NO28G01540.1, NO28G01540.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01540.1
Unique Name	NO28G01540.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	3071
Alignment location	chr28:492216..496034 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:492216..496034 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO28G01540.1 vs.
Match: EWM20361.1 (1-acyl-sn-glycerol-3-phosphate acyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 365.5 bits (937), Expect = 1.700e-97
Identity = 165/214 (77.10%), Postives = 191/214 (89.25%), Query Frame = 0

Query:    9 GPVIPAGQGGRLLRLVVSLWGYSSMLISFVVAWWLMVLALIFICPFLPSEKDRTLFLGWIFRYISSYVIHLNPFWHLQMVGPRPSSPPTKTLVMCNHLSNADAFFLSSALLPWETKYIAKADLFQVPFGGWAMGLAGDLAIHFTRDHTGWGVKKGTVGKMMEQCKSYLSDSIPIAVFPEGGRTENGRLRPFKDGFFQLALDTNADILPCALSGT 223
            GPVIPAGQGG  LR+VVS+WGY+SM+ISF+ +W L +LA IFICPFLPS K+R L LGWIFR +SS VI LNP+WHL+++GPRP+ PP+KTL+MCNHLSNADAFFLSSALLPWETKYIAKA LFQVPFGGWAMGLAGDL +HFTRD  GWGV KGTVGK+MEQCK Y+S+ +P+ VFPEGGR+ENG LRPFKDGFFQLAL+T A+ILPCALSG+
Sbjct:    7 GPVIPAGQGGLALRVVVSIWGYTSMVISFIFSWMLQILACIFICPFLPSCKERLLLLGWIFRSVSSLVIRLNPYWHLRVLGPRPTRPPSKTLIMCNHLSNADAFFLSSALLPWETKYIAKASLFQVPFGGWAMGLAGDLPVHFTRDCHGWGVVKGTVGKLMEQCKVYISEGMPLTVFPEGGRSENGHLRPFKDGFFQLALETQAEILPCALSGS 220

The following BLAST results are available for this feature:

BLAST of NO28G01540.1 vs.

BLAST of NO28G01540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20361.1	1.700e-97	77.10	1-acyl-sn-glycerol-3-phosphate acyltransferase [Na...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G01540	NO28G01540	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01540.1	NO28G01540.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01540.1.cds1	NO28G01540.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01540.1.cds2	NO28G01540.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01540.1.cds3	NO28G01540.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01540.1.cds4	NO28G01540.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01540.1.cds5	NO28G01540.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:492216..496034+
coding sequence from alignment at chr28:492216..496034+

mRNA sequence

>NO28G01540.1 ID=NO28G01540.1|Name=NO28G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3071bp
CTGCTTGCCCTCTCCCGCCAAAGATATGATATCTCTTGATGGCATTTATT
CTGAAAATAGCCACTTAAATTACCGACTAGTGTGTGCTAATTGGGCTTAC
ATGACCACGAGGATGCAGCAATGTGATGGTTGGCCATATCTGCGGAATCT
TCCAAACACTCATTCGCCCAAAAACCGGTACTGCACTGAAGTCGATTGAC
GAGGTATGCTGTTCTTGTTCCTCAATAAGACCTGCTGCCCATTCCCTGGT
AGATCAAATGGCTTAATGGCGGGGCGACCGTAAACAATATCATCATGCCA
TAGTAAAGTACAGTCTAGCCCCCCAATCCCCTAGAATGAGGCAAGGGCTA
CCACATGGTTTATACCCAAGAATGAAACTGAAAATGGCTACTCATATCCA
ACTTGAGCATGAGCATGTCCCTGGCTTATCCCGCTTCCTCCCCACCCCCT
TTAAAATTCCGCACAGCAATAGAGGGGTCCTTAGCTTATTACACCAGTCA
GTATCTGGGAACCTTACTGTTGGCTTTGGCGTGGACGCAGGGGCTTGATT
GCCTGCCCTATGATAATTGGCGGTTTGCGCGTCGCTCGGTCGAAAAGCGC
GTTCCTTTTATAATTGTTTGTGGCAAGACACCCGTTTTGCTGAAGTCTAC
GCGGATTAGACAAGAGGAAGAATGAGTAAGACACACTTCAAGAATGGCCC
GGTCATTCCCGCGGGGCAAGGTGGGCGGCTGCTGCGCCTGGTTGTCTCGT
TATGGGGATACTCATCAATGCTAATTAGCTTTGTCGTGGCCTGGTGGCTT
ATGGTCCTCGCCCTCATCTTCATCTGCCCCTTCCTACCTTCCGAAAAAGA
CCGCACCCTTTTCCTGGGATGGATTTTCCGGTACATCTCCTCGTACGTCA
TCCACCTGAATCCATTTTGGCACCTTCAAATGGTGGGGCCGCGTCCTTCC
TCCCCTCCTACAAAGACATTGGTCATGTGCAACCACCTCTCCAACGCCGA
CGCATTCTTTCTGAGCTCGGCCCTCTTGCCATGGGAGACAAAGTACATCG
CAAAGGCAGATTTGTTCCAGGTGCCCTTTGGGGGCTGGGCCATGGGCCTG
GCCGGCGACCTGGCTATTCACTTCACTCGGGACCATACGGGTTGGGGTGT
GAAGAAAGGAACGGTTGGCAAGATGATGGAACAATGCAAGAGCTATTTGT
CCGACAGCATTCCAATCGCCGTCTTTCCGGAGGGAGGGAGGACAGAAAAC
GGCCGCCTCCGCCCGTTTAAGGACGGTTTCTTCCAACTGGCGCTCGACAC
GAACGCGGACATCCTGCCTTGCGCACTATCAGGCACCGAGCAGGCGTGGC
CCATATACGAATCGCTCATGGGGCCCGCCACAGTGTATGTGCGGATCGGT
AGCCCCATCCCGTCTTCCTCCCATACCGTGCAAAGCCTCAAGGCAGAAGT
GGTGCGTCAAATGGAGAAGCTGCAACGGGATTTGCCGTTACCTTTAACGG
TCCCTCGAATCGCAACCGTCGTCGCAGAGGAGGGAGGAAGGGAGGGAGGG
AGGGAAAGAGAGATAGTGCCCAATGGCGGAGGAGGAGGTGATGGAGGAAG
AGGAAGACGCGAAGAGCTTGACAGAGCCCAGCCCTCCCCTCAGTAGACAC
AGGAAAGAGAGACCGGCAAAGGGAAAAAGGACAAGAGGGAGGCAGGAGAG
AAAGGAGATAGCTGAAGGGGAATGGACGGCCTTCACCCCAGTAGAAGGCG
ATAATGTACATGTGTAGAAAGAAGGGCAGTTCAAGGGAAGATGATGACAA
CGTTTGAAAGTGAGAGCGTAACGGCCAAGATATTTTTTTAAAAATCCCGC
GGACATGGAAGAGAGATACGCGCCGGTCTACAACATACAGATGAGCAGGA
AAAGGCGAGAACACAGTATACAGAGATGGTTGGCAGATACACGTGTTTGG
AGTTTGTACTGCACATGAATGACTTACATTGAGACTGATACTACTGCTGC
TGCCGAAGGGAGTGACGGAGGGAGGCAGGGAGGGAGGGACTGTTGTACTG
AGGCGAATCAAATGCTTGGACAAACAATGCAAATTATTAAGAGCGCGACA
GGAGATCGATAGAAGAAGCGATAGGCAAGCTCAGGGAATTGAAATCGGGC
ATCATATATATATAATATGAATATATATATATATATATGGAATATGTATG
TACATATTTCAAACGCATACATTAAAGTAAATACTGCGCGCACGTACTAA
TGTGATTTCAAAGCGCCAAGCACCTATCCACCCCCTCTTTCTTGAGCGTC
ACTACTCCAGTACTCCCGAGTCATTTCCTCATCATCATTTATTTACTTTT
GATCCGTACAAAACATCTCAATACCAGCCTGGCCTCTCCTTCAACTCCCA
CACGGGCGCCGTCTCCTCCACTTCGTCCCCCTTCCCTTCCCCTCTTTTTG
TCCAACATGGTTGGATTGGTTTTCGTTTCAGCTTGGCCTCAATCTTGCGG
TCCATGTCTGGATCCTTCTTGACCTAATACGCGAAAAAAAAAAGGAAGGG
AGAACTGAGGTGGGGGGACAGGGAAGGAGGTAGCACTAGCGAGCTTCACT
CTTGGTCCCCTCTCTCCCTGCGTCGATCACCTCCTCATACCATCCACCGA
CAAAATCACCACGAACGATTCCTCCCTCCTTCCTTTTCACTTTCCCTTAC
TCCCCTTCTGCCCGTTCTTACCTTGTTGGAGAGACACATGTAGAGCGCGC
TTGCCTTCTCCTCGCATGAATCAAAGTCGCCCGAAATATAGTACTCCTTG
GCTTGATAGACCGGAGACAGACAAAACCACAGGGAGTCGAATATGTATGT
GCAGGATGTAGGGCTTGTCCAAAGGTTGGCTGATGCGGTGGTGGTGGAGG
AGGAGGAGGTGAAATCGTCTCCTATAGAGGACTCCGACGAGGGAGACGAG
GATGGAGGCGGCAAGATGACGGCCGGTTTGACAACGGCAGAGGGAGCGGC
GCCCATTCCCTATCCTTGGTGAGTAGGTGTTGAGAACGATGAGATGTAAA
TAATTAGGGGGGGGTGTTGGG

protein sequence of NO28G01540.1

>NO28G01540.1-protein ID=NO28G01540.1-protein|Name=NO28G01540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MSKTHFKNGPVIPAGQGGRLLRLVVSLWGYSSMLISFVVAWWLMVLALIF
ICPFLPSEKDRTLFLGWIFRYISSYVIHLNPFWHLQMVGPRPSSPPTKTL
VMCNHLSNADAFFLSSALLPWETKYIAKADLFQVPFGGWAMGLAGDLAIH
FTRDHTGWGVKKGTVGKMMEQCKSYLSDSIPIAVFPEGGRTENGRLRPFK
DGFFQLALDTNADILPCALSGTEQAWPIYESLMGPATVYVRIGSPIPSSS
HTVQSLKAEVVRQMEKLQRDLPLPLTVPRIATVVAEEGGREGGREREIVP
NGGGGGDGGRGRREELDRAQPSPQ*

mRNA from alignment at chr28:492216..496034+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G01540.1 ID=NO28G01540.1|Name=NO28G01540.1|organism=Nannochloropsis oceanica|type=mRNA|length=3819bp|location=Sequence derived from alignment at chr28:492216..496034+ (Nannochloropsis oceanica)
CTGCTTGCCCTCTCCCGCCAAAGATATGATATCTCTTGATGGCATTTATT
CTGAAAATAGCCACTTAAATTACCGACTAGTGTGTGCTAATTGGGCTTAC
ATGACCACGAGGATGCAGCAATGTGATGGTTGGCCATATCTGCGGAATCT
TCCAAACACTCATTCGCCCAAAAACCGGTACTGCACTGAAGTCGATTGAC
GAGGTATGCTGTTCTTGTTCCTCAATAAGACCTGCTGCCCATTCCCTGGT
AGATCAAATGGCTTAATGGCGGGGCGACCGTAAACAATATCATCATGCCA
TAGTAAAGTACAGTCTAGCCCCCCAATCCCCTAGAATGAGGCAAGGGCTA
CCACATGGTTTATACCCAAGAATGAAACTGAAAATGGCTACTCATATCCA
ACTTGAGCATGAGCATGTCCCTGGCTTATCCCGCTTCCTCCCCACCCCCT
TTAAAATTCCGCACAGCAATAGAGGGGTCCTTAGCTTATTACACCAGTCA
GTATCTGGGAACCTTACTGTTGGCTTTGGCGTGGACGCAGGGGCTTGATT
GCCTGCCCTATGATAATTGGCGGTTTGCGCGTCGCTCGGTCGAAAAGCGC
GTTCCTTTTATAATTGTTTGTGGCAAGACACCCGTTTTGCTGAAGTCTAC
GCGGATTAGACAAGAGGAAGAATGAGTAAGACACACTTCAAGAATGGCCC
GGTCATTCCCGCGGGGCAAGGTGGGCGGCTGCTGCGCCTGGTTGTCTCGT
TATGGGGATACTCATCAATGCTAATTAGCTTTGTCGTGGCCTGGTGGCTT
ATGGTAAGGACAGGCAGAAGGGAAAAGGAGGCGGAAGGAAGGGGGAATAA
GAGGAGGAGAAAGGAAGGATAAGAGCCACTGAGCTGGTCGCATTCAGAAA
TGGTATGGAAGGAACTGATTCACTTTCCCCGCCCTCCCTCCGACCCCCTT
CTCGCTCCCTCCCTCTTTCCCCCTTAGGTCCTCGCCCTCATCTTCATCTG
CCCCTTCCTACCTTCCGAAAAAGACCGCACCCTTTTCCTGGGATGGATTT
TCCGGTACATCTCCTCGTACGTCATCCACCTGAATCCATTTTGGCACCTT
CAAATGGTGGGGCCGCGTCCTTCCTCCCCTCCTACAAAGACATTGGTCAT
GTGCAACCACCTCTCCAACGCCGACGCATTCTTTCTGAGCTCGGCCCTCT
TGCCATGGGAGACAAAGTACATCGCAAAGGCAGATTTGTTCCAGGTACGT
TTCACCTACCTTTTCGATCCCCTTGCTCTCCTTCCATGGCTCCCTCCGTC
TCTTCCCCCCCGCGTTCCTTCCATTATCCCTTCTGAAGCCGACGCATCAG
CCTTCATCTCGTATTCTCTCTCCTTTTCTCTTGATGGTTCTCGCTTTCCT
CTAGGTGCCCTTTGGGGGCTGGGCCATGGGCCTGGCCGGCGACCTGGCTA
TTCACTTCACTCGGGACCATACGGGTTGGGGTGTGAAGAAAGGAACGGTA
GGTAGTCCTTTTTTCCCTCCCTCCCTCCCTCCATCCCTCCCTCTCTGACT
TTTTTTCTCGGTTCTACTTCATTCATCCTTCTATAGTGAAACAGCGCGAC
GGGCAAGACTCTTCCTCATTGGCTCCCTTTCCCTCCCTCCCTCCCTCCAT
CCCTCGTTCCCTCCCTCCTTTCCTCCCTCCCTCCCTCCTTCCCTCCTTCC
CTCCCTCCCCCCTCCAGGTTGGCAAGATGATGGAACAATGCAAGAGCTAT
TTGTCCGACAGCATTCCAATCGCCGTCTTTCCGGAGGGAGGGAGGACAGA
AAACGGCCGCCTCCGCCCGTTTAAGGACGGTTTCTTCCAACTGGCGCTCG
ACACGAACGCGGACATCCTGCCTTGCGCACTATCAGGTACGATGGGGACA
ACCCGCCCTCCCTCCCTCCGTCCCTCCCTCCCTCCCTCCTTCTCTCCCTC
TCTCCTCCTCTCCCCCACCTTCTGTTCATCCTCACCGTATGCCCATCTCT
TTCCCTCTCGGTCATCCACACCGTTTCCTTCTTCCCCATACCCCCCTCTC
TATTTCAACCTCCTCCGGATCCATCACCAGGCACCGAGCAGGCGTGGCCC
ATATACGAATCGCTCATGGGGCCCGCCACAGTGTATGTGCGGATCGGTAG
CCCCATCCCGTCTTCCTCCCATACCGTGCAAAGCCTCAAGGCAGAAGTGG
TGCGTCAAATGGAGAAGCTGCAACGGGATTTGCCGTTACCTTTAACGGTC
CCTCGAATCGCAACCGTCGTCGCAGAGGAGGGAGGAAGGGAGGGAGGGAG
GGAAAGAGAGATAGTGCCCAATGGCGGAGGAGGAGGTGATGGAGGAAGAG
GAAGACGCGAAGAGCTTGACAGAGCCCAGCCCTCCCCTCAGTAGACACAG
GAAAGAGAGACCGGCAAAGGGAAAAAGGACAAGAGGGAGGCAGGAGAGAA
AGGAGATAGCTGAAGGGGAATGGACGGCCTTCACCCCAGTAGAAGGCGAT
AATGTACATGTGTAGAAAGAAGGGCAGTTCAAGGGAAGATGATGACAACG
TTTGAAAGTGAGAGCGTAACGGCCAAGATATTTTTTTAAAAATCCCGCGG
ACATGGAAGAGAGATACGCGCCGGTCTACAACATACAGATGAGCAGGAAA
AGGCGAGAACACAGTATACAGAGATGGTTGGCAGATACACGTGTTTGGAG
TTTGTACTGCACATGAATGACTTACATTGAGACTGATACTACTGCTGCTG
CCGAAGGGAGTGACGGAGGGAGGCAGGGAGGGAGGGACTGTTGTACTGAG
GCGAATCAAATGCTTGGACAAACAATGCAAATTATTAAGAGCGCGACAGG
AGATCGATAGAAGAAGCGATAGGCAAGCTCAGGGAATTGAAATCGGGCAT
CATATATATATAATATGAATATATATATATATATATGGAATATGTATGTA
CATATTTCAAACGCATACATTAAAGTAAATACTGCGCGCACGTACTAATG
TGATTTCAAAGCGCCAAGCACCTATCCACCCCCTCTTTCTTGAGCGTCAC
TACTCCAGTACTCCCGAGTCATTTCCTCATCATCATTTATTTACTTTTGA
TCCGTACAAAACATCTCAATACCAGCCTGGCCTCTCCTTCAACTCCCACA
CGGGCGCCGTCTCCTCCACTTCGTCCCCCTTCCCTTCCCCTCTTTTTGTC
CAACATGGTTGGATTGGTTTTCGTTTCAGCTTGGCCTCAATCTTGCGGTC
CATGTCTGGATCCTTCTTGACCTAATACGCGAAAAAAAAAAGGAAGGGAG
AACTGAGGTGGGGGGACAGGGAAGGAGGTAGCACTAGCGAGCTTCACTCT
TGGTCCCCTCTCTCCCTGCGTCGATCACCTCCTCATACCATCCACCGACA
AAATCACCACGAACGATTCCTCCCTCCTTCCTTTTCACTTTCCCTTACTC
CCCTTCTGCCCGTTCTTACCTTGTTGGAGAGACACATGTAGAGCGCGCTT
GCCTTCTCCTCGCATGAATCAAAGTCGCCCGAAATATAGTACTCCTTGGC
TTGATAGACCGGAGACAGACAAAACCACAGGGAGTCGAATATGTATGTGC
AGGATGTAGGGCTTGTCCAAAGGTTGGCTGATGCGGTGGTGGTGGAGGAG
GAGGAGGTGAAATCGTCTCCTATAGAGGACTCCGACGAGGGAGACGAGGA
TGGAGGCGGCAAGATGACGGCCGGTTTGACAACGGCAGAGGGAGCGGCGC
CCATTCCCTATCCTTGGTGAGTAGGTGTTGAGAACGATGAGATGTAAATA
ATTAGGGGGGGGTGTTGGG

Coding sequence (CDS) from alignment at chr28:492216..496034+

>NO28G01540.1 ID=NO28G01540.1|Name=NO28G01540.1|organism=Nannochloropsis oceanica|type=CDS|length=975bp|location=Sequence derived from alignment at chr28:492216..496034+ (Nannochloropsis oceanica)
ATGAGTAAGACACACTTCAAGAATGGCCCGGTCATTCCCGCGGGGCAAGG
TGGGCGGCTGCTGCGCCTGGTTGTCTCGTTATGGGGATACTCATCAATGC
TAATTAGCTTTGTCGTGGCCTGGTGGCTTATGGTCCTCGCCCTCATCTTC
ATCTGCCCCTTCCTACCTTCCGAAAAAGACCGCACCCTTTTCCTGGGATG
GATTTTCCGGTACATCTCCTCGTACGTCATCCACCTGAATCCATTTTGGC
ACCTTCAAATGGTGGGGCCGCGTCCTTCCTCCCCTCCTACAAAGACATTG
GTCATGTGCAACCACCTCTCCAACGCCGACGCATTCTTTCTGAGCTCGGC
CCTCTTGCCATGGGAGACAAAGTACATCGCAAAGGCAGATTTGTTCCAGG
TGCCCTTTGGGGGCTGGGCCATGGGCCTGGCCGGCGACCTGGCTATTCAC
TTCACTCGGGACCATACGGGTTGGGGTGTGAAGAAAGGAACGGTTGGCAA
GATGATGGAACAATGCAAGAGCTATTTGTCCGACAGCATTCCAATCGCCG
TCTTTCCGGAGGGAGGGAGGACAGAAAACGGCCGCCTCCGCCCGTTTAAG
GACGGTTTCTTCCAACTGGCGCTCGACACGAACGCGGACATCCTGCCTTG
CGCACTATCAGGCACCGAGCAGGCGTGGCCCATATACGAATCGCTCATGG
GGCCCGCCACAGTGTATGTGCGGATCGGTAGCCCCATCCCGTCTTCCTCC
CATACCGTGCAAAGCCTCAAGGCAGAAGTGGTGCGTCAAATGGAGAAGCT
GCAACGGGATTTGCCGTTACCTTTAACGGTCCCTCGAATCGCAACCGTCG
TCGCAGAGGAGGGAGGAAGGGAGGGAGGGAGGGAAAGAGAGATAGTGCCC
AATGGCGGAGGAGGAGGTGATGGAGGAAGAGGAAGACGCGAAGAGCTTGA
CAGAGCCCAGCCCTCCCCTCAGTAG

Synonyms

Publications