NO28G01790.2, NO28G01790.2 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01790.2
Unique NameNO28G01790.2
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2065
Alignment locationchr28:571606..574128 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:571606..574128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
[Close]
BLAST of NO28G01790.2 vs.
Match: EWM22532.1 (hypothetical protein Naga_100290g2 [Nannochloropsis gaditana])

HSP 1 Score: 415.6 bits (1067), Expect = 1.700e-112
Identity = 194/302 (64.24%), Postives = 243/302 (80.46%), Query Frame = 0 
Query:   76 DSSVSVGPRVHSLNFLSPPMPASPPPAAETSSYYSNHYNRRCDAWRAIRLKTPKEISWQAKLEFALFKQEWRWIVVVLLAEYFNLVMHNFVYYLEGEIWGEAGPPPPLKDLGIMLFAGVFPPSAQWVVNLSLYLLVGMVLTLCLGRLLLNNVPWGGPQTMLVQEREDWEEVKTCSIPVPFVYLCKRACQVLSIALVLRVFSYMLTLEPNPAPYCHPPYWDPPNTVGEIMGRVEITGSCGDLLFSSHTLHSIVMLLTVLRHAPRLYIVCGISVCSMILVIMALLAFKNHYSHDIVTGEPASAL 378
            D+  S G RV +++ LSPP   SP  +  + SYYSNH NR  D+W+AIR K  KEI WQ +LE+AL KQEW+WI +  +AEYFNL+MHNFVY+LEG++WG +GPPPPL DLGIM FAG+FP S  W+V   LYLL+GMVL LCLGRLLLNNVPWG P+T+L  E+ + E ++TC IPVPFVY+CKRACQVL+I LVLRV S++ TLEPNPA YCHPP+WDPP+ + EI+GR+EI GSCGDLLFS+HTLH++ M+LTVLRHAP LY+V G++V SM++V++++LAFKNHYSHDIVT    S L
Sbjct:   63 DACKSAGRRVSAVSILSPPSGPSPRLSEVSRSYYSNHRNRAWDSWKAIRCKKWKEIEWQGRLEWALLKQEWKWIAMFFVAEYFNLIMHNFVYWLEGKMWGASGPPPPLTDLGIMAFAGIFPLSYSWLVGFFLYLLIGMVLVLCLGRLLLNNVPWGCPETVL--EKREGETLRTCCIPVPFVYICKRACQVLTIGLVLRVLSFVFTLEPNPADYCHPPFWDPPDALLEILGRIEIVGSCGDLLFSAHTLHAMAMMLTVLRHAPGLYLVTGLAVASMVMVVISMLAFKNHYSHDIVTAIYTSVL 362
The following BLAST results are available for this feature:
BLAST of NO28G01790.2 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM22532.11.700e-11264.24hypothetical protein Naga_100290g2 [Nannochloropsi... [more]
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01790NO28G01790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01790.2NO28G01790.2-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01790.2.cds1NO28G01790.2.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01790.2.cds2NO28G01790.2.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01790.2.cds3NO28G01790.2.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01790.2 ID=NO28G01790.2|Name=NO28G01790.2|organism=Nannochloropsis oceanica|type=mRNA|length=2065bp
AAAAAATTGAAAGATTCAATTCACCGTTGCCGCTGCTTGGTGGTTTCAAA
TCATCAAGCGCAGAGATTTTGATGGCACCTCAGCTTGTGTCGAGGGTCAG
ACCCTAGCATGGACCCTCATGTTGCAACGGCTGATGTCTCCTTGTTGTCT
TTGCCCTAGAGAAATCATCTTCGACCGCACGTACACATGCAACATGCATG
CATTTAACTTGTTGACGCGGAGGATACTCACTTGCCTTGGTGGGCATGCT
ACAACGGGGGGAAATTCCATTTCCCTTGTAAATTGCTGGATGATCATTAC
TGTCAAGGGGAGGGGGTAGCGAAAAGGGAGGGGCGCATTAGGTGGCGTAA
GGGGATGATTGGCTCAACATTCCTATTCTTTTCTCCCTCATGTTGTATCC
TCCCTCCTATCTTGTTCTAACTCAATGCCTCCCATCCACACCACGCACAC
GCACACAACTTTCAGTAGTTACTGCGGCCGGTATATGGGGAACAAGGATG
CTATCGCGAATGTCACACCCGATCCGGGGTCTACCAAGGAGACGTCGCAG
ATCATAGATGTCAACTCTCCTTCCTCCCCCGTGCGCCCCTCCTCCTCTGC
CCGCTTTCGAGGAGCTGGGGGAGGAACAGGCGTGAGAGGATTGGTGCGAG
ATTCGAGCGTGAGTGTTGGGCCTCGCGTACATTCCCTGAATTTCCTGTCT
CCTCCCATGCCTGCCAGTCCGCCGCCTGCTGCTGAGACCTCGAGCTACTA
CTCCAACCATTATAATCGCCGGTGTGATGCGTGGAGGGCCATTCGCTTGA
AGACTCCGAAGGAGATCTCCTGGCAGGCAAAGCTAGAATTTGCCTTGTTT
AAGCAGGAGTGGAGATGGATTGTGGTCGTCCTCCTGGCCGAATACTTCAA
TCTGGTGATGCACAATTTCGTCTACTACCTCGAGGGAGAGATATGGGGGG
AGGCAGGGCCCCCTCCGCCGTTGAAAGACTTGGGCATCATGCTCTTTGCG
GGCGTCTTCCCTCCCTCCGCCCAATGGGTCGTCAACCTCTCCCTCTACCT
GTTGGTCGGCATGGTCCTGACCCTCTGCCTCGGCCGGCTCCTCTTGAACA
ACGTCCCCTGGGGCGGGCCGCAAACGATGCTGGTCCAAGAGAGGGAGGAC
TGGGAGGAGGTCAAGACATGCTCGATCCCCGTACCATTCGTCTACCTCTG
CAAACGTGCCTGCCAGGTCCTGTCCATCGCCTTAGTGCTCCGCGTCTTCT
CCTACATGCTAACCCTAGAGCCCAATCCGGCGCCCTATTGCCACCCTCCG
TACTGGGACCCGCCCAATACCGTCGGGGAGATCATGGGCCGCGTGGAAAT
CACGGGGAGCTGCGGGGACCTCCTCTTCTCGAGCCACACGCTGCACAGCA
TAGTGATGCTGCTGACGGTCTTGCGCCACGCGCCCAGGTTGTACATCGTG
TGCGGGATCAGTGTCTGTTCCATGATACTGGTTATCATGGCCTTGCTGGC
CTTCAAGAACCACTATTCGCACGACATCGTCACAGGTGAGCCAGCCAGTG
CCCTCTCTTTTCCTGCACCACTTTTTCCCTCCCTCCTTCCTTTCTTCCGG
GTCTCTTATTCCGTGGTTGAGAGGGTTTAGTAGGCCTTCTTAATGACATA
ATTTACCAATTCTCAGGTACTTCTTCTTGATTGTCCTTTTCTTTCTCCCT
CCCTCCCATCCGATGTCTATCCCTATCCCCATCGTAGCCATCTACACTAC
CGTGCTGCTCTGGATGCTGATACCCGAGCCCACCGTGGCCGACTGCGATC
TGTTGCACATCGACCTACCCCCGGGGGAGCTGTGGGGAGGGGGTACATAA
GTACGATTATGTAGGAGGGGGCAGAGGGGGATGAAGGGGTGTAGTGGAAG
TGCTGTGCATGGCTCTTAGATTAATCGGCTTCTAAATGTTTTCCCCAATA
ATCATGTTATGGGTGAGAGTCCATCTCTACTGCTGACGGTCCTTCTTGCT
TGAATACAGTGATGATGAGATTAGAAAGACAAATTAAACCGAATTGTAGC
TTGAGTATGTGCAAT
back to top

protein sequence of NO28G01790.2

>NO28G01790.2-protein ID=NO28G01790.2-protein|Name=NO28G01790.2|organism=Nannochloropsis oceanica|type=polypeptide|length=402bp
MPPIHTTHTHTTFSSYCGRYMGNKDAIANVTPDPGSTKETSQIIDVNSPS
SPVRPSSSARFRGAGGGTGVRGLVRDSSVSVGPRVHSLNFLSPPMPASPP
PAAETSSYYSNHYNRRCDAWRAIRLKTPKEISWQAKLEFALFKQEWRWIV
VVLLAEYFNLVMHNFVYYLEGEIWGEAGPPPPLKDLGIMLFAGVFPPSAQ
WVVNLSLYLLVGMVLTLCLGRLLLNNVPWGGPQTMLVQEREDWEEVKTCS
IPVPFVYLCKRACQVLSIALVLRVFSYMLTLEPNPAPYCHPPYWDPPNTV
GEIMGRVEITGSCGDLLFSSHTLHSIVMLLTVLRHAPRLYIVCGISVCSM
ILVIMALLAFKNHYSHDIVTGEPASALSFPAPLFPSLLPFFRVSYSVVER
V*
back to top

mRNA from alignment at chr28:571606..574128+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01790.2 ID=NO28G01790.2|Name=NO28G01790.2|organism=Nannochloropsis oceanica|type=mRNA|length=2523bp|location=Sequence derived from alignment at chr28:571606..574128+ (Nannochloropsis oceanica)
AAAAAATTGAAAGATTCAATTCACCGTTGCCGCTGCTTGGTGGTTTCAAA
TCATCAAGCGCAGAGATTTTGATGGCACCTCAGCTTGTGTCGAGGGTCAG
ACCCTAGCATGGACCCTCATGTTGCAACGGCTGATGTCTCCTTGTTGTCT
TTGCCCTAGAGAAATCATCTTCGACCGCACGTACACATGCAACATGCATG
CATTTAACTTGTTGACGCGGAGGATACTCACTTGCCTTGGTGGGCATGCT
ACAACGGGGGGAAATTCCATTTCCCTTGTAAATTGCTGGATGATCATTAC
TGTCAAGGGGAGGGGGTAGCGAAAAGGGAGGGGCGCATTAGGTGGCGTAA
GGGGATGATTGGCTCAACATTCCTATTCTTTTCTCCCTCATGTTGTATCC
TCCCTCCTATCTTGTTCTAACTCAATGCCTCCCATCCACACCACGCACAC
GCACACAACTTTCAGTAGTTACTGCGGCCGGTATATGGGGAACAAGGATG
CTATCGCGAATGTCACACCCGATCCGGGGTCTACCAAGGAGACGTCGCAG
ATCATAGATGTCAACTCTCCTTCCTCCCCCGTGCGCCCCTCCTCCTCTGC
CCGCTTTCGAGGAGCTGGGGGAGGAACAGGCGTGAGAGGATTGGTGCGAG
ATTCGAGCGTGAGTGTTGGGCCTCGCGTACATTCCCTGAATTTCCTGTCT
CCTCCCATGCCTGCCAGTCCGCCGCCTGCTGCTGAGACCTCGAGCTACTA
CTCCAACCATTATAATCGCCGGTGTGATGCGTGGAGGGCCATTCGCTTGA
AGACTCCGAAGGAGGTAAATCAAATGAAAGATGGGAGGGGAAGGAAGGCA
GAAGGAAAGGAGCGAAGGACGGTGAAGGATTATTCCGATTTCCTGAATAC
TTCGATTGAACGCTGGACATGGTCGACGACTTGAGGAAAGATAGGAGGAG
GGGAGTGGAGATGGGTACGGAGGAAAGGAGGAAGAAGTCAGGATCTCACA
CATCTTCCATTCTTTACGTTTCCATATACAAATCAAACGTTATTGTTTGG
TAGATCTCCTGGCAGGCAAAGCTAGAATTTGCCTTGTTTAAGCAGGAGTG
GAGATGGATTGTGGTACGTCTGGCTGGCCGGCTTGTGTCCGCGGAGTAGA
GGGCATAACTCTCTCCCTCTCTCCCTTCCTTCAGAACGATGCTTCCAAGC
ATATCACCACAAACAGAATAACTTCATTCTTAAATTGAGGCGGCGTAAGA
CACTCCCGCCCTTTTTTTAAATCCGTCAAATCTTCCCCTCCCGCCCGCCC
TTCCCTCCTCCCTGCATCTCCGCTCCCTGCAGGTCGTCCTCCTGGCCGAA
TACTTCAATCTGGTGATGCACAATTTCGTCTACTACCTCGAGGGAGAGAT
ATGGGGGGAGGCAGGGCCCCCTCCGCCGTTGAAAGACTTGGGCATCATGC
TCTTTGCGGGCGTCTTCCCTCCCTCCGCCCAATGGGTCGTCAACCTCTCC
CTCTACCTGTTGGTCGGCATGGTCCTGACCCTCTGCCTCGGCCGGCTCCT
CTTGAACAACGTCCCCTGGGGCGGGCCGCAAACGATGCTGGTCCAAGAGA
GGGAGGACTGGGAGGAGGTCAAGACATGCTCGATCCCCGTACCATTCGTC
TACCTCTGCAAACGTGCCTGCCAGGTCCTGTCCATCGCCTTAGTGCTCCG
CGTCTTCTCCTACATGCTAACCCTAGAGCCCAATCCGGCGCCCTATTGCC
ACCCTCCGTACTGGGACCCGCCCAATACCGTCGGGGAGATCATGGGCCGC
GTGGAAATCACGGGGAGCTGCGGGGACCTCCTCTTCTCGAGCCACACGCT
GCACAGCATAGTGATGCTGCTGACGGTCTTGCGCCACGCGCCCAGGTTGT
ACATCGTGTGCGGGATCAGTGTCTGTTCCATGATACTGGTTATCATGGCC
TTGCTGGCCTTCAAGAACCACTATTCGCACGACATCGTCACAGGTGAGCC
AGCCAGTGCCCTCTCTTTTCCTGCACCACTTTTTCCCTCCCTCCTTCCTT
TCTTCCGGGTCTCTTATTCCGTGGTTGAGAGGGTTTAGTAGGCCTTCTTA
ATGACATAATTTACCAATTCTCAGGTACTTCTTCTTGATTGTCCTTTTCT
TTCTCCCTCCCTCCCATCCGATGTCTATCCCTATCCCCATCGTAGCCATC
TACACTACCGTGCTGCTCTGGATGCTGATACCCGAGCCCACCGTGGCCGA
CTGCGATCTGTTGCACATCGACCTACCCCCGGGGGAGCTGTGGGGAGGGG
GTACATAAGTACGATTATGTAGGAGGGGGCAGAGGGGGATGAAGGGGTGT
AGTGGAAGTGCTGTGCATGGCTCTTAGATTAATCGGCTTCTAAATGTTTT
CCCCAATAATCATGTTATGGGTGAGAGTCCATCTCTACTGCTGACGGTCC
TTCTTGCTTGAATACAGTGATGATGAGATTAGAAAGACAAATTAAACCGA
ATTGTAGCTTGAGTATGTGCAAT
back to top

Coding sequence (CDS) from alignment at chr28:571606..574128+

>NO28G01790.2 ID=NO28G01790.2|Name=NO28G01790.2|organism=Nannochloropsis oceanica|type=CDS|length=1206bp|location=Sequence derived from alignment at chr28:571606..574128+ (Nannochloropsis oceanica)
ATGCCTCCCATCCACACCACGCACACGCACACAACTTTCAGTAGTTACTG
CGGCCGGTATATGGGGAACAAGGATGCTATCGCGAATGTCACACCCGATC
CGGGGTCTACCAAGGAGACGTCGCAGATCATAGATGTCAACTCTCCTTCC
TCCCCCGTGCGCCCCTCCTCCTCTGCCCGCTTTCGAGGAGCTGGGGGAGG
AACAGGCGTGAGAGGATTGGTGCGAGATTCGAGCGTGAGTGTTGGGCCTC
GCGTACATTCCCTGAATTTCCTGTCTCCTCCCATGCCTGCCAGTCCGCCG
CCTGCTGCTGAGACCTCGAGCTACTACTCCAACCATTATAATCGCCGGTG
TGATGCGTGGAGGGCCATTCGCTTGAAGACTCCGAAGGAGATCTCCTGGC
AGGCAAAGCTAGAATTTGCCTTGTTTAAGCAGGAGTGGAGATGGATTGTG
GTCGTCCTCCTGGCCGAATACTTCAATCTGGTGATGCACAATTTCGTCTA
CTACCTCGAGGGAGAGATATGGGGGGAGGCAGGGCCCCCTCCGCCGTTGA
AAGACTTGGGCATCATGCTCTTTGCGGGCGTCTTCCCTCCCTCCGCCCAA
TGGGTCGTCAACCTCTCCCTCTACCTGTTGGTCGGCATGGTCCTGACCCT
CTGCCTCGGCCGGCTCCTCTTGAACAACGTCCCCTGGGGCGGGCCGCAAA
CGATGCTGGTCCAAGAGAGGGAGGACTGGGAGGAGGTCAAGACATGCTCG
ATCCCCGTACCATTCGTCTACCTCTGCAAACGTGCCTGCCAGGTCCTGTC
CATCGCCTTAGTGCTCCGCGTCTTCTCCTACATGCTAACCCTAGAGCCCA
ATCCGGCGCCCTATTGCCACCCTCCGTACTGGGACCCGCCCAATACCGTC
GGGGAGATCATGGGCCGCGTGGAAATCACGGGGAGCTGCGGGGACCTCCT
CTTCTCGAGCCACACGCTGCACAGCATAGTGATGCTGCTGACGGTCTTGC
GCCACGCGCCCAGGTTGTACATCGTGTGCGGGATCAGTGTCTGTTCCATG
ATACTGGTTATCATGGCCTTGCTGGCCTTCAAGAACCACTATTCGCACGA
CATCGTCACAGGTGAGCCAGCCAGTGCCCTCTCTTTTCCTGCACCACTTT
TTCCCTCCCTCCTTCCTTTCTTCCGGGTCTCTTATTCCGTGGTTGAGAGG
GTTTAG
back to top
Synonyms
Publications