NO28G01290.1, NO28G01290.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO28G01290.1
Unique Name	NO28G01290.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2791
Alignment location	chr28:403321..407697 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr28	genome	chr28:403321..407697 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO28G01290.1 vs.
Match: EWM20854.1 (peroxiredoxin 1 [Nannochloropsis gaditana])

HSP 1 Score: 350.1 bits (897), Expect = 5.700e-93
Identity = 188/257 (73.15%), Postives = 200/257 (77.82%), Query Frame = 0

Query:    1 MSKSFFSNFSLCTLVLHAIVVFLLLSVGIAPVAHAQNHPAQNTMATNKPVPMIGKPAPDFKADAVMPDGSFKELTLSQYKGKYLILVMYPLDFTFVCPSELIAFSDRISEFQELKAEVVGLSVDSKYSHLAWSKSPRKAGGLGGLNFP--LISDITKEVACDYGVLIPEEGVALRGLFIIDPKGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGKRTMKADPIESLEYFQAVADELDGGAAKKT 256
            M K  F  F  CTL L        LS    PV  AQ+     TMATNKPVPMIGKPAPD  A+AVMPDGSFKEL+L QY+G+Y+ILVMYPLDFTFVCPSELIAFSDRI EF +L A+VVGLSVDSKYSHLAWSKSPRKAGGLGG  FP    SD       +   L   EGVALRGLFIIDP GILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPG RTMKADP+ESL YFQAVA EL+GGA KK+
Sbjct:   46 MIKDIFFPF-FCTLALS------FLSYPSIPVTLAQS--VSGTMATNKPVPMIGKPAPDITAEAVMPDGSFKELSLKQYRGRYVILVMYPLDFTFVCPSELIAFSDRIQEFHDLNADVVGLSVDSKYSHLAWSKSPRKAGGLGGFEFPPHFGSD-------ERDCLRLREGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEVCPAGWKPGMRTMKADPVESLAYFQAVAAELEGGAVKKS 286

The following BLAST results are available for this feature:

BLAST of NO28G01290.1 vs.

BLAST of NO28G01290.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM20854.1	5.700e-93	73.15	peroxiredoxin 1 [Nannochloropsis gaditana]	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO28G01290	NO28G01290	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01290.1	NO28G01290.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO28G01290.1.cds1	NO28G01290.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds2	NO28G01290.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds3	NO28G01290.1.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds4	NO28G01290.1.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds5	NO28G01290.1.cds5	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds6	NO28G01290.1.cds6	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds7	NO28G01290.1.cds7	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds8	NO28G01290.1.cds8	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO28G01290.1.cds9	NO28G01290.1.cds9	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr28:403321..407697+
coding sequence from alignment at chr28:403321..407697+

mRNA sequence

>NO28G01290.1 ID=NO28G01290.1|Name=NO28G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2791bp
CCGGGGACTTCTTTGTCCAAAACTCGTCCGACGTATGCGCCCTCATATTC
GAAGGGAGTTGTGAGGAAAGAGGACTGACTTTCTCTATGTCAAAAAGGTA
GAGTCCCTCTACCCTAGAAGACACGGGTAGGTACAGGGGGGTATACTATT
TACACTTCTTATATTTATAGTAGCTCCTCAAGATGTCAGGAAGACAAGTA
GGAATAGAAGGTGTAATTGTCGTAGCAGTCACGCCAAGCACTCAACCGTT
GTTTTTTGGGGCTAAATTTTACAAGTTTATGAGAATAGTGTGAAGACCGG
CCCGCCTTGACAGGGGTTGAATAGGGGAAGCGGAGTGGAGAGAGAGATGT
AAGGAAGGCTGAAATGGAAATCGATAGGAGAGAGGAAAGGAGGAAAAGGA
GGGGATAAACAGGGGAGAGAGGAGTGAGGGAAGAGGGGACGGATTTTTTT
GAAGATGATATGGGAACGACCTGGTTCCGTAGAGTATGACTACGACATTA
TAGTACAAATAGTTCTCGCAGGAACCAGCATGATTGGAATGGGTGCAGTG
ACAGTACAACTATCCCATTCACCCGCGAGTTGAAATGGAATAGGTATAGA
AGCAAATGAGATAGAAAGGGGAAGATACCTCGGATTATAATTTGAGTGCT
ACCCATACTCTTCCGGTACAGCAACCAAACCCCCGGTGCCCGAGGCGAGT
AGGCGGAGATAGAGTCGAGCCTGTGTCTGGATGCGCAGGGCTTATATCAT
AGAGGCCCTGCGAAAGGAGATATAAAAGATAACTCGGAGGGACGAGTGGA
TCGCTAACGCTGAATGCCGGAGCATACTGATGTCTCTGCCGCTGTGATGC
CTGGGGCTCTCCCTCTCTTTCACGTCCTGGACTCGTAGCAGTACTTTATG
CTGAAAAATCTTCTTGAAGGTATTCTCTGGCCGCTAGTGTGTCATACCGT
GAGCGTATCAGAAGCACCAGATGTCAAGCATGTCTGCGGTTCATTATCTG
GACTGCTCTTTTTTTTGGAGGGGCACGACCCATCTTTTATCCTCTAACGT
GAATTTGATAACTTTTCTGGCCAGTTTATTGCTGTGCGTAGTTGGAATGG
GACATGAATGTACTGAGGGCTGAAAAGAAGGACTTTTCTTGACGGAAAGG
GATGCGGTTGGGGGAAAAGGGGAGTGGGAAAGAGAGGGGTGAGAGGAAAA
AAAAAACGATTTTGCGAACGGCTTGGCAAGACACATCCAAAACGCCAATA
ATTCTTGCAAGGACACACGACACTCGCAACTAGAGTTGTACTAGCATGTC
TCTTCGATCTCTTCGGTTTGGTACGATGCCTTAACCTCCTCTCCCCCTTC
CGATCTACCTCTTGCGTAAGGTATCCTTCCACGCCGTCGTGTGCCTTCGA
TTCCTGTCGTATTCCTCAACCCACCTGATGTAGCACATGCTCACTACCCC
TCGCACGCACCAATACTCAAAATAACACAGCTCTATCCGCACCGTCCGAC
CCGCCGCCGCTACTGCTGCTTCTGCTGCTGCTATTTCCAGACAGCAGAAC
GAAGAAAGCCTGCGTCTTTTTTGCATGAGCAAAAGCTTTTTCTCCAACTT
CTCTTTGTGTACTCTAGTCCTTCACGCCATCGTCGTCTTCCTACTACTTT
CGGTAGGAATTGCCCCTGTCGCACACGCTCAGAACCACCCCGCTCAAAAC
ACCATGGCGACCAACAAGCCCGTGCCGATGATTGGCAAGCCCGCTCCTGA
CTTCAAAGCCGATGCCGTTATGCCAGATGGCAGCTTCAAGGAGCTTACCC
TGTCTCAGTACAAGGGTAAATACCTCATCCTGGTGATGTACCCATTGGAC
TTCACCTTTGTCTGTCCCTCGGAGCTGATCGCCTTCTCTGACCGCATCAG
CGAATTCCAAGAGCTCAAGGCGGAGGTGGTGGGTCTATCCGTAGATTCCA
AATACAGTCATTTGGCCTGGAGCAAGAGTCCCCGGAAGGCCGGTGGTCTC
GGTGGACTAAATTTCCCCCTTATCTCGGACATTACCAAAGAAGTCGCCTG
TGACTATGGCGTGCTTATTCCCGAGGAAGGCGTGGCTCTTCGAGGACTCT
TTATCATCGACCCTAAGGGCATTTTGCGTCAGATCACCATCAACGACCTT
CCCATCGGCCGAGACGTTGACGAAACGCTTCGCCTCGTTCAAGCCATTGA
CTTCGTGGACAAGCACGGCGAGGTATGCCCTGCGGGTTGGAAGCCTGGGA
AGCGCACCATGAAGGCCGACCCCATTGAGAGCTTGGAGTACTTTCAGGCG
GTGGCTGACGAATTGGACGGAGGCGCGGCGAAGAAAACGAAGATGTGACG
GGCTCAAGAGAGGGGGGGGGGATCCAATATGGGAGGGAGGGATGGAGGGA
GGGAGGGATGGACGGGACGGACAATGAGAAGACGAGCGACGGAAAGAGGG
AGAATCGACGGTGGGAAGGAGGACGAGGAATGGAAGCGTGAAGAGGAGGA
AACCAAGGGAAGTTGGGAGGGAAGGGTGGGGAGTGAAGGGGAGGGAGGGC
CTACCCTCTGGTGGAGATAGTCGATCACATTCAACAGAGAAGAAACAAGG
ACAAGCAGACATCATTTTGCCGTTTTGCCGTGATATATCCGATACGACGC
GGTATGTCACACTAGACAGTATTCTCATACCTCAAAAACAAGGACATGTA
GACACCTGATTGCTGTATAATCATGGTATCTGATACAATACGAGTGTTTC
TTCATCTTCTTTCTCTAAATACTACTTCTCCGTCGTCGTTG

protein sequence of NO28G01290.1

>NO28G01290.1-protein ID=NO28G01290.1-protein|Name=NO28G01290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=258bp
MSKSFFSNFSLCTLVLHAIVVFLLLSVGIAPVAHAQNHPAQNTMATNKPV
PMIGKPAPDFKADAVMPDGSFKELTLSQYKGKYLILVMYPLDFTFVCPSE
LIAFSDRISEFQELKAEVVGLSVDSKYSHLAWSKSPRKAGGLGGLNFPLI
SDITKEVACDYGVLIPEEGVALRGLFIIDPKGILRQITINDLPIGRDVDE
TLRLVQAIDFVDKHGEVCPAGWKPGKRTMKADPIESLEYFQAVADELDGG
AAKKTKM*

mRNA from alignment at chr28:403321..407697+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO28G01290.1 ID=NO28G01290.1|Name=NO28G01290.1|organism=Nannochloropsis oceanica|type=mRNA|length=4377bp|location=Sequence derived from alignment at chr28:403321..407697+ (Nannochloropsis oceanica)
CCGGGGACTTCTTTGTCCAAAACTCGTCCGACGTATGCGCCCTCATATTC
GAAGGGAGTTGTGAGGAAAGAGGACTGACTTTCTCTATGTCAAAAAGGTA
GAGTCCCTCTACCCTAGAAGACACGGGTAGGTACAGGGGGGTATACTATT
TACACTTCTTATATTTATAGTAGCTCCTCAAGATGTCAGGAAGACAAGTA
GGAATAGAAGGTGTAATTGTCGTAGCAGTCACGCCAAGCACTCAACCGTT
GTTTTTTGGGGCTAAATTTTACAAGTTTATGAGAATAGTGTGAAGACCGG
CCCGCCTTGACAGGGGTTGAATAGGGGAAGCGGAGTGGAGAGAGAGATGT
AAGGAAGGCTGAAATGGAAATCGATAGGAGAGAGGAAAGGAGGAAAAGGA
GGGGATAAACAGGGGAGAGAGGAGTGAGGGAAGAGGGGACGGATTTTTTT
GAAGATGATATGGGAACGACCTGGTTCCGTAGAGTATGACTACGACATTA
TAGTACAAATAGTTCTCGCAGGAACCAGCATGATTGGAATGGGTGCAGTG
ACAGTACAACTATCCCATTCACCCGCGAGTTGAAATGGAATAGGTATAGA
AGCAAATGAGATAGAAAGGGGAAGATACCTCGGATTATAATTTGAGTGCT
ACCCATACTCTTCCGGTACAGCAACCAAACCCCCGGTGCCCGAGGCGAGT
AGGCGGAGATAGAGTCGAGCCTGTGTCTGGATGCGCAGGGCTTATATCAT
AGAGGCCCTGCGAAAGGAGATATAAAAGATAACTCGGAGGGACGAGTGGA
TCGCTAACGCTGAATGCCGGAGCATACTGATGTCTCTGCCGCTGTGATGC
CTGGGGCTCTCCCTCTCTTTCACGTCCTGGACTCGTAGCAGTACTTTATG
CTGAAAAATCTTCTTGAAGGTATTCTCTGGCCGCTAGTGTGTCATACCGT
GAGCGTATCAGAAGCACCAGATGTCAAGCATGTCTGCGGTTCATTATCTG
GACTGCTCTTTTTTTTGGAGGGGCACGACCCATCTTTTATCCTCTAACGT
GAATTTGATAACTTTTCTGGCCAGTTTATTGCTGTGCGTAGTTGGAATGG
GACATGAATGTACTGAGGGCTGAAAAGAAGGACTTTTCTTGACGGAAAGG
GATGCGGTTGGGGGAAAAGGGGAGTGGGAAAGAGAGGGGTGAGAGGAAAA
AAAAAACGATTTTGCGAACGGCTTGGCAAGACACATCCAAAACGCCAATA
ATTCTTGCAAGGACACACGACACTCGCAACTAGAGTTGTACTAGCATGTC
TCTTCGATCTCTTCGGTTTGGTACGATGCCTTAACCTCCTCTCCCCCTTC
CGATCTACCTCTTGCGTAAGGTATCCTTCCACGCCGTCGTGTGCCTTCGA
TTCCTGTCGTATTCCTCAACCCACCTGATGTAGCACATGCTCACTACCCC
TCGCACGCACCAATACTCAAAATAACACAGCTCTATCCGCACCGTCCGAC
CCGCCGCCGCTACTGCTGCTTCTGCTGCTGCTATTTCCAGACAGCAGAAC
GAAGAAAGCCTGCGTCTTTTTTGCATGAGCAAAAGCTTTTTCTCCAACTT
CTCTTTGTGTACTCTAGTCCTTCACGCCATCGTCGTCTTCCTACTACTTT
CGGTAGGAATTGCCCCTGTCGCACACGCTCAGAACCACCCCGCTCAAAAC
ACCATGGCGACCAACAAGCCCGTGCCGATGATTGGCAAGCCCGCTCCTGA
CTTCAAAGGTGCGGCGATAAGAGAGGAAAATAGTGGATGAGATAGACAGG
AAAGATAAAGCACAGCAAAATTTGGCCATGGCTCAAGGCGGAGAGAGGAA
TGGCAGAAAAGAGGATGCCGGAAGGGAAGGTTTCATTCCTTCATTCAATT
TTTGTGCATGTGTACATATGTTGGTTGAGACATTCATATAAATATATACT
TATTTATAATCGATTTATGTGTATCCCCCTCTGACAGCCGATGCCGTTAT
GCCAGATGGCAGCTTCAAGGAGCTTACCCTGTCTCAGTACAAGGGTAAAT
ACCTCATCCTGGTGATGTACCCATGTGCGTAGGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGTTCCTCACCATGGTGA
AGTACCCACGTACGTAAGGAGGGAGGGAGGGAGGAGGAAGGAAGGTATAC
CTTGTTATCATGAATTAATTGCAACGATTTCCTCATCTCCACCCACACAC
ACATACACGTACTTGCGTGCACACCCATATATACACACATGTACACACAT
ACGTACCCGGATATCCGCCACCCTCTCCTCCGCTCCGTACTACCTCTGCT
CTTTCTCCTGCCGCTGCCTTTGTTCTTCTCCATGGCCCCAGTGGACTTCA
CCTTTGGTACGTGCATGCGCCGTCTGTCCCTCCCTCCCTCCCTCCTTCCT
TTCCCCCCTCCCGTCTCTGCTCGTTCACCTGATGCACTTACCTCCTCGTC
GGCTGCGTTCGTTTCCAGACATGCGTTCAGAGCTCTTTCTCTTCAAGAAG
TCAGAGGCCGGAGGCCGTCGGCCGGATATAGTCATTCACCGTGCCCTCCC
TCCCATCCTCCCTCCCTCCTTCTCTCAGTCTGTCCCTCGGAGCTGATCGC
CTTCTCTGACCGCATCAGCGAATTCCAAGAGCTCAAGGCGGAGGTGGTGG
GTCTATCCGTAGATTCCAAATACAGTCATTTGGCCTGGAGCAAGAGTCCC
CGGAAGTAGGTGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTGA
TGCTCTCCCTCCCTGCTTCTCCCCACATACTCACCCTCTTTCCTTTCCTC
TCTCCCTCCCTCCCGCCCTCCCTCCCTCCCTCCTCGTCACAGGGCCGGTG
GTCTCGGTGGACTAAATTTCCCCCTTATCTCGGACATTACCAAAGAAGTC
GCCTGTGACTATGGCGTGCTTATTCCCGAGTGCGTCCCCTCCCTCCCTCC
CTCCCCCTCCCTCTCCCTCCCTCCCTCCCTCCCTCCCACTTCGTCCTTGC
AACCTCGTCTTTATTTTCTTCCTCCTCTTCCTCCTCCTCTTCCTCCTCTC
ACTCTTTCTGCTCCTGACTCACAGGGAAGGCGTGGCTCTTCGAGGACTCT
TTATCATCGACCCTAAGGGCATTTTGCGTCAGGTATTTGGGTGCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCTCTTTCCTCCCTCTCTTTTCACCCTCTC
CTTGCTCCCTCCCTCCCTCCCTCCCTCCCCTCAGATCACCATCAACGACC
TTCCCATCGGCCGAGACGTTGACGAAACGCTTCGCCTCGTTCAAGCCATT
GACTTCGTGGACAAGCACGGCGAGGTGAGCCCTCCCTCCCCCCCCCCTCC
GTCCTTCCCCCCCTCCCCCCCTCTCTCTCCGCTCCTTTACTCACACCAGC
CGCTTACCTCCCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCCCCCTCCC
TCCCTCCCTCCCTCCCTAGGTATGCCCTGCGGGTTGGAAGCCTGGGAAGC
GCACCATGAAGGCCGACCCCATTGAGAGCTTGGAGTACTTTCAGGTAACC
TCCTCCCTCCCTCCCTCCCTGCCCTCCCTTCCCTGAAATTTAGATAAAGA
TGGTGTGCCCAGGTGAGGGGGGGAGGGGGGAAGGAAGGGAGGAAGGGAGG
GAGGGAGGGCACAGGGTGAATTGGTATCAACAGTGGATCAAGTCGAAAGC
AGCTCGGAGGGCGATCAGACAATGGAGGGAGGGAGGGAGGGAGGGAGGGA
AGGAGAAAGGGAAGAAAGAAAGGAGGGGGAAAATTTCTCATTCGTTTTCT
TCTTGCTTTCTTTTCTTCATTATGACGTTCCAGGCGGTGGCTGACGAATT
GGACGGAGGCGCGGCGAAGAAAACGAAGATGTGACGGGCTCAAGAGAGGG
GGGGGGGATCCAATATGGGAGGGAGGGATGGAGGGAGGGAGGGATGGACG
GGACGGACAATGAGAAGACGAGCGACGGAAAGAGGGAGAATCGACGGTGG
GAAGGAGGACGAGGAATGGAAGCGTGAAGAGGAGGAAACCAAGGGAAGTT
GGGAGGGAAGGGTGGGGAGTGAAGGGGAGGGAGGGCCTACCCTCTGGTGG
AGATAGTCGATCACATTCAACAGAGAAGAAACAAGGACAAGCAGACATCA
TTTTGCCGTTTTGCCGTGATATATCCGATACGACGCGGTATGTCACACTA
GACAGTATTCTCATACCTCAAAAACAAGGACATGTAGACACCTGATTGCT
GTATAATCATGGTATCTGATACAATACGAGTGTTTCTTCATCTTCTTTCT
CTAAATACTACTTCTCCGTCGTCGTTG

Coding sequence (CDS) from alignment at chr28:403321..407697+

>NO28G01290.1 ID=NO28G01290.1|Name=NO28G01290.1|organism=Nannochloropsis oceanica|type=CDS|length=774bp|location=Sequence derived from alignment at chr28:403321..407697+ (Nannochloropsis oceanica)
ATGAGCAAAAGCTTTTTCTCCAACTTCTCTTTGTGTACTCTAGTCCTTCA
CGCCATCGTCGTCTTCCTACTACTTTCGGTAGGAATTGCCCCTGTCGCAC
ACGCTCAGAACCACCCCGCTCAAAACACCATGGCGACCAACAAGCCCGTG
CCGATGATTGGCAAGCCCGCTCCTGACTTCAAAGCCGATGCCGTTATGCC
AGATGGCAGCTTCAAGGAGCTTACCCTGTCTCAGTACAAGGGTAAATACC
TCATCCTGGTGATGTACCCATTGGACTTCACCTTTGTCTGTCCCTCGGAG
CTGATCGCCTTCTCTGACCGCATCAGCGAATTCCAAGAGCTCAAGGCGGA
GGTGGTGGGTCTATCCGTAGATTCCAAATACAGTCATTTGGCCTGGAGCA
AGAGTCCCCGGAAGGCCGGTGGTCTCGGTGGACTAAATTTCCCCCTTATC
TCGGACATTACCAAAGAAGTCGCCTGTGACTATGGCGTGCTTATTCCCGA
GGAAGGCGTGGCTCTTCGAGGACTCTTTATCATCGACCCTAAGGGCATTT
TGCGTCAGATCACCATCAACGACCTTCCCATCGGCCGAGACGTTGACGAA
ACGCTTCGCCTCGTTCAAGCCATTGACTTCGTGGACAAGCACGGCGAGGT
ATGCCCTGCGGGTTGGAAGCCTGGGAAGCGCACCATGAAGGCCGACCCCA
TTGAGAGCTTGGAGTACTTTCAGGCGGTGGCTGACGAATTGGACGGAGGC
GCGGCGAAGAAAACGAAGATGTGA

Synonyms

Publications