAVTKTNAFEEMGRINVDLVFELLKRR 586
The following BLAST results are available for this feature:
BLAST of NO29G00310.1 vs.
Analysis Date: 2017-10-25 (
Homology annotation for N. oceanica IMET1 )
Total hits: 1
200 400 600 800 1000 1200 1400 1600 1800 2000 Expect = 3.10e-146 / Id = 51.59 Sequence XP_008864367.1
Match Name E-value Identity Description
XP_008864367.1 3.100e-146 51.59 hypothetical protein H310_02584 [Aphanomyces invad... [more]
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Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence
>NO29G00310.1 ID=NO29G00310.1|Name=NO29G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=2031bp ATGTCATCGATACCGTCCTTTCCTTTTGTCTCCTCGCTCCCAAACGTAAA TGTTGCTTCCGGGCTGAATGCTGGCGCTGCTGGGGGTAGCGGCGGCGATG GAGAAGGGGACGGAGGTGGGGATGCACTTGAGGAAATGGTAGCTCCTTCC TTGGGCAATTTATCACTTTCCTCCCCCGATGCTAGCGCTAATGTCGCTGC TGTGGGAGAAGAAGTGACAAATCGTGCCCGCGCAGCCAGCAGCGGCTGCA GTGGTGGCTGTCTCAACAGCAGCAGCAGCAGCAGCAAAAGCAGCGGAAGA AACAGCAGCAGCAGCAGCAGCAGCAGTGGCAAAAAGACGAGGCGTAAGCG TGATTTCGCGATGAAAACCCCGGCACTGGTCTCGCCGACTTTAGACGCAA CGTCGTTGGGGGAATGGGTCCGCCTTGATAGAGACTCCGACGACGAGGAC GAGGACGAGAAGCAGGAGGAGCAGGGGGAAGGTGTGCTGGAGGAGGAGGA CGAAGAAGGGCATGGAGAGGAGGCTGAAGAGGAGGAGGAAGAGGAGGAGG ATAGCGGGGAGGAAGGGGAGGCAGGTGTCAACAACCACCCCTCAGGAGCA GGCACAAGCCTTCCTCCTCCTCCTCATACTCATGCCATCGTTCCACGTCG CCCCCGTACCAACCGCCATCGTAATCGTAACCGTTATAAACCCTGTCAAC GTTCGCTGCACGTTGCCGCCGTGCTTGAGGACAAATTGATAGTCTTCGGG GGCTATCAAGGCACTGAGCGTGTCGCAGATTGTTACTTGTACGATTTTCT CCGACGGCGGTGGAGTGTAGTGGTGCCAGCGCCGGGAGGGCATCCCCCTC CCAGTCCTCGGGACAGGCATGTGGGTGTGGTGTACAAGCGAACTTTCTAT ATCTTCGGGGGCTTTGATGGCTCCCAGCGAGTGAATGACTTCATGGGCTT CAGCCTTGATACCCGGGAGTGGCGATCAGTGGTGTGTCTGATGGGCTCGG CGCCCACGCCACGGCACTCGCACACGGGTGTAGTTTACAAGGACAAATTC TACGTGCTTACCGGGTACGATGGGAGCTACCGGAATGATTTCCACGCGTT TTCCTTCCTGCAGTCCGCCTGGGCGCCAGTCCCGTGCGCCGGTAAAATCC CCAGGCCTCGGTACCGCGCGACATCATGTGTGAAGAACGACAATCTCATT TTATTTGGAGGCCACGACGGCACCAACCACTTGAATGATTCGGCCGTTAT CCACCACGAGAGCATGTACGTCTTCGGCGGGTCCACAGGCAGTGCCATGG ATGACCTCCACGAGCTTAACCTTGAGGAAAGGCGATGGCGGCCAATCATC CCTCCGTCCGGAAGTCTCCGCCCTGGCCAACGATTCTGCCACGTGGCGTG CGTGTGGAAGCACCAGATGCTGGTTTTTGGGGGCTACGACGGCTCTCAAC GCCTGAATGACTTTTGGGCCTTCAAGTTCGGTCCTGCCCTTCTGGCCTGC CAAATTCCCGAGCCCTCCCTCCTTCCCGACCTCCGCGGCTTCGTCAACAG CCAAGCACTCTCGGACGTTACCTTCATCGTGGAGGGCCAGCGGGTTTATG CTCACAAAATCCTCTGTGTCCGCTCTCCCTACTTCCGGGCATTGTTCACC GGCGGGATGAGGGAGGCCAGAGAGGGGGAAGTGGTGCTGCCAGACGTTCG CTACCCCATTTTTCTCTCCCTCCTCGAGTACCTCTACACGGACTCCCTGA CCATCGACCTGCCAACGTCCTTCCAGCTGTTTGAAGCTGCCGACCGTTTC GGAGTGGAACGGCTTAAAAAAATGTGCGAGCACAAGATGCTCACGTCCCT CTCGCTGGACAACGCGGCTATGATTCTATACACCGCCGATGTCTACCACG CCGCGGGCTTGCGGCAAAAGTGCTTGGGATTCATCCTCCAGAACTTCGAC GCCGTGAGCAAGACGGAGGGTTTTGTGGAGATGGGCCATCGGAACGTGGA TTTGGTCTTTGAGATCTTGAAGAAGCGGTAG back to top protein sequence of NO29G00310.1
>NO29G00310.1-protein ID=NO29G00310.1-protein|Name=NO29G00310.1|organism=Nannochloropsis oceanica|type=polypeptide|length=677bp MSSIPSFPFVSSLPNVNVASGLNAGAAGGSGGDGEGDGGGDALEEMVAPS LGNLSLSSPDASANVAAVGEEVTNRARAASSGCSGGCLNSSSSSSKSSGR NSSSSSSSSGKKTRRKRDFAMKTPALVSPTLDATSLGEWVRLDRDSDDED EDEKQEEQGEGVLEEEDEEGHGEEAEEEEEEEEDSGEEGEAGVNNHPSGA GTSLPPPPHTHAIVPRRPRTNRHRNRNRYKPCQRSLHVAAVLEDKLIVFG GYQGTERVADCYLYDFLRRRWSVVVPAPGGHPPPSPRDRHVGVVYKRTFY IFGGFDGSQRVNDFMGFSLDTREWRSVVCLMGSAPTPRHSHTGVVYKDKF YVLTGYDGSYRNDFHAFSFLQSAWAPVPCAGKIPRPRYRATSCVKNDNLI LFGGHDGTNHLNDSAVIHHESMYVFGGSTGSAMDDLHELNLEERRWRPII PPSGSLRPGQRFCHVACVWKHQMLVFGGYDGSQRLNDFWAFKFGPALLAC QIPEPSLLPDLRGFVNSQALSDVTFIVEGQRVYAHKILCVRSPYFRALFT GGMREAREGEVVLPDVRYPIFLSLLEYLYTDSLTIDLPTSFQLFEAADRF GVERLKKMCEHKMLTSLSLDNAAMILYTADVYHAAGLRQKCLGFILQNFD AVSKTEGFVEMGHRNVDLVFEILKKR* back to top mRNA from alignment at chr29:125414..128728+
Legend: polypeptide CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO29G00310.1 ID=NO29G00310.1|Name=NO29G00310.1|organism=Nannochloropsis oceanica|type=mRNA|length=3315bp|location=Sequence derived from alignment at chr29:125414..128728+ (Nannochloropsis oceanica)ATGTCATCGATACCGTCCTTTCCTTTTGTCTCCTCGCTCCCAAACGTAAA
TGTTGCTTCCGGGCTGAATGCTGGCGCTGCTGGGGGTAGCGGCGGCGATG
GAGAAGGGGACGGAGGTGGGGATGCACTTGAGGAAATGGTAGCTCCTTCC
TTGGGCAATTTATCACTTTCCTCCCCCGATGCTAGCGCTAATGTCGCTGC
TGTGGGAGAAGAAGTGACAAATCGTGCCCGCGCAGCCAGCAGCGGCTGCA
GTGGTGGCTGTCTCAACAGCAGCAGCAGCAGCAGCAAAAGCAGCGGAAGA
AACAGCAGCAGCAGCAGCAGCAGCAGTGGCAAAAAGACGAGGCGTAAGCG
TGATTTCGCGATGAAAACCCCGGCACTGGTCTCGCCGACTTTAGACGCAA
CGTCGTTGGGGGAATGGGTCCGCCTTGATAGAGACTCCGACGACGAGGAC
GAGGACGAGAAGCAGGAGGAGCAGGGGGAAGGTGTGCTGGAGGAGGAGGA
CGAAGAAGGGCATGGAGAGGAGGCTGAAGAGGAGGAGGAAGAGGAGGAGG
ATAGCGGGGAGGAAGGGGAGGCAGGTGTCAACAACCACCCCTCAGGAGCA
GGCACAAGCCTTCCTCCTCCTCCTCATACTCATGCCATCGTTCCACGTCG
CCCCCGTACCAACCGCCATCGTAATCGTAACCGTTATAAACCCTGTCAAC
GTTCGCTGCACGTTGCCGCCGTGCTTGAGGACAAATTGATAGTCTTCGGG
GGCTATCAAGGCACTGAGCGTGTCGCAGATTGTTACTTGTACGATTTTCT
CCGACGGCGGTGGAGTGTAGTGGTGCCAGCGCCGGGAGGGCATCCCCCTC
CCAGTCCTCGGGACAGGCATGTGGGTGTGGTGTACAAGCGAACTTTCTAT
ATCTTCGGGGGCTTTGATGGCTCCCAGCGAGTGAATGACTTCATGGGCTT
CAGCCTTGATACCCGGGAGTGGCGATCAGTGGTGTGTCTGATGGGCTCGG
CGCCCACGCCACGGCACTCGCACACGGGTGTAGTTTACAAGGACAAATTC
TACGTGCTTACCGG GTGAATGAAGAGACCGAGGGAGGGAGACAGGATGGG
GGGATGGGAGAGAGGGAGGAAGGACGGGAGGGAAAGGACTCTGAACTTCC
AAATAAGGGATCTCAACAGCCTCGTCTCTCTCTCCTTTTTCCTCCCTCCC
TCCTTCCCTCCCTCCTTCCCTCCCTCCTTCCCTCCAGGTACGATGGGAGC
TACCGGAATGATTTCCACGCGTTTTCCTTCCTGCAGTCCGCCTGGGCGCC
AGTCCCGTGCGCCGGTAAAATCCCCAGGCCTCGGTACCGCGCGACATCAT
GTGTGAAG GTAGGGGGGGAGGGAGGGACGGAGGGAGGGACGGAGGGAAGG
GGATCGAGAGGAGTCCATGGAATAACATGAAACCGAAATGGCCCCATTCC
TCACCCTTCCCTCCCTCCTTCCCTCCCTCCGATTCCTTTCCTCCCTCGCT
TCCCCTCCTTCCTCATCAGAACGACAATCTCATTTTATTTGGAGGCCACG
ACGGCACCAACCACTTGAATGAT GTCTCCCTCTTTCACTTCCCCTCCTCC
ACCTGGACCGTGCTGGAGATCTCTCCCGGCGCCCTCTACCCTCCCCCCTT
CCCCGCGATTCCCAGTCGGCCGTTATCCACCACGAGA GTAAGATGATGAT
AAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCGATATCTTCTTCACTGG
GGGAGTGCCTTGGATGCCCTCCGCGAGCTCTATCGGGGAGTAAATCACCA
CGCAACCACCGACTCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTAGGCATGTACGTCTTCGGC
GGGTCCACAGGCAGTGCCATGGATGACCTCCACGAGCTTAACCTTGAGGA
AAGGCGATGGCGGCCAATCATCCCTCCGTCCGGAAGTCTCCGCCCTGGCC
AACGATTCTGCCACGTGGCGTGCGTGTGGAAGCACCAGATGCTGGTTTTT
GGGGGCTACGACGGCTCTCAACG GTAAGGCGAAGAGGGAAGGAGGGAGGG
AGGGAGGGAGAAAGAGATTGAGGTCACAAGCGTAGCCCTTGCTCTTGATG
TCTCATCCTGCTCCCCTCTCCCTCCCTCCTTCCCTCCTTCCCTCCTTCCC
TCCTTCCCTCCCCCCTTCCCTCCCTCCGTAGCCTGAATGACTTTTGGGCC
TTCAAGTTCGGTCCTGCCCTTCTGGCCTGCCAAATTCCCGAGCCCTCCCT
CCTTCCCGACCTCCGCGGCTTCGTCAACAGCCAAGCACTCTCGGACGTTA
CCTTCATCGTGGAGGGCCAGCGGGTTTATGCTCACAAAATCCTCTGTGTC
CGCTCTCCCTACTTCCGGGCATT GTGAGCCTTTGCGCCCAACCAACCCTC
CCTCCCTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCCTCCCTCTCTGCA
TTTCAATCTAGCGGGCCCACGCCTACCTGTCCTTTGACTCTCCCTCCCTC
CCTCCCTCCTCCAGGTTCACCGGCGGGATGAGGGAGGCCAGAGAGGGGGA
AGTGGTGCTGCCAGACGTTCGCTACCCCATTTTTCTCTCCCTCCTCGAGT
ACCTCTACACGGACT GTAAGGACCGAGAGGGAGGAGAGAGGGAAGGGAAG
GAAGATAGTGGCCGTTTGCCACGGACATCACCGATGGATGAACCTTCCCT
CCCTCCCTCTCTCCCTCCCTACCTCCCTTGTAGCCCTGACCATCGACCTG
CCAACGTCCTTCCAGCTGTTTGAAGCTGCCGACCGTTTCGGAGTGGAACG
GCTTAAAAAAATGTGCGAGCACAAGATGCTCACGTCCCTCTCGCTGGACA
ACGCGGCTATGATTCTATACACCGCCGATGTCTACCACGCCGCGGGCTTG
CGGCAAAAGTGCTTGGGATTCATCCTCCAG GTACCTCTTCGCCCCCTCCC
TCCCTCCCTCCCTCTCTCTGATCTCCATCAATTTGGTGACTTTTCAATTT
TTTTAATGAAAGAATGTAGACGTGCCTGGATGCGAAGGGTTGGATTCGTC
TCTGGTATGAAAAATCTAAGCCATGTGTATTTGCGTGTATGGAGCCTCCT
CGACGTCATCCTCCTTCTCACGCGTGTCCCTCACCCTCCCTCCCTCCCTC
CCTCCCTCACTCCCTCCCTTCCCAGAACTTCGACGCCGTGAGCAAGACGG
AGGGTTTTGTGGAGATGGGCCATCGGAACGTGGATTTGGTCTTTGAGATC
TTGAAGAAGCGGTAG back to top Coding sequence (CDS) from alignment at chr29:125414..128728+
>NO29G00310.1 ID=NO29G00310.1|Name=NO29G00310.1|organism=Nannochloropsis oceanica|type=CDS|length=2031bp|location=Sequence derived from alignment at chr29:125414..128728+ (Nannochloropsis oceanica) ATGTCATCGATACCGTCCTTTCCTTTTGTCTCCTCGCTCCCAAACGTAAA TGTTGCTTCCGGGCTGAATGCTGGCGCTGCTGGGGGTAGCGGCGGCGATG GAGAAGGGGACGGAGGTGGGGATGCACTTGAGGAAATGGTAGCTCCTTCC TTGGGCAATTTATCACTTTCCTCCCCCGATGCTAGCGCTAATGTCGCTGC TGTGGGAGAAGAAGTGACAAATCGTGCCCGCGCAGCCAGCAGCGGCTGCA GTGGTGGCTGTCTCAACAGCAGCAGCAGCAGCAGCAAAAGCAGCGGAAGA AACAGCAGCAGCAGCAGCAGCAGCAGTGGCAAAAAGACGAGGCGTAAGCG TGATTTCGCGATGAAAACCCCGGCACTGGTCTCGCCGACTTTAGACGCAA CGTCGTTGGGGGAATGGGTCCGCCTTGATAGAGACTCCGACGACGAGGAC GAGGACGAGAAGCAGGAGGAGCAGGGGGAAGGTGTGCTGGAGGAGGAGGA CGAAGAAGGGCATGGAGAGGAGGCTGAAGAGGAGGAGGAAGAGGAGGAGG ATAGCGGGGAGGAAGGGGAGGCAGGTGTCAACAACCACCCCTCAGGAGCA GGCACAAGCCTTCCTCCTCCTCCTCATACTCATGCCATCGTTCCACGTCG CCCCCGTACCAACCGCCATCGTAATCGTAACCGTTATAAACCCTGTCAAC GTTCGCTGCACGTTGCCGCCGTGCTTGAGGACAAATTGATAGTCTTCGGG GGCTATCAAGGCACTGAGCGTGTCGCAGATTGTTACTTGTACGATTTTCT CCGACGGCGGTGGAGTGTAGTGGTGCCAGCGCCGGGAGGGCATCCCCCTC CCAGTCCTCGGGACAGGCATGTGGGTGTGGTGTACAAGCGAACTTTCTAT ATCTTCGGGGGCTTTGATGGCTCCCAGCGAGTGAATGACTTCATGGGCTT CAGCCTTGATACCCGGGAGTGGCGATCAGTGGTGTGTCTGATGGGCTCGG CGCCCACGCCACGGCACTCGCACACGGGTGTAGTTTACAAGGACAAATTC TACGTGCTTACCGGGTACGATGGGAGCTACCGGAATGATTTCCACGCGTT TTCCTTCCTGCAGTCCGCCTGGGCGCCAGTCCCGTGCGCCGGTAAAATCC CCAGGCCTCGGTACCGCGCGACATCATGTGTGAAGAACGACAATCTCATT TTATTTGGAGGCCACGACGGCACCAACCACTTGAATGATTCGGCCGTTAT CCACCACGAGAGCATGTACGTCTTCGGCGGGTCCACAGGCAGTGCCATGG ATGACCTCCACGAGCTTAACCTTGAGGAAAGGCGATGGCGGCCAATCATC CCTCCGTCCGGAAGTCTCCGCCCTGGCCAACGATTCTGCCACGTGGCGTG CGTGTGGAAGCACCAGATGCTGGTTTTTGGGGGCTACGACGGCTCTCAAC GCCTGAATGACTTTTGGGCCTTCAAGTTCGGTCCTGCCCTTCTGGCCTGC CAAATTCCCGAGCCCTCCCTCCTTCCCGACCTCCGCGGCTTCGTCAACAG CCAAGCACTCTCGGACGTTACCTTCATCGTGGAGGGCCAGCGGGTTTATG CTCACAAAATCCTCTGTGTCCGCTCTCCCTACTTCCGGGCATTGTTCACC GGCGGGATGAGGGAGGCCAGAGAGGGGGAAGTGGTGCTGCCAGACGTTCG CTACCCCATTTTTCTCTCCCTCCTCGAGTACCTCTACACGGACTCCCTGA CCATCGACCTGCCAACGTCCTTCCAGCTGTTTGAAGCTGCCGACCGTTTC GGAGTGGAACGGCTTAAAAAAATGTGCGAGCACAAGATGCTCACGTCCCT CTCGCTGGACAACGCGGCTATGATTCTATACACCGCCGATGTCTACCACG CCGCGGGCTTGCGGCAAAAGTGCTTGGGATTCATCCTCCAGAACTTCGAC GCCGTGAGCAAGACGGAGGGTTTTGTGGAGATGGGCCATCGGAACGTGGA TTTGGTCTTTGAGATCTTGAAGAAGCGGTAG back to top