NO28G01750.1, NO28G01750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO28G01750.1
Unique NameNO28G01750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1764
Alignment locationchr28:547289..550006 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr28genomechr28:547289..550006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO28G01750.1 vs.
Match: GAX74875.1 (hypothetical protein CEUSTIGMA_g2321.t1 [Chlamydomonas eustigma])

HSP 1 Score: 256.1 bits (653), Expect = 2.300e-64
Identity = 159/438 (36.30%), Postives = 232/438 (52.97%), Query Frame = 0 
Query:   91 EDKREILACWYEETCSALGLKGRVRVAWDGVNATLGGSMHALQQHILAVRAHPLLALPPSHDGGAREGGREGGKAEIDMKLALNEGG-ARNEQCRRETGFDRLRVTRCQEVVSLGPRAAAASSSFP-PSPHFSPLQFHQCLAQASRGGRERGRE-----GGREDMVLLDARNLYESRVGYFEAPGVPCLRPSIRQFSDLPAWLEEEEGREGGREDGHGSSSAFSSLKNKDTKILMYCTGGVRCERASAFLQARG--YRKVVQLQGGIQRYLEAFPDGGFFQGKNFVFDERVTVAPA----------GGQEGGWEGGRVCAGMLPPGLM----PSGGGH----ENPPSL---------------------------PPPCPPSFLSPPFPRK-DVVGRCLGCARPWDDYGSRHRCLQCRMLLLICKGC-EEEGREGGRE 473
            +D+++ + C++ + C  L LKGR+RVA DG+N T+GG    +++H+ AVR+HPLL                     ID KLALN    + ++    ETGF+ L V  C+E+V++GP A   ++     + H  P +FH  L   +  G+E GR+        ++ V++D RN+YE+++G+F   G+P L P  R FSDLPAWL+++E +  G+                  +I+MYCTGGVRCERASA+L+ +G  ++ V QL+GGIQRYLEA+ + GFF+GKNFV+D+R+ V P+          G Q+   EG R    +LP  +M    P  G       NP +L                              CPPS      P   +VVGRC  C  PWDDYG R RC  CR+L+L+C  C  E+ ++ GR+
Sbjct:   31 DDEQQEMGCFFSDNCKYLDLKGRIRVAEDGINVTVGGLEDNIKRHVEAVRSHPLLR-----------------GCNIDFKLALNPAATSASDAASAETGFNTLSVRICKELVTMGPLAQGRANPLENAATHLKPAEFHGMLTSVTTHGKELGRDFQEGVDAHKETVIIDVRNMYETQIGHFHVEGIPLLDPRTRCFSDLPAWLDKQEEKLRGK------------------RIMMYCTGGVRCERASAYLKEKGAGFQDVYQLEGGIQRYLEAYGERGFFKGKNFVYDDRIAVGPSNTASSVPEHVGHQDLPVEGRRA---VLPEQVMKRPVPFSGSQTDDCRNPDALNAVHGQDLVNPQEVLGKDSHHIAIPHDTASCPPSSSCCMQPAAVEVVGRCALCENPWDDYGLRARCCCCRLLMLVCDQCGYEQQQQQGRK 430
The following BLAST results are available for this feature:
BLAST of NO28G01750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
GAX74875.12.300e-6436.30hypothetical protein CEUSTIGMA_g2321.t1 [Chlamydom... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO28G01750NO28G01750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO28G01750.1NO28G01750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO28G01750.1.cds1NO28G01750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01750.1.cds2NO28G01750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01750.1.cds3NO28G01750.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01750.1.cds4NO28G01750.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01750.1.cds5NO28G01750.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO28G01750.1.cds6NO28G01750.1.cds6Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO28G01750.1 ID=NO28G01750.1|Name=NO28G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=1764bp
ATGGAGCCAACCTCGGAGGAAGAAAAAATAGACATTCGCCCCGCCATCCT
GCTCTACTATGCCTACCTCCCCCTCTCCTCCTCCTCCTCCCCTTCCTCCT
CCTCCTGCTCCTCTTTATTCTCCTCCTCTTCCTGCTCCTCCAATCCTCCT
TCCTCCTCTACCACCACATTCACGATAGCGGAGAAGAAAAATCAGCCCCC
TATGTCGCTCTCTCCTTCCCACCAGCGGAAAGAGGAGAGGGGGAGGAAGG
GAAGGAAGGAGGGTGAAGAGGAGGACAAGCGGGAAATCCTGGCCTGCTGG
TACGAAGAGACATGCAGCGCCTTGGGCCTGAAGGGCCGCGTCCGAGTGGC
TTGGGATGGAGTGAACGCTACGCTAGGCGGAAGCATGCACGCACTCCAGC
AGCACATCCTTGCTGTCCGTGCCCACCCCTTACTCGCTCTCCCTCCCTCC
CATGATGGAGGCGCGAGGGAGGGAGGAAGGGAGGGAGGGAAGGCGGAGAT
CGACATGAAGCTGGCTCTGAATGAGGGAGGGGCACGGAACGAACAATGTC
GAAGAGAGACGGGTTTCGACAGGCTGAGGGTGACTAGGTGCCAGGAGGTG
GTCTCTCTAGGCCCACGCGCGGCCGCCGCCTCTTCCTCCTTCCCTCCCTC
CCCCCACTTCTCCCCCCTCCAGTTCCACCAATGCCTTGCCCAGGCCAGCA
GAGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGACATGGTCCTT
TTGGACGCGCGGAATTTGTATGAGAGTCGTGTCGGCTACTTCGAGGCTCC
CGGCGTCCCCTGTCTCCGTCCGTCCATCCGACAGTTCTCCGACCTCCCCG
CTTGGCTCGAAGAGGAGGAAGGGAGGGAAGGGGGGAGGGAGGACGGGCAC
GGGTCCTCCTCGGCTTTTTCCTCGCTCAAGAATAAGGACACAAAGATCCT
CATGTACTGCACGGGCGGCGTGCGGTGTGAGCGAGCCAGCGCCTTCCTCC
AAGCCAGGGGCTACAGGAAGGTGGTGCAGCTGCAGGGCGGCATACAGCGC
TACCTTGAGGCCTTCCCCGACGGTGGCTTCTTCCAGGGCAAGAATTTTGT
CTTTGATGAGAGAGTCACCGTGGCGCCCGCCGGAGGGCAGGAGGGGGGGT
GGGAGGGAGGGCGGGTGTGTGCAGGAATGCTGCCGCCGGGATTAATGCCG
AGTGGGGGAGGACATGAAAATCCTCCCTCCCTCCCTCCCCCTTGCCCCCC
TTCATTCCTCTCTCCCCCCTTCCCTCGCAAGGACGTGGTGGGAAGGTGCT
TGGGATGTGCTCGGCCGTGGGATGACTATGGGAGCCGACACCGTTGTCTT
CAGTGTCGTATGCTGCTCTTGATTTGCAAAGGGTGTGAGGAGGAGGGGAG
GGAGGGAGGAAGGGAAGGGGGGTGGTGTTGCGAGCAGTGCGTGGAGAGGG
GAGGGCAGGTAGAGGCAGAGGAGTCAGAGGGACAGACGAAGGGGGGAGGG
AGGTGTCGGAGGAGAAGAAGGGCAGGGAAGGGAGGGAAGACATGCGCAGG
AATCAGGTCTCCAAGTCCGATTATGGAACCGGCGATGGGTGAGGAGGAAT
GAGGCGTTCTCTTGTCCTGATTTCACCGGCAAGAGGAGAGGTGGGCGTTC
CGAAAGCAACAAACCAGATGCATGCATAGATGTCATCTCATTGAGTACCC
TTAACTGTGAGCAAAATACAGAAACAACATCAATAAAGAAGAAGAACAGC
AATAACAAGAACAA
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protein sequence of NO28G01750.1

>NO28G01750.1-protein ID=NO28G01750.1-protein|Name=NO28G01750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=534bp
MEPTSEEEKIDIRPAILLYYAYLPLSSSSSPSSSSCSSLFSSSSCSSNPP
SSSTTTFTIAEKKNQPPMSLSPSHQRKEERGRKGRKEGEEEDKREILACW
YEETCSALGLKGRVRVAWDGVNATLGGSMHALQQHILAVRAHPLLALPPS
HDGGAREGGREGGKAEIDMKLALNEGGARNEQCRRETGFDRLRVTRCQEV
VSLGPRAAAASSSFPPSPHFSPLQFHQCLAQASRGGRERGREGGREDMVL
LDARNLYESRVGYFEAPGVPCLRPSIRQFSDLPAWLEEEEGREGGREDGH
GSSSAFSSLKNKDTKILMYCTGGVRCERASAFLQARGYRKVVQLQGGIQR
YLEAFPDGGFFQGKNFVFDERVTVAPAGGQEGGWEGGRVCAGMLPPGLMP
SGGGHENPPSLPPPCPPSFLSPPFPRKDVVGRCLGCARPWDDYGSRHRCL
QCRMLLLICKGCEEEGREGGREGGWCCEQCVERGGQVEAEESEGQTKGGG
RCRRRRRAGKGGKTCAGIRSPSPIMEPAMGEEE*
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mRNA from alignment at chr28:547289..550006-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO28G01750.1 ID=NO28G01750.1|Name=NO28G01750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2718bp|location=Sequence derived from alignment at chr28:547289..550006- (Nannochloropsis oceanica)
ATGGAGCCAACCTCGGAGGAAGAAAAAATAGACATTCGCCCCGCCATCCT
GCTCTACTATGCCTACCTCCCCCTCTCCTCCTCCTCCTCCCCTTCCTCCT
CCTCCTGCTCCTCTTTATTCTCCTCCTCTTCCTGCTCCTCCAATCCTCCT
TCCTCCTCTACCACCACATTCACGATAGCGGAGAAGAAAAATCAGCCCCC
TATGTCGCTCTCTCCTTCCCACCAGCGGAAAGAGGAGAGGGGGAGGAAGG
GAAGGAAGGAGGGTGAAGAGGAGGACAAGCGGGAAATCCTGGCCTGCTGG
TACGAAGAGACATGCAGCGCCTTGGGCCTGAAGGGCCGCGTCCGAGTGGC
TTGGGATGGAGTGAACGCTACGCTAGGTGAGGCACGGAGGGTAGGTGGGA
GGGAGGGAGGGAAGGAGGGAGTAGGGGAGGGAGTGGCTAGGGTGGTTGAG
CGGGGAGAGACGATTCGAATGATGCCTAGGGGAGGGAGGGAGGGAGGGAT
AGAAGGAGGACGGATGGGCGGGAACGAAGGGTGTGGCATGGAGTGAGTGG
TATGCCGGGTGTGGAGGGACGGAGGGAAGGAAGGAAGGAGGGAAGGAGGG
AGGGATGGAAGGCTCGATAAGAAGGGAGCGAATGGGCGACCTTCCTCTCT
CTTCTCACCCTCCCTCCCTCCCTCCCACCTTCCCTCCCTCCCCAGGCGGA
AGCATGCACGCACTCCAGCAGCACATCCTTGCTGTCCGTGCCCACCCCTT
ACTCGCTCTCCCTCCCTCCCATGATGGAGGCGCGAGGGAGGGAGGAAGGG
AGGGAGGGAAGGCGGAGATCGACATGAAGCTGGCTCTGAATGAGGGAGGG
GCACGGAACGAACAATGTCGAAGAGAGACGGGTTTCGACAGGCTGAGGGT
GACTAGGTGCCAGGAGGTGAGAGACGAGGGAGGGAGGGAGGGAGGGAGGG
AGAGAGGAAGATGTGGCAGAGAACCTGGCCGTGCTTACTTTTTGGGAGAG
AGAGACTACAATCTCACAATCTCCTCTCTCTCCTTCCTTTCCTCCCTCGC
TCCCTCCCTCCCTCCCCCCTTCTCTCCCTTATTCTCTCTCTCCCTCCCTC
CCTCCCTGGCTTCCTCCCTCCTTCCCTCCCTCCCTCCCTCCTTCCCTTCC
CTTCCCTTTCCAGGTGGTCTCTCTAGGCCCACGCGCGGCCGCCGCCTCTT
CCTCCTTCCCTCCCTCCCCCCACTTCTCCCCCCTCCAGTTCCACCAATGC
CTTGCCCAGGCCAGCAGAGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAG
GGAGGACATGGTCCTTTTGGACGCGCGGAATTTGTATGAGAGTCGTGTCG
GGTGAGTTCGGCCCTGGAGGCTCCCTCACTCCCTCCCTCCCTCCCTCCTG
CCACCTTCCACTCTGCGCTCCATTTCTTTCTTTCCCCCCGTCCTCCCTCC
CTTCTTCCCTCCCTCCCTCCCTCCCTTCCTCTCTCCCTCCCCAGCTACTT
CGAGGCTCCCGGCGTCCCCTGTCTCCGTCCGTCCATCCGACAGTTCTCCG
ACCTCCCCGCTTGGCTCGAAGAGGAGGAAGGGAGGGAAGGGGGGAGGGAG
GACGGGCACGGGTCCTCCTCGGCTTTTTCCTCGCTCAAGAATAAGGACAC
AAAGGTGTGTGATGTTTTGCTCCCTCCCTTCCTCCCTCCCTCCCTTCCCC
GTCTACGAATCAACATCGACCACCCCTTCCCTCCCTCTTTCCCTCAGATC
CTCATGTACTGCACGGGCGGCGTGCGGTGTGAGCGAGCCAGCGCCTTCCT
CCAAGCCAGGGGCTACAGGAAGGTGGTGCAGCTGCAGGGTGAGGGCGGGC
TGGAGGGAGGGAGGGCGGGAGGGTTGGGGAAGTCTCATCCTTGAAAAACG
CCTAGAGAAATGACCGCGCATAACCTATACCTGCCTCGTTCCCTCCCTCC
TTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCGGTCCTTAGGCGGCATACA
GCGCTACCTTGAGGCCTTCCCCGACGGTGGCTTCTTCCAGGGCAAGAATT
TTGTCTTTGATGAGAGAGTCACCGTGGCGCCCGCCGGAGGGCAGGAGGGG
GGGTGGGAGGGAGGGCGGGTGTGTGCAGGAATGCTGCCGCCGGGATTAAT
GCCGAGTGGGGGAGGACATGAAAATCCTCCCTCCCTCCCTCCCCCTTGCC
CCCCTTCATTCCTCTCTCCCCCCTTCCCTCGCAAGGACGTGGTGGGAAGG
TGCTTGGGATGTGCTCGGCCGTGGGATGACTATGGGAGCCGACACCGTTG
TCTTCAGTGTCGTATGCTGCTCTTGATTTGCAAAGGGTGTGAGGAGGAGG
GGAGGGAGGGAGGAAGGGAAGGGGGGTGGTGTTGCGAGCAGTGCGTGGAG
AGGGGAGGGCAGGTAGAGGCAGAGGAGTCAGAGGGACAGACGAAGGGGGG
AGGGAGGTGTCGGAGGAGAAGAAGGGCAGGGAAGGGAGGGAAGACATGCG
CAGGAATCAGGTCTCCAAGTCCGATTATGGAACCGGCGATGGGTGAGGAG
GAATGAGGCGTTCTCTTGTCCTGATTTCACCGGCAAGAGGAGAGGTGGGC
GTTCCGAAAGCAACAAACCAGATGCATGCATAGATGTCATCTCATTGAGT
ACCCTTAACTGTGAGCAAAATACAGAAACAACATCAATAAAGAAGAAGAA
CAGCAATAACAAGAACAA
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Coding sequence (CDS) from alignment at chr28:547289..550006-

>NO28G01750.1 ID=NO28G01750.1|Name=NO28G01750.1|organism=Nannochloropsis oceanica|type=CDS|length=1602bp|location=Sequence derived from alignment at chr28:547289..550006- (Nannochloropsis oceanica)
ATGGAGCCAACCTCGGAGGAAGAAAAAATAGACATTCGCCCCGCCATCCT
GCTCTACTATGCCTACCTCCCCCTCTCCTCCTCCTCCTCCCCTTCCTCCT
CCTCCTGCTCCTCTTTATTCTCCTCCTCTTCCTGCTCCTCCAATCCTCCT
TCCTCCTCTACCACCACATTCACGATAGCGGAGAAGAAAAATCAGCCCCC
TATGTCGCTCTCTCCTTCCCACCAGCGGAAAGAGGAGAGGGGGAGGAAGG
GAAGGAAGGAGGGTGAAGAGGAGGACAAGCGGGAAATCCTGGCCTGCTGG
TACGAAGAGACATGCAGCGCCTTGGGCCTGAAGGGCCGCGTCCGAGTGGC
TTGGGATGGAGTGAACGCTACGCTAGGCGGAAGCATGCACGCACTCCAGC
AGCACATCCTTGCTGTCCGTGCCCACCCCTTACTCGCTCTCCCTCCCTCC
CATGATGGAGGCGCGAGGGAGGGAGGAAGGGAGGGAGGGAAGGCGGAGAT
CGACATGAAGCTGGCTCTGAATGAGGGAGGGGCACGGAACGAACAATGTC
GAAGAGAGACGGGTTTCGACAGGCTGAGGGTGACTAGGTGCCAGGAGGTG
GTCTCTCTAGGCCCACGCGCGGCCGCCGCCTCTTCCTCCTTCCCTCCCTC
CCCCCACTTCTCCCCCCTCCAGTTCCACCAATGCCTTGCCCAGGCCAGCA
GAGGAGGGAGGGAGAGAGGGAGGGAGGGAGGGAGGGAGGACATGGTCCTT
TTGGACGCGCGGAATTTGTATGAGAGTCGTGTCGGCTACTTCGAGGCTCC
CGGCGTCCCCTGTCTCCGTCCGTCCATCCGACAGTTCTCCGACCTCCCCG
CTTGGCTCGAAGAGGAGGAAGGGAGGGAAGGGGGGAGGGAGGACGGGCAC
GGGTCCTCCTCGGCTTTTTCCTCGCTCAAGAATAAGGACACAAAGATCCT
CATGTACTGCACGGGCGGCGTGCGGTGTGAGCGAGCCAGCGCCTTCCTCC
AAGCCAGGGGCTACAGGAAGGTGGTGCAGCTGCAGGGCGGCATACAGCGC
TACCTTGAGGCCTTCCCCGACGGTGGCTTCTTCCAGGGCAAGAATTTTGT
CTTTGATGAGAGAGTCACCGTGGCGCCCGCCGGAGGGCAGGAGGGGGGGT
GGGAGGGAGGGCGGGTGTGTGCAGGAATGCTGCCGCCGGGATTAATGCCG
AGTGGGGGAGGACATGAAAATCCTCCCTCCCTCCCTCCCCCTTGCCCCCC
TTCATTCCTCTCTCCCCCCTTCCCTCGCAAGGACGTGGTGGGAAGGTGCT
TGGGATGTGCTCGGCCGTGGGATGACTATGGGAGCCGACACCGTTGTCTT
CAGTGTCGTATGCTGCTCTTGATTTGCAAAGGGTGTGAGGAGGAGGGGAG
GGAGGGAGGAAGGGAAGGGGGGTGGTGTTGCGAGCAGTGCGTGGAGAGGG
GAGGGCAGGTAGAGGCAGAGGAGTCAGAGGGACAGACGAAGGGGGGAGGG
AGGTGTCGGAGGAGAAGAAGGGCAGGGAAGGGAGGGAAGACATGCGCAGG
AATCAGGTCTCCAAGTCCGATTATGGAACCGGCGATGGGTGAGGAGGAAT
GA
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Synonyms
Publications