NO28G01290.3, NO28G01290.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01290.3
Unique Name	NO28G01290.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1208
Alignment location	chr28:405450..407697 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:405450..407697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G01290.3 vs.
Match: EWM20854.1 (peroxiredoxin 1 [Nannochloropsis gaditana])

HSP 1 Score: 265.4 bits (677), Expect = 1.500e-67
Identity = 135/168 (80.36%), Postives = 142/168 (84.52%), Query Frame = 0

Query:   32 MAPVDFTFVCPSELIAFSDRISEFQELKAEVVGLSVDSKYSHLAWSKSPRKAGGLGGLNFPLISDITKEVACDYGVLIPEEGVALRGLFIIDPKGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGKRTMKADPIESLEYFQAVADELDGGAAKKT 200
            M P+DFTFVCPSELIAFSDRI EF +L A+VVGLSVDSKYSHLAWSKSPRKAGGLGG  FP     + E  C    L   EGVALRGLFIIDP GILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPG RTMKADP+ESL YFQAVA EL+GGA KK+
Sbjct:  124 MYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFG-SDERDC----LRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYFQAVAAELEGGAVKKS 286

The following BLAST results are available for this feature:

BLAST of NO28G01290.3 vs.

BLAST of NO28G01290.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20854.1	1.500e-67	80.36	peroxiredoxin 1 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G01290	NO28G01290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01290.3	NO28G01290.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01290.3.cds1	NO28G01290.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.3.cds2	NO28G01290.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.3.cds3	NO28G01290.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.3.cds4	NO28G01290.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.3.cds5	NO28G01290.3.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.3.cds6	NO28G01290.3.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.3.cds7	NO28G01290.3.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:405450..407697+
coding sequence from alignment at chr28:405450..407697+

mRNA sequence

>NO28G01290.3 ID=NO28G01290.3|Name=NO28G01290.3|organism=Nannochloropsis oceanica|type=mRNA|length=1208bp
GGAGGTTCCTCACCATGGTGAAGTACCCACGTACGTAAGGAGGGAGGGAG
GGAGGAGGAAGGAAGGTATACCTTGTTATCATGAATTAATTGCAACGATT
TCCTCATCTCCACCCACACACACATACACGTACTTGCGTGCACACCCATA
TATACACACATGTACACACATACGTACCCGGATATCCGCCACCCTCTCCT
CCGCTCCGTACTACCTCTGCTCTTTCTCCTGCCGCTGCCTTTGTTCTTCT
CCATGGCCCCAGTGGACTTCACCTTTGTCTGTCCCTCGGAGCTGATCGCC
TTCTCTGACCGCATCAGCGAATTCCAAGAGCTCAAGGCGGAGGTGGTGGG
TCTATCCGTAGATTCCAAATACAGTCATTTGGCCTGGAGCAAGAGTCCCC
GGAAGGCCGGTGGTCTCGGTGGACTAAATTTCCCCCTTATCTCGGACATT
ACCAAAGAAGTCGCCTGTGACTATGGCGTGCTTATTCCCGAGGAAGGCGT
GGCTCTTCGAGGACTCTTTATCATCGACCCTAAGGGCATTTTGCGTCAGA
TCACCATCAACGACCTTCCCATCGGCCGAGACGTTGACGAAACGCTTCGC
CTCGTTCAAGCCATTGACTTCGTGGACAAGCACGGCGAGGTATGCCCTGC
GGGTTGGAAGCCTGGGAAGCGCACCATGAAGGCCGACCCCATTGAGAGCT
TGGAGTACTTTCAGGCGGTGGCTGACGAATTGGACGGAGGCGCGGCGAAG
AAAACGAAGATGTGACGGGCTCAAGAGAGGGGGGGGGGATCCAATATGGG
AGGGAGGGATGGAGGGAGGGAGGGATGGACGGGACGGACAATGAGAAGAC
GAGCGACGGAAAGAGGGAGAATCGACGGTGGGAAGGAGGACGAGGAATGG
AAGCGTGAAGAGGAGGAAACCAAGGGAAGTTGGGAGGGAAGGGTGGGGAG
TGAAGGGGAGGGAGGGCCTACCCTCTGGTGGAGATAGTCGATCACATTCA
ACAGAGAAGAAACAAGGACAAGCAGACATCATTTTGCCGTTTTGCCGTGA
TATATCCGATACGACGCGGTATGTCACACTAGACAGTATTCTCATACCTC
AAAAACAAGGACATGTAGACACCTGATTGCTGTATAATCATGGTATCTGA
TACAATACGAGTGTTTCTTCATCTTCTTTCTCTAAATACTACTTCTCCGT
CGTCGTTG

protein sequence of NO28G01290.3

>NO28G01290.3-protein ID=NO28G01290.3-protein|Name=NO28G01290.3|organism=Nannochloropsis oceanica|type=polypeptide|length=202bp
MYTHTYPDIRHPLLRSVLPLLFLLPLPLFFSMAPVDFTFVCPSELIAFSD
RISEFQELKAEVVGLSVDSKYSHLAWSKSPRKAGGLGGLNFPLISDITKE
VACDYGVLIPEEGVALRGLFIIDPKGILRQITINDLPIGRDVDETLRLVQ
AIDFVDKHGEVCPAGWKPGKRTMKADPIESLEYFQAVADELDGGAAKKTK
M*

mRNA from alignment at chr28:405450..407697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G01290.3 ID=NO28G01290.3|Name=NO28G01290.3|organism=Nannochloropsis oceanica|type=mRNA|length=2248bp|location=Sequence derived from alignment at chr28:405450..407697+ (Nannochloropsis oceanica)
GGAGGTTCCTCACCATGGTGAAGTACCCACGTACGTAAGGAGGGAGGGAG
GGAGGAGGAAGGAAGGTATACCTTGTTATCATGAATTAATTGCAACGATT
TCCTCATCTCCACCCACACACACATACACGTACTTGCGTGCACACCCATA
TATACACACATGTACACACATACGTACCCGGATATCCGCCACCCTCTCCT
CCGCTCCGTACTACCTCTGCTCTTTCTCCTGCCGCTGCCTTTGTTCTTCT
CCATGGCCCCAGTGGACTTCACCTTTGGTACGTGCATGCGCCGTCTGTCC
CTCCCTCCCTCCCTCCTTCCTTTCCCCCCTCCCGTCTCTGCTCGTTCACC
TGATGCACTTACCTCCTCGTCGGCTGCGTTCGTTTCCAGACATGCGTTCA
GAGCTCTTTCTCTTCAAGAAGTCAGAGGCCGGAGGCCGTCGGCCGGATAT
AGTCATTCACCGTGCCCTCCCTCCCATCCTCCCTCCCTCCTTCTCTCAGT
CTGTCCCTCGGAGCTGATCGCCTTCTCTGACCGCATCAGCGAATTCCAAG
AGCTCAAGGCGGAGGTGGTGGGTCTATCCGTAGATTCCAAATACAGTCAT
TTGGCCTGGAGCAAGAGTCCCCGGAAGTAGGTGCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTGATGCTCTCCCTCCCTGCTTCTCCCCACATA
CTCACCCTCTTTCCTTTCCTCTCTCCCTCCCTCCCGCCCTCCCTCCCTCC
CTCCTCGTCACAGGGCCGGTGGTCTCGGTGGACTAAATTTCCCCCTTATC
TCGGACATTACCAAAGAAGTCGCCTGTGACTATGGCGTGCTTATTCCCGA
GTGCGTCCCCTCCCTCCCTCCCTCCCCCTCCCTCTCCCTCCCTCCCTCCC
TCCCTCCCACTTCGTCCTTGCAACCTCGTCTTTATTTTCTTCCTCCTCTT
CCTCCTCCTCTTCCTCCTCTCACTCTTTCTGCTCCTGACTCACAGGGAAG
GCGTGGCTCTTCGAGGACTCTTTATCATCGACCCTAAGGGCATTTTGCGT
CAGGTATTTGGGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTTTCC
TCCCTCTCTTTTCACCCTCTCCTTGCTCCCTCCCTCCCTCCCTCCCTCCC
CTCAGATCACCATCAACGACCTTCCCATCGGCCGAGACGTTGACGAAACG
CTTCGCCTCGTTCAAGCCATTGACTTCGTGGACAAGCACGGCGAGGTGAG
CCCTCCCTCCCCCCCCCCTCCGTCCTTCCCCCCCTCCCCCCCTCTCTCTC
CGCTCCTTTACTCACACCAGCCGCTTACCTCCCCCTCCCTCCCTCCCTCC
CTCCCCCCCTCCCCCCCTCCCTCCCTCCCTCCCTCCCTAGGTATGCCCTG
CGGGTTGGAAGCCTGGGAAGCGCACCATGAAGGCCGACCCCATTGAGAGC
TTGGAGTACTTTCAGGTAACCTCCTCCCTCCCTCCCTCCCTGCCCTCCCT
TCCCTGAAATTTAGATAAAGATGGTGTGCCCAGGTGAGGGGGGGAGGGGG
GAAGGAAGGGAGGAAGGGAGGGAGGGAGGGCACAGGGTGAATTGGTATCA
ACAGTGGATCAAGTCGAAAGCAGCTCGGAGGGCGATCAGACAATGGAGGG
AGGGAGGGAGGGAGGGAGGGAAGGAGAAAGGGAAGAAAGAAAGGAGGGGG
AAAATTTCTCATTCGTTTTCTTCTTGCTTTCTTTTCTTCATTATGACGTT
CCAGGCGGTGGCTGACGAATTGGACGGAGGCGCGGCGAAGAAAACGAAGA
TGTGACGGGCTCAAGAGAGGGGGGGGGGATCCAATATGGGAGGGAGGGAT
GGAGGGAGGGAGGGATGGACGGGACGGACAATGAGAAGACGAGCGACGGA
AAGAGGGAGAATCGACGGTGGGAAGGAGGACGAGGAATGGAAGCGTGAAG
AGGAGGAAACCAAGGGAAGTTGGGAGGGAAGGGTGGGGAGTGAAGGGGAG
GGAGGGCCTACCCTCTGGTGGAGATAGTCGATCACATTCAACAGAGAAGA
AACAAGGACAAGCAGACATCATTTTGCCGTTTTGCCGTGATATATCCGAT
ACGACGCGGTATGTCACACTAGACAGTATTCTCATACCTCAAAAACAAGG
ACATGTAGACACCTGATTGCTGTATAATCATGGTATCTGATACAATACGA
GTGTTTCTTCATCTTCTTTCTCTAAATACTACTTCTCCGTCGTCGTTG

Coding sequence (CDS) from alignment at chr28:405450..407697+

>NO28G01290.3 ID=NO28G01290.3|Name=NO28G01290.3|organism=Nannochloropsis oceanica|type=CDS|length=606bp|location=Sequence derived from alignment at chr28:405450..407697+ (Nannochloropsis oceanica)
ATGTACACACATACGTACCCGGATATCCGCCACCCTCTCCTCCGCTCCGT
ACTACCTCTGCTCTTTCTCCTGCCGCTGCCTTTGTTCTTCTCCATGGCCC
CAGTGGACTTCACCTTTGTCTGTCCCTCGGAGCTGATCGCCTTCTCTGAC
CGCATCAGCGAATTCCAAGAGCTCAAGGCGGAGGTGGTGGGTCTATCCGT
AGATTCCAAATACAGTCATTTGGCCTGGAGCAAGAGTCCCCGGAAGGCCG
GTGGTCTCGGTGGACTAAATTTCCCCCTTATCTCGGACATTACCAAAGAA
GTCGCCTGTGACTATGGCGTGCTTATTCCCGAGGAAGGCGTGGCTCTTCG
AGGACTCTTTATCATCGACCCTAAGGGCATTTTGCGTCAGATCACCATCA
ACGACCTTCCCATCGGCCGAGACGTTGACGAAACGCTTCGCCTCGTTCAA
GCCATTGACTTCGTGGACAAGCACGGCGAGGTATGCCCTGCGGGTTGGAA
GCCTGGGAAGCGCACCATGAAGGCCGACCCCATTGAGAGCTTGGAGTACT
TTCAGGCGGTGGCTGACGAATTGGACGGAGGCGCGGCGAAGAAAACGAAG
ATGTGA

Synonyms

Publications